Neuroimaging Neuroimaging is the use of quantitative (computational) techniques to study the structure and function of the central nervous system, developed as an objective way of scientifically studying the healthy human brain in a non-invasive manner. Incr ...

software is used to study the structure and function of the brain. To see an

NIH The National Institutes of Health, commonly referred to as NIH (with each letter pronounced individually), is the primary agency of the United States government responsible for biomedical and public health research. It was founded in the late 1 ...

Blueprint for Neuroscience Research funded clearinghouse of many of these software applications, as well as hardware, etc. go to the NITRC web site. *

3D Slicer 3D Slicer (Slicer) is a free and open source software package for image analysis and scientific visualization. Slicer is used in a variety of medical applications, including autism, multiple sclerosis, systemic lupus erythematosus, prostate ca ...

Extensible, free open source multi-purpose software for visualization and analysis. * Amira 3D visualization and analysis software * Analysis of Functional NeuroImages (AFNI) * Analyze developed by the Biomedical Imaging Resource (BIR) at Mayo Clinic. *

Brain Image Analysis Package Functional magnetic resonance imaging or functional MRI (fMRI) measures brain activity by detecting changes associated with blood flow. This technique relies on the fact that cerebral blood flow and neuronal activation are coupled. When an area o ...

CamBA Camba is a word historically used in Bolivia to refer to the indigenous population in the eastern tropical region of the country, or to those born in the area of Santa Cruz, Beni, and Pando. Nowadays, the term "Camba" is used predominantly to ...

Caret Caret is the name used familiarly for the character , provided on most QWERTY keyboards by typing . The symbol has a variety of uses in programming and mathematics. The name "caret" arose from its visual similarity to the original proofreade ...

Van Essen Lab, Washington University in St. Louis *

CONN (functional connectivity toolbox) CONN is a Matlab-based cross-platform imaging software for the computation, display, and analysis of functional connectivity in fMRI (functional Magnetic Resonance Imaging) in the resting state and during task. CONN is available as an SPM to ...

Diffusion Imaging in Python (DIPY)

DL+DiReCT
*

EEGLAB EEGLAB is a MATLAB toolbox distributed under the free BSD license for processing data from electroencephalography (EEG), magnetoencephalography (MEG), and other electrophysiological signals. Along with all the basic processing tools, EEGLAB implemen ...

FMRIB Software Library The FMRIB Software Library, abbreviated FSL, is a software library containing image analysis and statistical tools for functional Functional may refer to: * Movements in architecture: ** Functionalism (architecture) ** Form follows function * ...

(FSL) *

FreeSurfer FreeSurfer is a brain imaging software package originally developed by Bruce Fischl, Anders Dale, Martin Sereno, and Doug Greve. Development and maintenance of FreeSurfer is now the primary responsibility of the Laboratory for Computational Neuro ...

Imaris Bitplane is a provider of software for 3D and 4D image analysis for the life sciences. Founded in December 1992, Bitplane operates out of three offices in Zürich, Switzerland, Belfast, United Kingdom, and South Windsor, Connecticut, United States ...

br>Imaris for Neuroscientists
*

ISAS (Ictal-Interictal SPECT Analysis by SPM) {{Notability, date=April 2012 ISAS ( Ictal-Interictal SPECT Analysis by SPM) is an objective tool for analyzing ictal vs. interictal SPECT scans. The goal of ictal SPECT is to localize the region of seizure onset for epilepsy surgery planning. IS ...

LONI Pipeline The LONI Pipeline is a free distributed system for designing, executing, monitoring and sharing scientific workflowsRex, D. E., Ma, J.Q., and Toga, A.W. (2003). "The LONI Pipeline Processing Environment." Neuroimage, 19(3), 1033-48.Rex, D. E., S ...

, Laboratory of Neuro Imaging, USC *

Mango A mango is an edible stone fruit produced by the tropical tree '' Mangifera indica''. It is believed to have originated in the region between northwestern Myanmar, Bangladesh, and northeastern India. ''M. indica'' has been cultivated in Sout ...

* NITRC The Neuroimaging Informatics Tools and Resources Clearinghouse. An

funded database of neuroimaging tools *

NeuroKit NeuroKit (''"nk"'') is an open source toolbox for physiological signal processing. The most recent version, ''NeuroKit2'', is written in Python and is available from the PyPI package repository. As of June 2022, the software was used in 94 scient ...

, a Python

open source Open source is source code that is made freely available for possible modification and redistribution. Products include permission to use the source code, design documents, or content of the product. The open-source model is a decentralized sof ...

toolbox for physiological signal processing *

Neurophysiological Biomarker Toolbox The Neurophysiological Biomarker Toolbox (NBT) is an open source MATLAB toolbox for the computation and integration of neurophysiological biomarkers (e.g., biomarkers based on EEG or MEG recordings). The NBT toolbox has so far been used in s ...

PyNets: A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning
(PyNets) *

Seed-based d mapping Seed-based d mapping (formerly Signed differential mapping) or SDM is a statistical technique created by Joaquim Radua for meta-analyzing studies on differences in brain activity or structure which used neuroimaging techniques such as fMRI, VBM, ...

(previously signed differential mapping, SDM): a method for conducting meta-analyses of voxel-based neuroimaging studies. * The

Spinal Cord Toolbox Spinal Cord Toolbox (SCT) is a suite of analysis tools optimized for spinal cord The spinal cord is a long, thin, tubular structure made up of nervous tissue, which extends from the medulla oblongata in the brainstem to the lumbar region of ...

(SCT) is the first comprehensive and open-source software for processing MR images of the spinal cord.Cohen-Adad J, De Leener B, Benhamou M, Cadotte D, Fleet D, Cadotte A, Fehlings MG, Pelletier Paquette JP, Thong W, Taso M, Collins DL, Callot V, Fonov V. Spinal Cord Toolbox: an open-source framework for processing spinal cord MRI data. Proceedings of the 20th Annual Meeting of OHBM, Hamburg, Germany 2014:3633 *

Statistical parametric mapping Statistical parametric mapping (SPM) is a statistical technique for examining differences in brain activity recorded during functional neuroimaging experiments. It was created by Karl Friston. It may alternatively refer to software created by th ...

(SPM)

References

{{DEFAULTSORT:List Of Neuroimaging Software *