Freshwater environmental quality parameters
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Freshwater environmental quality parameters are those chemical, physical or biological parameters that can be used to characterise a freshwater body. Because almost all water bodies are dynamic in their composition, the relevant quality parameters are typically expressed as a range of expected concentrations. They include the natural and man-made
chemical A chemical substance is a form of matter having constant chemical composition and characteristic properties. Some references add that chemical substance cannot be separated into its constituent elements by physical separation methods, i.e., wi ...
,
biological Biology is the scientific study of life. It is a natural science with a broad scope but has several unifying themes that tie it together as a single, coherent field. For instance, all organisms are made up of cells that process hereditary in ...
and
microbiological Microbiology () is the scientific study of microorganisms, those being unicellular (single cell), multicellular (cell colony), or acellular (lacking cells). Microbiology encompasses numerous sub-disciplines including virology, bacteriology, prot ...
characteristics of
river A river is a natural flowing watercourse, usually freshwater, flowing towards an ocean, sea, lake or another river. In some cases, a river flows into the ground and becomes dry at the end of its course without reaching another body of wate ...
s,
lake A lake is an area filled with water, localized in a basin, surrounded by land, and distinct from any river or other outlet that serves to feed or drain the lake. Lakes lie on land and are not part of the ocean, although, like the much large ...
s and ground-waters, the ways they are measured and the ways that they change. The values or concentrations attributed to such
parameters A parameter (), generally, is any characteristic that can help in defining or classifying a particular system (meaning an event, project, object, situation, etc.). That is, a parameter is an element of a system that is useful, or critical, when ...
can be used to describe the pollution status of an environment, its biotic status or to predict the likelihood or otherwise of a particular organisms being present. Monitoring of environmental quality parameters is a key activity in managing the environment, restoring polluted environments and anticipating the effects of man-made changes on the environment.


Characterisation

The first step in understanding the chemistry of freshwater is to establish the relevant concentrations of the parameters of interest. Conventionally this is done by taking representative samples of the water for subsequent analysis in a laboratory. However, in-situ monitoring using hand-held analytical equipment or using bank-side monitoring stations are also used.


Sampling

Freshwaters are surprisingly difficult to sample because they are rarely
homogeneous Homogeneity and heterogeneity are concepts often used in the sciences and statistics relating to the uniformity of a substance or organism. A material or image that is homogeneous is uniform in composition or character (i.e. color, shape, siz ...
and their quality varies during the day and during the year. In addition the most representative sampling locations are often at a distance from the shore or bank increasing the logistic complexity.


Rivers

Filling a clean bottle with river water is a very simple task, but a single sample is only representative of that point along the river the sample was taken from and at that point in time. Understanding the chemistry of a whole river, or even a significant tributary, requires prior investigation to understand how homogeneous or mixed the flow is and to determine if the quality changes during the course of a day and during the course of a year. Almost all natural rivers will have very significant patterns of change through the day and through the seasons.
Water remote sensing Water Remote Sensing is the observation of water bodies such as lakes, oceans, and rivers from a distance in order to describe their color, state of ecosystem health, and productivity. Water remote sensing studies the color of water through the o ...
offers a spatially continuous tool to improve understanding of spatial and temporal river water quality. Many rivers also have a very large flow that is unseen. This flows through underlying gravel and sand layers and is called hyporheic flow. How much mixing there is between the hyporheic zone and the water in the open channel will depend on a variety of factors, some of which relate to flows leaving
aquifers An aquifer is an underground layer of water-bearing, permeable rock, rock fractures, or unconsolidated materials (gravel, sand, or silt). Groundwater from aquifers can be extracted using a water well. Aquifers vary greatly in their characterist ...
which may have been storing water for many years.


Ground-waters

Ground waters by their very nature are often very difficult to access to take a sample. As a consequence the majority of ground-water data comes from samples taken from
spring Spring(s) may refer to: Common uses * Spring (season), a season of the year * Spring (device), a mechanical device that stores energy * Spring (hydrology), a natural source of water * Spring (mathematics), a geometric surface in the shape of a ...
s,
well A well is an excavation or structure created in the ground by digging, driving, or drilling to access liquid resources, usually water. The oldest and most common kind of well is a water well, to access groundwater in underground aquifers. The ...
s, water supply bore-holes and in natural
cave A cave or cavern is a natural void in the ground, specifically a space large enough for a human to enter. Caves often form by the weathering of rock and often extend deep underground. The word ''cave'' can refer to smaller openings such as sea ...
s. In recent decades as the need to understand ground water dynamics has increased, an increasing number or monitoring bore-holes have been drilled into aquifers.


Lakes

Lakes and ponds can be very large and support a complex eco-system in which environmental parameters vary widely in all three physical dimensions and with time. Large lakes in the temperate zone often stratify in the warmer months into a warmer upper layers rich in oxygen and a colder lower layer with low oxygen levels. In the autumn, falling temperatures and occasional high winds result in the mixing of the two layers into a more homogeneous whole. When stratification occurs it not only affects oxygen levels but also many related parameters such as
iron Iron () is a chemical element with symbol Fe (from la, ferrum) and atomic number 26. It is a metal that belongs to the first transition series and group 8 of the periodic table. It is, by mass, the most common element on Earth, right in f ...
,
phosphate In chemistry, a phosphate is an anion, salt, functional group or ester derived from a phosphoric acid. It most commonly means orthophosphate, a derivative of orthophosphoric acid . The phosphate or orthophosphate ion is derived from phospho ...
and
manganese Manganese is a chemical element with the symbol Mn and atomic number 25. It is a hard, brittle, silvery metal, often found in minerals in combination with iron. Manganese is a transition metal with a multifaceted array of industrial alloy use ...
which are all changed in their chemical form by change in the
redox Redox (reduction–oxidation, , ) is a type of chemical reaction in which the oxidation states of substrate (chemistry), substrate change. Oxidation is the loss of Electron, electrons or an increase in the oxidation state, while reduction ...
potential of the environment. Lakes also receive waters, often from many different sources with varying qualities. Solids from stream inputs will typically settle near the mouth of the stream and depending on a variety of factors the incoming water may float over the surface of the lake, sink beneath the surface or rapidly mix with the lake water. All of these phenomena can skew the results of any environmental monitoring unless the process are well understood.


Mixing zones

Where two rivers meet at a confluence there exists a mixing zone. A mixing zone may be very large and extend for many miles as in the case of the
Mississippi Mississippi () is a state in the Southeastern region of the United States, bordered to the north by Tennessee; to the east by Alabama; to the south by the Gulf of Mexico; to the southwest by Louisiana; and to the northwest by Arkansas. Miss ...
and
Missouri Missouri is a U.S. state, state in the Midwestern United States, Midwestern region of the United States. Ranking List of U.S. states and territories by area, 21st in land area, it is bordered by eight states (tied for the most with Tennessee ...
rivers in the
United States The United States of America (U.S.A. or USA), commonly known as the United States (U.S. or US) or America, is a country primarily located in North America. It consists of 50 states, a federal district, five major unincorporated territorie ...
and the
River Clwyd The River Clwyd (Welsh: ''Afon Clwyd'') is a river in Wales that rises in the Clocaenog Forest () northwest of Corwen. Its total length is . It flows due south until, at Melin-y-wig, it veers north-eastwards, tracking the A494 and passing t ...
and
River Elwy The River Elwy (''Afon Elwy'' in Welsh) is a river in Wales forming a tributary to the River Clwyd. The source of the river is sometimes said to be on the northern flank of Moel Seisiog, south-east of Llanrwst, at Ordnance Survey grid reference S ...
in
North Wales , area_land_km2 = 6,172 , postal_code_type = Postcode , postal_code = LL, CH, SY , image_map1 = Wales North Wales locator map.svg , map_caption1 = Six principal areas of Wales common ...
. In a mixing zone water chemistry may be very variable and can be difficult to predict. The chemical interactions are not just simple mixing but may be complicated by biological processes from submerged macrophytes and by water joining the channel from the hyporheic zone or from springs draining an aquifer.


Geological inputs

The geology that underlies a river or lake has a major impact on its chemistry. A river flowing across very ancient
precambrian The Precambrian (or Pre-Cambrian, sometimes abbreviated pꞒ, or Cryptozoic) is the earliest part of Earth's history, set before the current Phanerozoic Eon. The Precambrian is so named because it preceded the Cambrian, the first period of the ...
schists Schist ( ) is a medium-grained metamorphic rock showing pronounced schistosity. This means that the rock is composed of mineral grains easily seen with a low-power hand lens, oriented in such a way that the rock is easily split into thin flakes o ...
is likely to have dissolved very little from the rocks and maybe similar to de-ionised water at least in the headwaters. Conversely a river flowing through
chalk Chalk is a soft, white, porous, sedimentary carbonate rock. It is a form of limestone composed of the mineral calcite and originally formed deep under the sea by the compression of microscopic plankton that had settled to the sea floor. Chalk ...
hills, and especially if its source is in the chalk, will have a high concentration of
carbonate A carbonate is a salt of carbonic acid (H2CO3), characterized by the presence of the carbonate ion, a polyatomic ion with the formula . The word ''carbonate'' may also refer to a carbonate ester, an organic compound containing the carbonate g ...
s and
bicarbonate In inorganic chemistry, bicarbonate (IUPAC-recommended nomenclature: hydrogencarbonate) is an intermediate form in the deprotonation of carbonic acid. It is a polyatomic anion with the chemical formula . Bicarbonate serves a crucial biochemic ...
s of
Calcium Calcium is a chemical element with the symbol Ca and atomic number 20. As an alkaline earth metal, calcium is a reactive metal that forms a dark oxide-nitride layer when exposed to air. Its physical and chemical properties are most similar to ...
and possibly
Magnesium Magnesium is a chemical element with the symbol Mg and atomic number 12. It is a shiny gray metal having a low density, low melting point and high chemical reactivity. Like the other alkaline earth metals (group 2 of the periodic ta ...
. As a river progresses along its course it may pass through a variety of geological types and it may have inputs from aquifers that do not appear on the surface anywhere in the locality.


Atmospheric inputs

Oxygen is probably the most important chemical constituent of surface water chemistry, as all
aerobic organism Aerobic means "requiring air," in which "air" usually means oxygen. Aerobic may also refer to * Aerobic exercise, prolonged exercise of moderate intensity * Aerobics, a form of aerobic exercise * Aerobic respiration, the aerobic process of cell ...
s require it for survival. It enters the water mostly via diffusion at the water-air interface. Oxygen's solubility in water decreases as water temperature increases. Fast, turbulent streams expose more of the water's surface area to the air and tend to have low temperatures and thus more oxygen than slow, backwaters. Oxygen is a by-product of photosynthesis, so systems with a high abundance of aquatic algae and plants may also have high concentrations of oxygen during the day. These levels can decrease significantly during the night when primary producers switch to respiration. Oxygen can be limiting if circulation between the surface and deeper layers is poor, if the activity of animals is very high, or if there is a large amount of organic decay occurring such as following Autumn leaf-fall. Most other atmospheric inputs come from man-made or
anthropogenic Anthropogenic ("human" + "generating") is an adjective that may refer to: * Anthropogeny, the study of the origins of humanity Counterintuitively, anthropogenic may also refer to things that have been generated by humans, as follows: * Human im ...
sources the most significant of which are the oxides of sulphur produced by burning sulphur rich fuels such as
coal Coal is a combustible black or brownish-black sedimentary rock, formed as rock strata called coal seams. Coal is mostly carbon with variable amounts of other elements, chiefly hydrogen, sulfur, oxygen, and nitrogen. Coal is formed when dea ...
and
oil An oil is any nonpolar chemical substance that is composed primarily of hydrocarbons and is hydrophobic (does not mix with water) & lipophilic (mixes with other oils). Oils are usually flammable and surface active. Most oils are unsaturated ...
which give rise to
acid rain Acid rain is rain or any other form of precipitation that is unusually acidic, meaning that it has elevated levels of hydrogen ions (low pH). Most water, including drinking water, has a neutral pH that exists between 6.5 and 8.5, but acid ...
. The chemistry of sulphur oxides is complex both in the
atmosphere An atmosphere () is a layer of gas or layers of gases that envelop a planet, and is held in place by the gravity of the planetary body. A planet retains an atmosphere when the gravity is great and the temperature of the atmosphere is low. A s ...
and in river systems. However the effect on the overall chemistry is simple in that it reduces the pH of the water making it more acidic. The pH change is most marked in rivers with very low concentrations of dissolved salts as these cannot
buffer Buffer may refer to: Science * Buffer gas, an inert or nonflammable gas * Buffer solution, a solution used to prevent changes in pH * Buffering agent, the weak acid or base in a buffer solution * Lysis buffer, in cell biology * Metal ion buffer * ...
the effects of the acid input. Rivers downstream of major industrial conurbations are also at greatest risk. In parts of
Scandinavia Scandinavia; Sámi languages: /. ( ) is a subregion#Europe, subregion in Northern Europe, with strong historical, cultural, and linguistic ties between its constituent peoples. In English usage, ''Scandinavia'' most commonly refers to Denmark, ...
and
West Wales West Wales ( cy, Gorllewin Cymru) is not clearly defined as a particular region of Wales. Some definitions of West Wales include only Pembrokeshire, Ceredigion and Carmarthenshire, which historically comprised the Welsh principality of ''Deheuba ...
and
Scotland Scotland (, ) is a country that is part of the United Kingdom. Covering the northern third of the island of Great Britain, mainland Scotland has a border with England to the southeast and is otherwise surrounded by the Atlantic Ocean to the ...
many rivers became so acidic from oxides of sulphur that most fish life was destroyed and pHs as low as pH4 were recorded during critical weather conditions.


Anthropogenic inputs

The majority of rivers on the planet and many lakes have received or are receiving inputs from human-kind's activities. In the industrialised world, many rivers have been very seriously polluted, at least during the 19th and the first half of the 20th centuries. Although in general there has been much improvement in the developed world, there is still a great deal of river pollution apparent on the planet.


Toxicity

In most environmental situations the presence or absence of an organism is determined by a complex web of interactions only some of which will be related to measurable chemical or biological parameters. Flow rate, turbulence, inter and intra specific competition, feeding behaviour,
disease A disease is a particular abnormal condition that negatively affects the structure or function of all or part of an organism, and that is not immediately due to any external injury. Diseases are often known to be medical conditions that a ...
,
parasitism Parasitism is a Symbiosis, close relationship between species, where one organism, the parasite, lives on or inside another organism, the Host (biology), host, causing it some harm, and is Adaptation, adapted structurally to this way of lif ...
,
commensalism Commensalism is a long-term biological interaction (symbiosis) in which members of one species gain benefits while those of the other species neither benefit nor are harmed. This is in contrast with mutualism, in which both organisms benefit fro ...
and
symbiosis Symbiosis (from Greek , , "living together", from , , "together", and , bíōsis, "living") is any type of a close and long-term biological interaction between two different biological organisms, be it mutualistic, commensalistic, or parasit ...
are just a few of the pressures and opportunities facing any organism or population. Most chemical constituents favour some organisms and are less favourable to others. However, there are some cases where a chemical constituent exerts a toxic effect. i.e. where the concentration can kill or severely inhibit the normal functioning of the organism. Where a toxic effect has been demonstrated this may be noted in the sections below dealing with the individual parameters.


Chemical constituents


Colour and turbidity

Often it is the colour of freshwater or how clear or hazy the water is that is the most obvious visual characteristic. Unfortunately neither colour nor turbidity are strong indicators of the overall chemical composition of water. However both colour and turbidity reduce the amount of light penetrating the water and can have significant impact on algae and macrophytes. Some algae in particular are highly dependent on water with low colour and turbidity. Many rivers draining high moor-lands overlain by
peat Peat (), also known as turf (), is an accumulation of partially decayed vegetation or organic matter. It is unique to natural areas called peatlands, bogs, mires, moors, or muskegs. The peatland ecosystem covers and is the most efficien ...
have a very deep yellow brown colour caused by dissolved
humic acid Humic substances (HS) are organic compounds that are important components of humus, the major organic fraction of soil, peat, and coal (and also a constituent of many upland streams, dystrophic lakes, and ocean water). For a long era in the 19th ...
s.


Organic constituents

One of the principal sources of elevated concentrations of organic chemical constituents is from treated sewage. Dissolved organic material is most commonly measured using either the
Biochemical oxygen demand Biochemical oxygen demand (BOD) is the amount of dissolved oxygen (DO) needed (i.e. demanded) by aerobic biological organisms to break down organic material present in a given water sample at a certain temperature over a specific time period. T ...
(BOD) test or the
Chemical oxygen demand In environmental chemistry, the chemical oxygen demand (COD) is an indicative measure of the amount of oxygen that can be consumed by reactions in a measured solution. It is commonly expressed in mass of oxygen consumed over volume of solution whic ...
(COD) test. Organic constituents are significant in river chemistry for the effect that they have on dissolved oxygen concentration and for the impact that individual organic species may have directly on aquatic biota. Any organic and degradable material consumes oxygen as it decomposes. Where organic concentrations are significantly elevated the effects on oxygen concentrations can be significant and as conditions get extreme the river bed may become
anoxic The term anoxia means a total depletion in the level of oxygen, an extreme form of hypoxia or "low oxygen". The terms anoxia and hypoxia are used in various contexts: * Anoxic waters, sea water, fresh water or groundwater that are depleted of diss ...
. Some organic constituents such as synthetic
hormone A hormone (from the Greek participle , "setting in motion") is a class of signaling molecules in multicellular organisms that are sent to distant organs by complex biological processes to regulate physiology and behavior. Hormones are required ...
s,
pesticide Pesticides are substances that are meant to control pests. This includes herbicide, insecticide, nematicide, molluscicide, piscicide, avicide, rodenticide, bactericide, insect repellent, animal repellent, microbicide, fungicide, and lampri ...
s,
phthalate Phthalates (, ), or phthalate esters, are esters of phthalic acid. They are mainly used as plasticizers, i.e., substances added to plastics to increase their flexibility, transparency, durability, and longevity. They are used primarily to soften ...
s have direct metabolic effects on aquatic biota and even on humans drinking water taken from the river. Understanding such constituents and how they can be identified and quantified is becoming of increasing importance in the understanding of freshwater chemistry.


Metals

A wide range of metals may be found in rivers from natural sources where metal ores are present in the rocks over which the river flows or in the aquifers feeding water into the river. However many rivers have an increased load of metals because of industrial activities which include mining and quarrying and the processing and use of metals.


Iron

Iron, usually as Fe+++ is a common constituent of river waters at very low levels. Higher iron concentrations in acidic springs or an anoxic hyporheic zone may cause visible orange/brown staining or semi-gelatinous precipitates of dense orange
iron bacteria Iron-oxidizing bacteria are chemotrophic bacteria that derive energy by oxidizing dissolved ferrous iron. They are known to grow and proliferate in waters containing iron concentrations as low as 0.1 mg/L. However, at least 0.3 ppm of dissolved ox ...
l floc carpeting the river bed. Such conditions are very deleterious to most organisms and can cause serious damage in a river system. Coal mining is also a very significant source of Iron both in mine-waters and from stocking yards of coal and from coal processing. Long abandoned mines can be a highly intractable source of high concentrations of Iron. Low levels of iron are common in spring waters emanating from deep-seated aquifers and maybe regarding as health giving springs. Such springs are commonly called
Chalybeate Chalybeate () waters, also known as ferruginous waters, are mineral spring waters containing salts of iron. Name The word ''chalybeate'' is derived from the Latin word for steel, , which follows from the Greek word . is the singular form of ...
springs and have given rise to a number of
Spa A spa is a location where mineral-rich spring water (and sometimes seawater) is used to give medicinal baths. Spa towns or spa resorts (including hot springs resorts) typically offer various health treatments, which are also known as balneoth ...
towns in Europe and the United States.


Zinc

Zinc Zinc is a chemical element with the symbol Zn and atomic number 30. Zinc is a slightly brittle metal at room temperature and has a shiny-greyish appearance when oxidation is removed. It is the first element in group 12 (IIB) of the periodi ...
is normally associated with metal mining, especially Lead and Silver mining but is also a component pollutant associated with a variety of other metal mining activities and with
Coal mining Coal mining is the process of extracting coal from the ground. Coal is valued for its energy content and since the 1880s has been widely used to generate electricity. Steel and cement industries use coal as a fuel for extraction of iron from ...
. Zinc is toxic at relatively low concentrations to many aquatic organisms. ''Microregma'' starts to show a toxic reaction at concentrations as low as 0.33 mg/L.


Heavy metals

Lead and silver in river waters are commonly found together and associated with lead mining. Impacts from very old mines can be very long-lived. In the
River Ystwyth The River Ystwyth (; cy, Afon Ystwyth "winding river") is a river in Ceredigion, Wales. The length of the main river is . Its catchment area covers . Its source is a number of streams that include the Afon Diliw, located on the west slopes of ...
in
Wales Wales ( cy, Cymru ) is a Countries of the United Kingdom, country that is part of the United Kingdom. It is bordered by England to the Wales–England border, east, the Irish Sea to the north and west, the Celtic Sea to the south west and the ...
for example, the effects of silver and lead mining in the 17th and 18th centuries in the headwaters still causes unacceptably high levels of Zinc and
Lead Lead is a chemical element with the symbol Pb (from the Latin ) and atomic number 82. It is a heavy metal that is denser than most common materials. Lead is soft and malleable, and also has a relatively low melting point. When freshly cu ...
in the river water right down to its confluence with the sea.
Silver Silver is a chemical element with the Symbol (chemistry), symbol Ag (from the Latin ', derived from the Proto-Indo-European wikt:Reconstruction:Proto-Indo-European/h₂erǵ-, ''h₂erǵ'': "shiny" or "white") and atomic number 47. A soft, whi ...
is very toxic even at very low concentrations but leaves no visible evidence of its contamination. Lead is also highly toxic to freshwater organisms and to humans if the water is used as drinking water. As with Silver, Lead pollution is not visible to the naked eye. The
River Rheidol The Afon Rheidol is a river in Ceredigion, Wales, in length. The source is Plynlimon. Receiving an average annual rainfall of , Plynlimon is also the source of both the Wye and the Severn. Geography and geology The Rheidol rises in the headw ...
in west Wales had a major series of lead mines in its headwaters until the end of the 19th century and its mine discharges and waste tips remain to this day. In 1919 - 1921 only 14 species of invertebrates were found in the lower Rheidol when Lead concentrations were between 0.2ppm and 0.5ppm. By 1932 the lead concentration had reduced to 0.02ppm to 0.1ppm because of the abandonment of mining and, at those concentrations, the bottom fauna had stabilized to 103 species including three
leech Leeches are segmented parasitic or predatory worms that comprise the subclass Hirudinea within the phylum Annelida. They are closely related to the oligochaetes, which include the earthworm, and like them have soft, muscular segmented bodie ...
es. Coal mining is also a very significant source of metals, especially Iron, Zinc and
Nickel Nickel is a chemical element with symbol Ni and atomic number 28. It is a silvery-white lustrous metal with a slight golden tinge. Nickel is a hard and ductile transition metal. Pure nickel is chemically reactive but large pieces are slow to ...
particularly where the coal is rich if
pyrites The mineral pyrite (), or iron pyrite, also known as fool's gold, is an iron sulfide with the chemical formula Fe S2 (iron (II) disulfide). Pyrite is the most abundant sulfide mineral. Pyrite's metallic luster and pale brass-yellow hue giv ...
which oxidises on contact with the air producing a very acidic
leachate A leachate is any liquid that, in the course of passing through matter, extracts soluble or suspended solids, or any other component of the material through which it has passed. Leachate is a widely used term in the environmental sciences wher ...
which is able to dissolve metals from the coal. Significant levels of copper are unusual in rivers and where it does it occur the source is most likely to be mining activities, coal stocking, or
pig The pig (''Sus domesticus''), often called swine, hog, or domestic pig when distinguishing from other members of the genus '' Sus'', is an omnivorous, domesticated, even-toed, hoofed mammal. It is variously considered a subspecies of ''Sus s ...
farming. Rarely elevated levels may be of geological origin. Copper is acutely toxic to many freshwater organisms, especially algae, at very low concentrations and significant concentration in river water may have serious adverse effects on the local ecology.


Nitrogen

Nitrogenous compounds have a variety of sources including washout of oxides of nitrogen from the atmosphere, some geological inputs and some from macrophyte and
algal Algae (; singular alga ) is an informal term for a large and diverse group of photosynthetic eukaryotic organisms. It is a polyphyletic grouping that includes species from multiple distinct clades. Included organisms range from unicellular mic ...
nitrogen fixation Nitrogen fixation is a chemical process by which molecular nitrogen (), with a strong triple covalent bond, in the air is converted into ammonia () or related nitrogenous compounds, typically in soil or aquatic systems but also in industry. Atmo ...
. However, for many rivers in the proximity of humans, the largest input is from sewage whether treated or untreated. The nitrogen derives from breakdown products of
protein Proteins are large biomolecules and macromolecules that comprise one or more long chains of amino acid residues. Proteins perform a vast array of functions within organisms, including catalysing metabolic reactions, DNA replication, respo ...
s found in
urine Urine is a liquid by-product of metabolism in humans and in many other animals. Urine flows from the kidneys through the ureters to the urinary bladder. Urination results in urine being excretion, excreted from the body through the urethra. Cel ...
and
faeces Feces ( or faeces), known colloquially and in slang as poo and poop, are the solid or semi-solid remains of food that was not digested in the small intestine, and has been broken down by bacteria in the large intestine. Feces contain a relati ...
. These products, being very soluble, often pass through sewage treatment process and are discharged into rivers as a component of
sewage treatment Sewage treatment (or domestic wastewater treatment, municipal wastewater treatment) is a type of wastewater treatment which aims to remove contaminants from sewage to produce an effluent that is suitable for discharge to the surrounding envir ...
effluent. Nitrogen may be in the form of
nitrate Nitrate is a polyatomic ion A polyatomic ion, also known as a molecular ion, is a covalent bonded set of two or more atoms, or of a metal complex, that can be considered to behave as a single unit and that has a net charge that is not zer ...
,
nitrite The nitrite polyatomic ion, ion has the chemical formula . Nitrite (mostly sodium nitrite) is widely used throughout chemical and pharmaceutical industries. The nitrite anion is a pervasive intermediate in the nitrogen cycle in nature. The name ...
,
ammonia Ammonia is an inorganic compound of nitrogen and hydrogen with the formula . A stable binary hydride, and the simplest pnictogen hydride, ammonia is a colourless gas with a distinct pungent smell. Biologically, it is a common nitrogenous was ...
or ammonium salts or what is termed albuminoid nitrogen or nitrogen still within an organic proteinoid molecule. The differing forms of nitrogen are relatively stable in most river systems with nitrite slowly transforming into nitrate in well oxygenated rivers and ammonia transforming into nitrite/ nitrate. However, the process are slow in cool rivers and reduction in concentration may more often be attributed to simple dilution. All forms of nitrogen are taken up by macrophytes and algae and elevated levels of nitrogen are often associated with overgrowths of plants or
eutrophication Eutrophication is the process by which an entire body of water, or parts of it, becomes progressively enriched with minerals and nutrients, particularly nitrogen and phosphorus. It has also been defined as "nutrient-induced increase in phytopla ...
. These can have the effect of blocking channels and inhibiting
navigation Navigation is a field of study that focuses on the process of monitoring and controlling the movement of a craft or vehicle from one place to another.Bowditch, 2003:799. The field of navigation includes four general categories: land navigation, ...
. However, ecologically, the more significant effect is on dissolved oxygen concentrations which may become super-saturated during daylight due to plant
photosynthesis Photosynthesis is a process used by plants and other organisms to convert light energy into chemical energy that, through cellular respiration, can later be released to fuel the organism's activities. Some of this chemical energy is stored i ...
but then drop to very low levels during darkness as plant respiration uses up the dissolved oxygen. Coupled with the release of oxygen in photosynthesis is the creation of bi-carbonate ions which cause a steep rise in pH and this is matched in darkness as
carbon dioxide Carbon dioxide (chemical formula ) is a chemical compound made up of molecules that each have one carbon atom covalently double bonded to two oxygen atoms. It is found in the gas state at room temperature. In the air, carbon dioxide is transpar ...
is released through respiration which substantially lowers the pH. Thus high levels of nitrogenous compounds tends to lead to eutrophication with extreme variations in parameters which in turn can substantially degrade the ecological worth of the watercourse. Ammonium ions also have a toxic effect, especially on
fish Fish are aquatic, craniate, gill-bearing animals that lack limbs with digits. Included in this definition are the living hagfish, lampreys, and cartilaginous and bony fish as well as various extinct related groups. Approximately 95% of li ...
. The toxicity of ammonia is dependent on both pH and temperature and an added complexity is the buffering effect of the blood/water interface across the
gill A gill () is a respiratory organ that many aquatic organisms use to extract dissolved oxygen from water and to excrete carbon dioxide. The gills of some species, such as hermit crabs, have adapted to allow respiration on land provided they are ...
membrane A membrane is a selective barrier; it allows some things to pass through but stops others. Such things may be molecules, ions, or other small particles. Membranes can be generally classified into synthetic membranes and biological membranes. B ...
which masks any additional toxicity over about pH 8.0. The management of river chemistry to avoid ecological damage is particularly difficult in the case of ammonia as a wide range of potential scenarios of concentration, pH and temperature have to be considered and the diurnal pH fluctuation caused by photosynthesis considered. On warm summer days with high-bi-carbonate concentrations unexpectedly toxic conditions can be created.


Phosphorus

Phosphorus Phosphorus is a chemical element with the symbol P and atomic number 15. Elemental phosphorus exists in two major forms, white phosphorus and red phosphorus, but because it is highly reactive, phosphorus is never found as a free element on Ear ...
compounds are usually found as relatively insoluble phosphates in river water and, except in some exceptional circumstances, their origin is
agriculture Agriculture or farming is the practice of cultivating plants and livestock. Agriculture was the key development in the rise of sedentary human civilization, whereby farming of domesticated species created food surpluses that enabled people to ...
or human sewage. Phosphorus can encourage excessive growths of plants and algae and contribute to
eutrophication Eutrophication is the process by which an entire body of water, or parts of it, becomes progressively enriched with minerals and nutrients, particularly nitrogen and phosphorus. It has also been defined as "nutrient-induced increase in phytopla ...
. If a river discharges into a lake or reservoir phosphate can be mobilised year after year by natural processes. In the summer time, lakes stratify so that warm oxygen rich water floats on top of cold oxygen poor water. In the warm upper layers - the
epilimnion The epilimnion or surface layer is the top-most layer in a thermally stratified lake. It sits above the deeper metalimnion and hypolimnion. It is typically warmer and has a higher pH and higher dissolved oxygen concentration than the hypolimnion ...
- plants consume the available phosphate. As the plants die in the late summer they fall into the cool water layers underneath - the
hypolimnion The hypolimnion or under lake is the dense, bottom layer of water in a thermally- stratified lake. The word hypolimnion is derived from the Greek "limnos" meaning "lake". It is the layer that lies below the thermocline. Typically the hypolimnio ...
- and decompose. During winter turn-over, when a lake becomes fully mixed through the action of winds on a cooling body of water - the phosphates are spread throughout the lake again to feed a new generation of plants. This process is one of the principal causes of persistent
algal bloom An algal bloom or algae bloom is a rapid increase or accumulation in the population of algae in freshwater or marine water systems. It is often recognized by the discoloration in the water from the algae's pigments. The term ''algae'' encompas ...
s at some lakes.


Arsenic

Geological deposits of arsenic may be released into rivers where deep ground-waters are exploited as in parts of
Pakistan Pakistan ( ur, ), officially the Islamic Republic of Pakistan ( ur, , label=none), is a country in South Asia. It is the world's List of countries and dependencies by population, fifth-most populous country, with a population of almost 24 ...
. Many metalloid ores such as lead, gold and
copper Copper is a chemical element with the symbol Cu (from la, cuprum) and atomic number 29. It is a soft, malleable, and ductile metal with very high thermal and electrical conductivity. A freshly exposed surface of pure copper has a pinkis ...
contain traces of arsenic and poorly stored tailings may result in arsenic entering the
hydrological cycle The water cycle, also known as the hydrologic cycle or the hydrological cycle, is a biogeochemical cycle that describes the continuous movement of water on, above and below the surface of the Earth. The mass of water on Earth remains fairly cons ...
.


Solids

Inert solids are produced in all montane rivers as the energy of the water helps grind away rocks into gravel, sand and finer material. Much of this settles very quickly and provides an important substrate for many aquatic organisms. Many
salmon Salmon () is the common name for several list of commercially important fish species, commercially important species of euryhaline ray-finned fish from the family (biology), family Salmonidae, which are native to tributary, tributaries of the ...
id fish require beds of gravel and sand in which to lay their eggs. Many other types of solids from agriculture, mining, quarrying, urban run-off and sewage may block-out sunlight from the river and may block interstices in gravel beds making them useless for spawning and supporting insect life.


Bacterial, viral and parasite inputs

Both agriculture and sewage treatment produce inputs into rivers with very high concentrations of
bacteria Bacteria (; singular: bacterium) are ubiquitous, mostly free-living organisms often consisting of one biological cell. They constitute a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria were among ...
and
virus A virus is a submicroscopic infectious agent that replicates only inside the living cells of an organism. Viruses infect all life forms, from animals and plants to microorganisms, including bacteria and archaea. Since Dmitri Ivanovsky's 1 ...
es including a wide range of
pathogen In biology, a pathogen ( el, πάθος, "suffering", "passion" and , "producer of") in the oldest and broadest sense, is any organism or agent that can produce disease. A pathogen may also be referred to as an infectious agent, or simply a germ ...
ic organisms. Even in areas with little human activity significant levels of bacteria and viruses can be detected originating from fish and aquatic mammals and from animals grazing near rivers such as
deer Deer or true deer are hoofed ruminant mammals forming the family Cervidae. The two main groups of deer are the Cervinae, including the muntjac, the elk (wapiti), the red deer, and the fallow deer; and the Capreolinae, including the reindeer ...
. Upland waters draining areas frequented by
sheep Sheep or domestic sheep (''Ovis aries'') are domesticated, ruminant mammals typically kept as livestock. Although the term ''sheep'' can apply to other species in the genus ''Ovis'', in everyday usage it almost always refers to domesticated s ...
,
goats The goat or domestic goat (''Capra hircus'') is a domesticated species of Caprinae, goat-antelope typically kept as livestock. It was domesticated from the wild goat (''C. aegagrus'') of Southwest Asia and Eastern Europe. The goat is a membe ...
or deer may also harbour a variety of opportunistic human parasites such as
liver fluke Liver fluke is a collective name of a polyphyletic group of parasitic trematodes under the phylum Platyhelminthes. They are principally parasites of the liver of various mammals, including humans. Capable of moving along the blood circulation, t ...
. Consequently, there are very few rivers from which the water is safe to drink without some form of sterilisation or disinfection. In rivers used for contact recreation such as swimming, safe levels of bacteria and viruses can be established based on risk assessment. Under certain conditions bacteria can colonise freshwaters occasionally making large rafts of filamentous mats known as ''sewage fungus'' – usually ''
Sphaerotilus natans ''Sphaerotilus natans'' is an aquatic periphyton organism associated with polluted water. It forms colonies commonly known as "sewage fungus", but later identified as tightly sheathed filamentous bacteria. Morphology Straight or smoothly curve ...
''. The presence of such organisms is almost always an indicator of extreme organic pollution and would be expected to be matched with low dissolved oxygen concentrations and high BOD vales.
E. coli ''Escherichia coli'' (),Wells, J. C. (2000) Longman Pronunciation Dictionary. Harlow ngland Pearson Education Ltd. also known as ''E. coli'' (), is a Gram-negative, facultative anaerobic, rod-shaped, coliform bacterium of the genus ''Escher ...
bacteria have been commonly found in recreational waters and their presence is used to indicate the presence of recent fecal contamination, but E. coli presence may not be indicative of human waste. ''E. coli'' are found in all warm-blooded animals. ''E. coli'' have also been found in fish and turtles.
Enterobacteria Enterobacteriaceae is a large family of Gram-negative bacteria. It was first proposed by Rahn in 1936, and now includes over 30 genera and more than 100 species. Its classification above the level of family is still a subject of debate, but on ...
may also persist in the environment in mud, sediments, sand and soil for considerable lengths of time.


pH

pH in rivers is affected by the geology of the water source, atmospheric inputs and a range of other chemical contaminants. pH is only likely to become an issue on very poorly buffered upland rivers where atmospheric sulphur and
nitrogen oxide Nitrogen oxide may refer to a binary compound of oxygen and nitrogen, or a mixture of such compounds: Charge-neutral *Nitric oxide (NO), nitrogen(II) oxide, or nitrogen monoxide *Nitrogen dioxide (), nitrogen(IV) oxide * Nitrogen trioxide (), or n ...
s may very significantly depress the pH as low as pH4 or in eutrophic alkaline rivers where photosynthetic bi-carbonate ion production in photosynthesis may drive the pH up above pH10.


See also

*
Drinking water quality standards Drinking water quality standards describes the quality parameter#Environmental science, parameters set for drinking water. Despite the truth that every human on this planet needs drinking water to survive and that water may contain many water poll ...
*
Harmonised monitoring scheme The Harmonised monitoring scheme was a long term river water quality monitoring scheme in the United Kingdom. The term is also used to refer to the long term data sets produced by the scheme. Establishment The scheme was established in 1974 by th ...


References

{{DEFAULTSORT:Freshwater Environmental Quality Parameters Environmental chemistry Hydrology