A Novel Representation Of The Tree Of Life

Bacterial phyla constitute the major lineages of the domain ''

Bacteria Bacteria (; singular: bacterium) are ubiquitous, mostly free-living organisms often consisting of one biological cell. They constitute a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria were among ...

''. While the exact definition of a bacterial phylum is debated, a popular definition is that a bacterial phylum is a

monophyletic In cladistics for a group of organisms, monophyly is the condition of being a clade—that is, a group of taxa composed only of a common ancestor (or more precisely an ancestral population) and all of its lineal descendants. Monophyletic gro ...

lineage of bacteria whose 16S rRNA genes share a pairwise sequence identity of ~75% or less with those of the members of other bacterial phyla. It has been estimated that ~1,300 bacterial phyla exist. As of May 2020, 41 bacterial phyla are formally accepted by the

LPSN List of Prokaryotic names with Standing in Nomenclature (LPSN) is an online database that maintains information on the naming and taxonomy of prokaryotes, following the taxonomy requirements and rulings of the International Code of Nomenclature ...

, 89 bacterial phyla are recognized on th
Silva database
dozens more have been proposed, and hundreds likely remain to be discovered. As of 2017, approximately 72% of widely recognized bacterial phyla were

candidate phyla A candidate division, candidate phylum or candidate division-level is a lineage of prokaryotic organisms for which until recently no cultured representatives have been found, but evidence of the existence of the clade has been obtained by 16S rRN ...

(i.e. have no cultured representatives). There are no fixed rules to the nomenclature of bacterial phyla. It was proposed that the suffix "-bacteria" be used for phyla.

List of bacterial phyla

The following is a list of bacterial phyla that have been proposed.

Supergroups

Despite the unclear branching order for most bacterial phyla, several groups of phyla consistently cluster together and are referred to as supergroups or superphyla. In some instances, bacterial clades clearly consistently cluster together but it is unclear what to call the group. For example, the Candidate Phyla Radiation includes the Patescibacteria group which includes Microgenomates group which includes over 11 bacterial phyla.

Candidate phyla radiation (CPR)

The CPR is a descriptive term referring to a massive monophyletic radiation of candidate phyla that exists within the Bacterial domain. It includes two main clades, the Microgenomates and Parcubacteria groups, each containing the eponymous superphyla and a few other phyla.

Patescibacteria

The superphylum Patescibacteria was originally proposed to encompass the phyla

Microgenomates The Microgenomates are a proposed supergroup of bacterial candidate phyla in the Candidate phyla radiation, Candidate Phyla Radiation. Organisms from the Microgenomates group have never been cultured in a lab; rather they have only been detected ...

(OP11), Parcubacteria (OD1), and

Gracilibacteria Gracilibacteria is a bacterial candidate phylum formerly known as GN02, BD1-5, or SN-2. It is part of the Candidate Phyla Radiation and the Patescibacteria group. The first representative of the Gracilibacteria phylum was reported in 1999 after ...

(GNO2 / BD1-5). More recent phylogenetic analyses show that the last common ancestor of these taxa is the same node as that of CPR.

Sphingobacteria

The Sphingobacteria (FCB group) includes Bacteroidota, Calditrichota, Chlorobiota, candidate phylum "Cloacimonetes", Fibrobacterota, Gemmatimonadota, Ignavibacteriota, candidate phylum "Latescibacteria", candidate phylum "Marinimicrobia", and candidate phylum "Zixibacteria".

Microgenomates

Microgenomates was originally thought to be a single phylum although evidence suggests it actually encompasses over 11 bacterial phyla, including Curtisbacteria, Daviesbacteria, Levybacteria, Gottesmanbacteria, Woesebacteria, Amesbacteria, Shapirobacteria, Roizmanbacteria, Beckwithbacteria, Collierbacteria, Pacebacteria.

Parcubacteria

Parcubacteria was originally described as a single phylum using fewer than 100 16S rRNA sequences. With a greater diversity of 16S rRNA sequences from uncultured organisms now available, it is estimated it may consist of up to 28 bacterial phyla. In line with this, over 14 phyla have now been described within the Parcubacteria group, including Kaiserbacteria, Adlerbacteria, Campbellbacteria, Nomurabacteria, Giovannonibacteria, Wolfebacteria, Jorgensenbacteria, Yanofskybacteria, Azambacteria, Moranbacteria, Uhrbacteria, and Magasanikbacteria.

Proteobacteria

It has been proposed that some classes of the phylum

Proteobacteria Pseudomonadota (synonym Proteobacteria) is a major phylum of Gram-negative bacteria. The renaming of phyla in 2021 remains controversial among microbiologists, many of whom continue to use the earlier names of long standing in the literature. The ...

may be phyla in their own right, which would make Proteobacteria a superphylum. For example, the Deltaproteobacteria group does not consistently form a monophyletic lineage with the other Proteobacteria classes.

Planctobacteria

The

Planctobacteria The PVC superphylum is a superphylum of bacteria named after its three important members, Planctomycetota, Verrucomicrobiota, and Chlamydiota. Cavalier-Smith postulated that the PVC bacteria probably lost or reduced their peptidoglycan cell wall ...

(PVC group) includes Chlamydiota,

Lentisphaerota Lentisphaerota is a phylum of bacteria closely related to Chlamydiota and Verrucomicrobiota. It includes two monotypic orders Lentisphaerales and Victivallales. Phylum members can be aerobic or anaerobic and fall under two distinct phenotyp ...

, candidate phylum " Omnitrophica",

Planctomycetota The Planctomycetota are a phylum of widely distributed bacteria, occurring in both aquatic and terrestrial habitats. They play a considerable role in global carbon and nitrogen cycles, with many species of this phylum capable of anaerobic ammoniu ...

, candidate phylum "

Poribacteria Poribacteria are a candidate phylum of bacteria originally discovered in the microbiome of marine sponges (''Porifera''). Poribacteria are Gram-negative primarily aerobic mixotrophs with the ability for oxidative phosphorylation, glycolysis, ...

", and

Verrucomicrobiota Verrucomicrobiota is a phylum of Gram-negative bacteria that contains only a few described species. The species identified have been isolated from fresh water, marine and soil environments and human faeces. A number of as-yet uncultivated species ...

Terrabacteria

The proposed superphylum,

Terrabacteria Terrabacteria is a taxon containing approximately two-thirds of prokaryote species, including those in the gram positive phyla (Actinomycetota and Bacillota) as well as the phyla "Cyanobacteria", Chloroflexota, and Deinococcota. It derives its ...

, includes

Actinomycetota The ''Actinomycetota'' (or ''Actinobacteria'') are a phylum of all gram-positive bacteria. They can be terrestrial or aquatic. They are of great economic importance to humans because agriculture and forests depend on their contributions to soi ...

, "

Cyanobacteria Cyanobacteria (), also known as Cyanophyta, are a phylum of gram-negative bacteria that obtain energy via photosynthesis. The name ''cyanobacteria'' refers to their color (), which similarly forms the basis of cyanobacteria's common name, blu ...

"/"

Melainabacteria Melainabacteria is a phylum related to Cyanobacteria. Organisms belonging to this phylum have been found in the human gut and various aquatic habitats such as groundwater. By analyzing genomes of Melainabacteria, predictions are possible about th ...

group A group is a number of persons or things that are located, gathered, or classed together. Groups of people * Cultural group, a group whose members share the same cultural identity * Ethnic group, a group whose members share the same ethnic ide ...

Deinococcota ''Deinococcota'' (synonym, ''Deinococcus-Thermus'') is a phylum of bacteria with a single class, ''Deinococci'', that are highly resistant to environmental hazards, also known as extremophiles. These bacteria have thick cell walls that give them ...

Chloroflexota The Chloroflexota are a phylum of bacteria containing isolates with a diversity of phenotypes, including members that are aerobic thermophiles, which use oxygen and grow well in high temperatures; anoxygenic phototrophs, which use light for phot ...

Bacillota The Bacillota (synonym Firmicutes) are a phylum of bacteria, most of which have gram-positive cell wall structure. The renaming of phyla such as Firmicutes in 2021 remains controversial among microbiologists, many of whom continue to use the earl ...

, and candidate phylum OP10.

Cryptic superphyla

Several candidate phyla (

, Omnitrophica, Parcubacteria, and

Saccharibacteria Saccharibacteria, formerly known as ''TM7'', is a major bacterial lineage. It was discovered through 16S rRNA sequencing . TM7x from the human oral cavity was cultivated and revealed that TM7x is an extremely small coccus (200-300 nm) an ...

) and several accepted phyla (

Elusimicrobiota The phylum Elusimicrobiota, previously known as "Termite Group 1", has been shown to be widespread in different ecosystems like marine environment, sewage sludge, contaminated sites and soils, and toxic wastes. The high abundance of Elusimicrobio ...

Caldisericota ''Caldisericum exile'' is a species of bacteria sufficiently distinct from other bacteria to be placed in its own family (biology), family, order (biology), order, class (biology), class and phylum. It is the first member of the thermophilic cand ...

, and

Armatimonadota ''Armatimonadota'' is a phylum of gram-negative bacteria. History ''Armatimonadota'' was originally described solely on the basis of environmental 16S rRNA gene clone sequences, and was temporarily titled candidate phylum OP10. However, in 20 ...

) have been suggested to actually be superphyla that were incorrectly described as phyla because rules for defining a bacterial phylum are lacking or due to a lack of sequence diversity in databases when the phylum was first established. For example, it is suggested that candidate phylum Parcubacteria is actually a superphylum that encompasses 28 subordinate phyla and that phylum Elusimicrobia is actually a superphylum that encompasses 7 subordinate phyla.

Historical perspective

Given the rich history of the field of bacterial taxonomy and the rapidity of changes therein in modern times, it is often useful to have a historical perspective on how the field has progressed in order to understand references to antiquated definitions or concepts. When bacterial nomenclature was controlled under the

Botanical Code The ''International Code of Nomenclature for algae, fungi, and plants'' (ICN) is the set of rules and recommendations dealing with the formal botanical names that are given to plants, fungi and a few other groups of organisms, all those "trad ...

, the term ''division'' was used, but now that bacterial nomenclature (with the exception of

cyanobacteria Cyanobacteria (), also known as Cyanophyta, are a phylum of gram-negative bacteria that obtain energy via photosynthesis. The name ''cyanobacteria'' refers to their color (), which similarly forms the basis of cyanobacteria's common name, blu ...

) is controlled under the

Bacteriological Code The International Code of Nomenclature of Prokaryotes (ICNP) formerly the International Code of Nomenclature of Bacteria (ICNB) or Bacteriological Code (BC) governs the scientific names for Bacteria and Archaea.P. H. A. Sneath, 2003. A short histor ...

, the term ''phylum'' is preferred. In 1987,

Carl Woese Carl Richard Woese (; July 15, 1928 – December 30, 2012) was an American microbiologist and biophysicist. Woese is famous for defining the Archaea (a new domain of life) in 1977 through a pioneering phylogenetic taxonomy of 16S ribosomal RNA, ...

, regarded as the forerunner of the molecular phylogeny revolution, divided Eubacteria into 11 divisions based on

16S ribosomal RNA 16 S ribosomal RNA (or 16 S rRNA) is the RNA component of the 30S subunit of a prokaryotic ribosome (SSU rRNA). It binds to the Shine-Dalgarno sequence and provides most of the SSU structure. The genes coding for it are referred to as 16S rRNA ...

(SSU) sequences, listed below. *

Purple Bacteria Purple bacteria or purple photosynthetic bacteria are Gram-negative proteobacteria that are phototrophic, capable of producing their own food via photosynthesis. They are pigmented with bacteriochlorophyll ''a'' or ''b'', together with various ...

and their relatives (later renamed

) ** alpha subdivision (

purple non-sulfur bacteria Purple bacteria or purple photosynthetic bacteria are Gram-negative proteobacteria that are phototrophic, capable of producing their own food via photosynthesis. They are pigmented with bacteriochlorophyll ''a'' or ''b'', together with various ...

rhizobacteria Rhizobacteria are root-associated bacteria that can have a detrimental (parasitic varieties), neutral or beneficial effect on plant growth. The name comes from the Greek ''rhiza'', meaning root. The term usually refers to bacteria that form symbio ...

, ''

Agrobacterium ''Agrobacterium'' is a genus of Gram-negative bacteria established by H. J. Conn that uses horizontal gene transfer to cause tumors in plants. '' Agrobacterium tumefaciens'' is the most commonly studied species in this genus. ''Agrobacterium'' i ...

'', ''

Rickettsiae ''Rickettsia'' is a genus of nonmotile, gram-negative, nonspore-forming, highly pleomorphic bacteria that may occur in the forms of cocci (0.1 μm in diameter), bacilli (1–4 μm long), or threads (up to about 10 μm long). The term "rickett ...

'', ''

Nitrobacter ''Nitrobacter'' is a genus comprising rod-shaped, gram-negative, and chemoautotrophic bacteria. The name ''Nitrobacter'' derives from the Latin neuter gender noun ''nitrum, nitri'', alkalis; the Ancient Greek noun βακτηρία'','' βακτ� ...

'') ** beta subdivision ('' Rhodocyclus'', (some) ''

Thiobacillus ''Thiobacillus'' is a genus of Gram-negative Betaproteobacteria. ''Thiobacillus thioparus'' is the type species of the genus, and the type strain thereof is the StarkeyT strain, isolated by Robert Starkey in the 1930s from a field at Rutgers Un ...

'', ''

Alcaligenes ''Alcaligenes'' is a genus of Gram-negative, Aerobic organism, aerobic, Bacillus (shape), rod-shaped bacteria. The species are motile with amphitrichous flagella and rarely nonmotile. It is a genus of Non-fermenter, non-fermenting bacteria (in t ...

'', ''

Spirillum ''Spirillum'' is a genus of Gram-negative bacteria in the family '' Spirillaceae'' of the '' Nitrosomonadales'' of the ''Betaproteobacteria''.Garrity, George M.; Brenner, Don J.; Krieg, Noel R.; Staley, James T. (eds.) (2005). Bergey's Manual o ...

'', '' Nitrosovibrio'') ** gamma subdivision (enterics, fluorescent pseudomonads,

purple sulfur bacteria The purple sulfur bacteria (PSB) are part of a group of Pseudomonadota capable of photosynthesis, collectively referred to as purple bacteria. They are anaerobic or microaerophilic, and are often found in stratified water environments including ...

, ''

Legionella ''Legionella'' is a genus of pathogenic gram-negative bacteria that includes the species '' L. pneumophila'', causing legionellosis (all illnesses caused by ''Legionella'') including a pneumonia-type illness called Legionnaires' disease and a mil ...

'', (some) '' Beggiatoa'') ** delta subdivision (Sulfur and sulfate reducers (''

Desulfovibrio ''Desulfovibrio'' is a genus of Gram-negative sulfate-reducing bacteria. ''Desulfovibrio'' species are commonly found in aquatic environments with high levels of organic material, as well as in water-logged soils, and form major community member ...

''),

Myxobacteria The myxobacteria ("slime bacteria") are a group of bacteria that predominantly live in the soil and feed on insoluble organic substances. The myxobacteria have very large genomes relative to other bacteria, e.g. 9–10 million nucleotides except ...

, '' Bdellovibrio'') *

Gram-positive In bacteriology, gram-positive bacteria are bacteria that give a positive result in the Gram stain test, which is traditionally used to quickly classify bacteria into two broad categories according to their type of cell wall. Gram-positive bacte ...

Eubacteria ** High-G+C species (later renamed Actinobacteria) (''

Actinomyces ''Actinomyces'' is a genus of the Actinomycetia class of bacteria. They all are gram-positive. ''Actinomyces'' species are facultatively anaerobic and they grow best under anaerobic conditions. ''Actinomyces'' species may form endospores, an ...

'', ''

Streptomyces ''Streptomyces'' is the largest genus of Actinomycetota and the type genus of the family Streptomycetaceae. Over 500 species of ''Streptomyces'' bacteria have been described. As with the other Actinomycetota, streptomycetes are gram-positive, ...

'', '' Arthrobacter'', ''

Micrococcus ''Micrococcus'' (mi’ krō kŏk’ Əs) is a genus of bacteria in the Micrococcaceae family. ''Micrococcus'' occurs in a wide range of environments, including water, dust, and soil. Micrococci have Gram-positive spherical cells ranging from abo ...

'', ''

Bifidobacterium ''Bifidobacterium'' is a genus of gram-positive, nonmotile, often branched anaerobic bacteria. They are ubiquitous inhabitants of the gastrointestinal tract though strains have been isolated from the vagina and mouth ('' B. dentium'') of mammal ...

'') ** Low-G+C species (later renamed

Firmicutes The Bacillota (synonym Firmicutes) are a phylum of bacteria, most of which have gram-positive cell wall structure. The renaming of phyla such as Firmicutes in 2021 remains controversial among microbiologists, many of whom continue to use the earl ...

) ('' Clostridium'', ''

Peptococcus ''Peptococcus'' is a Gram-positive bacterium genus in the family Peptococcaceae. Species in the genus are part of the human microbiome, especially in the bacteria that form the gut flora. They are part of the flora of the mouth, upper respirator ...

'', ''

Bacillus ''Bacillus'' (Latin "stick") is a genus of Gram-positive, rod-shaped bacteria, a member of the phylum ''Bacillota'', with 266 named species. The term is also used to describe the shape (rod) of other so-shaped bacteria; and the plural ''Bacilli ...

'', ''

Mycoplasma ''Mycoplasma'' is a genus of bacteria that, like the other members of the class ''Mollicutes'', lack a cell wall around their cell membranes. Peptidoglycan (murein) is absent. This characteristic makes them naturally resistant to antibiotics ...

'') ** Photosynthetic species (''

Heliobacteria Heliobacteria are a unique subset of prokaryotic bacteria that process light for energy. Distinguishable from other phototrophic bacteria, they utilize a unique photosynthetic pigment, bacteriochlorophyll ''g'' and are the only known Gram-posit ...

'') ** Species with Gram-negative walls (''

Megasphaera ''Megasphaera'' is a genus of Bacillota bacteria classified within the class Negativicutes. This classification has been reexamined.Yutin N, Galperin MY (2013) A genomic update on Clostridial phylogeny: Gram-negative spore formers and other mi ...

'', ''

Sporomusa ''Sporomusa'' is a genus of Bacillota bacteria classified within the class Negativicutes. Further examination of members of this clade suggest that this group are actually members of the ''Clostridia''.Yutin N, Galperin MY (2013) A genomic upda ...

'') *

and chloroplasts (''

Aphanocapsa ''Aphanocapsa'' is a genus of cyanobacteria belonging to the family Merismopediaceae The Merismopediaceae are a family of cyanobacteria Cyanobacteria (), also known as Cyanophyta, are a phylum of gram-negative bacteria that obtain ene ...

'', ''

Oscillatoria ''Oscillatoria'' is a genus of filamentous cyanobacterium which is often found in freshwater environments, such as hot springs, and appears blue-green. Its name refers to the oscillating motion of its filaments as they slide against each other ...

'', ''

Nostoc ''Nostoc'', also known as star jelly, troll’s butter, spit of moon, fallen star, witch's butter (not to be confused with the fungi commonly known as witches' butter), and witch’s jelly, is the most common genus of cyanobacteria found in var ...

'', ''

Synechococcus ''Synechococcus'' (from the Greek ''synechos'', in succession, and the Greek ''kokkos'', granule) is a unicellular cyanobacterium that is very widespread in the marine environment. Its size varies from 0.8 to 1.5 µm. The photosynthetic c ...

'', '' Gloeobacter'', ''

Prochloron ''Prochloron'' (from the Greek ''pro'' (before) and the Greek ''chloros'' (green) ) is a genus of unicellular oxygenic photosynthetic prokaryotes commonly found as an extracellular symbiont on coral reefs, particularly in didemnid ascidians (sea ...

'') *

Spirochetes A spirochaete () or spirochete is a member of the phylum Spirochaetota (), (synonym Spirochaetes) which contains distinctive diderm (double-membrane) gram-negative bacteria, most of which have long, helically coiled (corkscrew-shaped or ...

and relatives ** Spirochetes (''

Spirochaeta ''Spirochaeta'' is a genus of bacteria classified within the phylum Spirochaetota.See the List of Prokaryotic names with Standing in Nomenclature. Data extracted from See the NCBIbr>webpage on SpirochaetesData extracted from Phylogeny Taxono ...

'', ''

Treponema ''Treponema'' is a genus of spiral-shaped bacteria. The major treponeme species of human pathogens is ''Treponema pallidum'', whose subspecies are responsible for diseases such as syphilis, bejel, and yaws. ''Treponema carateum'' is the cause o ...

'', ''

Borrelia ''Borrelia'' is a genus of bacteria of the spirochete phylum. Several species cause Lyme disease, also called Lyme borreliosis, a zoonotic, vector-borne disease transmitted by ticks. Other species of ''Borrelia'' cause relapsing fever, and are tr ...

'') ** Leptospiras (''

Leptospira ''Leptospira'' ( grc, leptos, italics=yes, 'fine, thin' and la, spira, links=no, 'coil') is a genus of spirochaete bacteria, including a small number of pathogenic and saprophytic species. ''Leptospira'' was first observed in 1907 in kidney t ...

'', '' Leptonema'') *

Green sulfur bacteria The green sulfur bacteria are a phylum of obligately anaerobic photoautotrophic bacteria that metabolize sulfur. Green sulfur bacteria are nonmotile (except ''Chloroherpeton thalassium'', which may glide) and capable of anoxygenic photosynthe ...

(''

Chlorobium ''Chlorobium'' is a genus of green sulfur bacteria. They are photolithotrophic oxidizers of sulfur and most notably utilise a noncyclic electron transport chain to reduce NAD+. Photosynthesis is achieved using a Type 1 Reaction Centre using ba ...

'', '' Chloroherpeton'') *

Bacteroides ''Bacteroides'' is a genus of Gram-negative, obligate anaerobic bacteria. ''Bacteroides'' species are non endospore-forming bacilli, and may be either motile or nonmotile, depending on the species. The DNA base composition is 40–48% GC. Unusu ...

Flavobacteria The class Flavobacteriia is composed of a single order of environmental bacteria. According to Bernardet ''et al''., Flavobacteriia are Gram-negative aerobic rods, 2–5 μm long, 0.3–0.5 μm wide, with rounded or tapered ends ...

and relatives (later renamed

Bacteroidetes The phylum Bacteroidota (synonym Bacteroidetes) is composed of three large classes of Gram-negative, nonsporeforming, anaerobic or aerobic, and rod-shaped bacteria that are widely distributed in the environment, including in soil, sediments, a ...

** Bacteroides (''

'', ''

Fusobacterium ''Fusobacterium'' is a genus of anaerobic, Gram-negative, non-sporeforming bacteria belonging to Gracilicutes. Individual cells are slender, rod-shaped bacilli with pointed ends. Strains of ''Fusobacterium'' cause several human diseases, includin ...

'') ** Flavobacterium group (''

Flavobacterium ''Flavobacterium'' is a genus of Gram-negative, nonmotile and motile, rod-shaped bacteria that consists of 130 recognized species. Flavobacteria are found in soil and fresh water in a variety of environments. Several species are known to cause ...

'', ''

Cytophaga ''Cytophaga'' is a genus of Gram-negative, gliding, rod-shaped bacteria. This bacterium is commonly found in soil, rapidly digests crystalline cellulose ''C. hutchinsonii'' is able to use its gliding motility to move quickly over surfaces. A ...

'', '' Saprospira'', ''

Flexibacter ''Flexibacter'' is a genus of bacteria Bacteria (; singular: bacterium) are ubiquitous, mostly free-living organisms often consisting of one biological cell. They constitute a large domain of prokaryotic microorganisms. Typically a f ...

'') * Planctomyces and relatives (later renamed

Planctomycetes The Planctomycetota are a phylum of widely distributed bacteria, occurring in both aquatic and terrestrial habitats. They play a considerable role in global carbon and nitrogen cycles, with many species of this phylum capable of anaerobic ammoniu ...

) ** Planctomyces group ('' Planctomyces'', '' Pasteuria'' 'sic'' ** Thermophiles ('' Isocystis pallida'') *

Chlamydiae The Chlamydiota (synonym Chlamydiae) are a bacterial phylum and class whose members are remarkably diverse, including pathogens of humans and animals, symbionts of ubiquitous protozoa, and marine sediment forms not yet well understood. All of ...

(''

Chlamydia psittaci ''Chlamydia psittaci'' is a lethal intracellular parasite, intracellular bacterial species that may cause Endemism, endemic Bird, avian chlamydiosis, epizootic outbreaks in mammals, and respiratory psittacosis in humans. Potential hosts include ...

'', ''

Chlamydia trachomatis ''Chlamydia trachomatis'' (), commonly known as chlamydia, is a bacterium that causes chlamydia, which can manifest in various ways, including: trachoma, lymphogranuloma venereum, nongonococcal urethritis, cervicitis, salpingitis, pelvic inflamma ...

'') *Radioresistant micrococci and relatives (later renamed Deinococcus–Thermus or

Thermi Thermi ( el, Θέρμη) is a Southeastern suburb and a municipality in the Thessaloniki regional unit, Greece. Its population was 53,201 at the 2011 census. It is located over the site of ancient Therma. Municipality The municipality Ther ...

) ** Deinococcus group (''

Deinococcus radiodurans ''Deinococcus radiodurans'' is an extremophilic bacterium and one of the most radiation-resistant organisms known. It can survive cold, dehydration, vacuum, and acid, and therefore is known as a polyextremophile. It has been listed as the world ...

'') ** Thermophiles (''

Thermus aquaticus ''Thermus aquaticus'' is a species of bacteria that can tolerate high temperatures, one of several thermophilic bacteria that belong to the ''Deinococcota'' phylum. It is the source of the heat-resistant enzyme ''Taq'' DNA polymerase, one of th ...

'') *Green non-sulfur bacteria and relatives (later renamed Chloroflexi) ** Chloroflexus group (''

Chloroflexus Chloroflexales is an order of bacteria in the class Chloroflexia. Taxonomy The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI). * ...

'', ''

Herpetosiphon ''Herpetosiphon'' is a genus of bacteria in the family '' Herpetosiphonaceae''. Phylogeny References {{Taxonbar, from=Q16965551 Phototrophic bacteria Bacteria genera Chloroflexota ...

'') ** Thermomicrobium group ('' Thermomicrobium roseum'') *

Thermotogae The Thermotogota are a phylum of the domain (biology), domain Bacteria. The phylum Thermotogota is composed of Gram-negative staining, anaerobic organism, anaerobic, and mostly thermophilic and hyperthermophilic bacteria.Gupta, RS (2014) The Phyl ...

(''

Thermotoga maritima ''Thermotoga maritima'' is a hyperthermophilic, anaerobic organism that is a member of the order Thermotogales. ''T. maritima'' is well known for its ability to produce hydrogen (clean energy) and it is the only fermentative bacterium that has be ...

'') Traditionally,

phylogeny A phylogenetic tree (also phylogeny or evolutionary tree Felsenstein J. (2004). ''Inferring Phylogenies'' Sinauer Associates: Sunderland, MA.) is a branching diagram or a tree showing the evolutionary relationships among various biological spec ...

was inferred and

taxonomy Taxonomy is the practice and science of categorization or classification. A taxonomy (or taxonomical classification) is a scheme of classification, especially a hierarchical classification, in which things are organized into groups or types. ...

established based on studies of morphology. The advent of

molecular phylogenetics Molecular phylogenetics () is the branch of phylogeny that analyzes genetic, hereditary molecular differences, predominantly in DNA sequences, to gain information on an organism's evolutionary relationships. From these analyses, it is possible to ...

has allowed for improved elucidation of the evolutionary relationship of species by analyzing their DNA and

protein Proteins are large biomolecules and macromolecules that comprise one or more long chains of amino acid residues. Proteins perform a vast array of functions within organisms, including catalysing metabolic reactions, DNA replication, respo ...

sequences, for example their

ribosomal DNA Ribosomal DNA (rDNA) is a DNA sequence that codes for ribosomal RNA. These sequences regulate transcription initiation and amplification, and contain both transcribed and non-transcribed spacer segments. In the human genome there are 5 chromos ...

. The lack of easily accessible morphological features, such as those present in

animals Animals are multicellular, eukaryotic organisms in the biological kingdom Animalia. With few exceptions, animals consume organic material, breathe oxygen, are able to move, can reproduce sexually, and go through an ontogenetic stage in ...

and

plants Plants are predominantly Photosynthesis, photosynthetic eukaryotes of the Kingdom (biology), kingdom Plantae. Historically, the plant kingdom encompassed all living things that were not animals, and included algae and fungi; however, all curr ...

, hampered early efforts of classification and resulted in erroneous, distorted and confused classification, an example of which, noted

, is ''

Pseudomonas ''Pseudomonas'' is a genus of Gram-negative, Gammaproteobacteria, belonging to the family Pseudomonadaceae and containing 191 described species. The members of the genus demonstrate a great deal of metabolic diversity and consequently are able ...

'' whose etymology ironically matched its taxonomy, namely "false unit". Many bacterial taxa were re-classified or re-defined using molecular phylogenetics. The advent of molecular sequencing technologies has allowed for the recovery of genomes directly from environmental samples (i.e. bypassing culturing), leading to rapid expansion of our knowledge of the diversity of bacterial phyla. These techniques are genome-resolved

metagenomics Metagenomics is the study of genetic material recovered directly from environmental or clinical samples by a method called sequencing. The broad field may also be referred to as environmental genomics, ecogenomics, community genomics or microb ...

and single-cell genomics.

Footnotes

References

{{DEFAULTSORT:Bacterial Phyla

List of bacterial phyla

Supergroups

Candidate phyla radiation (CPR)

Patescibacteria

Sphingobacteria

Microgenomates

Parcubacteria

Proteobacteria

Planctobacteria

Terrabacteria

Cryptic superphyla

Historical perspective

See also

Footnotes

References