Stuck Unknot
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Stuck Unknot
In mathematics, a stuck unknot is a closed polygonal chain that is topologically equal to the unknot but cannot be deformed to a simple polygon by rigid motions of the segments.G. T. Toussaint, "A new class of stuck unknots in Pol-6," ''Contributions to Algebra and Geometry'', Vol. 42, No. 2, 2001, pp. 301–306. Similarly a stuck open chain is an open polygonal chain such that the segments may not be aligned by moving rigidly its segments. Topologically such a chain can be unknotted, but the limitation of using only rigid motions of the segments can create nontrivial knots in such a chain. Consideration of such "stuck" configurations arises in the study of molecular chains in biochemistry Biochemistry or biological chemistry is the study of chemical processes within and relating to living organisms. A sub-discipline of both chemistry and biology, biochemistry may be divided into three fields: structural biology, enzymology and .... References Knots (knot theory) { ...
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Mathematics
Mathematics is an area of knowledge that includes the topics of numbers, formulas and related structures, shapes and the spaces in which they are contained, and quantities and their changes. These topics are represented in modern mathematics with the major subdisciplines of number theory, algebra, geometry, and analysis, respectively. There is no general consensus among mathematicians about a common definition for their academic discipline. Most mathematical activity involves the discovery of properties of abstract objects and the use of pure reason to prove them. These objects consist of either abstractions from nature orin modern mathematicsentities that are stipulated to have certain properties, called axioms. A ''proof'' consists of a succession of applications of deductive rules to already established results. These results include previously proved theorems, axioms, andin case of abstraction from naturesome basic properties that are considered true starting points of ...
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Polygonal Chain
In geometry, a polygonal chain is a connected series of line segments. More formally, a polygonal chain is a curve specified by a sequence of points (A_1, A_2, \dots, A_n) called its vertices. The curve itself consists of the line segments connecting the consecutive vertices. Name A polygonal chain may also be called a polygonal curve, polygonal path, polyline,. piecewise linear curve, broken line or, in geographic information systems, a linestring or linear ring. Variations A simple polygonal chain is one in which only consecutive (or the first and the last) segments intersect and only at their endpoints. A closed polygonal chain is one in which the first vertex coincides with the last one, or, alternatively, the first and the last vertices are also connected by a line segment. A simple closed polygonal chain in the plane is the boundary of a simple polygon. Often the term "polygon" is used in the meaning of "closed polygonal chain", but in some cases it is important to dr ...
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Unknot
In the mathematical theory of knots, the unknot, not knot, or trivial knot, is the least knotted of all knots. Intuitively, the unknot is a closed loop of rope without a knot tied into it, unknotted. To a knot theorist, an unknot is any embedded topological circle in the 3-sphere that is ambient isotopic (that is, deformable) to a geometrically round circle, the standard unknot. The unknot is the only knot that is the boundary of an embedded disk, which gives the characterization that only unknots have Seifert genus 0. Similarly, the unknot is the identity element with respect to the knot sum operation. Unknotting problem Deciding if a particular knot is the unknot was a major driving force behind knot invariants, since it was thought this approach would possibly give an efficient algorithm to recognize the unknot from some presentation such as a knot diagram. Unknot recognition is known to be in both NP and co-NP. It is known that knot Floer homology and Khova ...
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Simple Polygon
In geometry, a simple polygon is a polygon that does not Intersection (Euclidean geometry), intersect itself and has no holes. That is, it is a flat shape consisting of straight, non-intersecting line segments or "sides" that are joined pairwise to form a single closed curve, closed path. If the sides intersect then the polygon is not simple. The qualifier "simple" is frequently omitted, with the above definition then being understood to define a polygon in general. The definition given above ensures the following properties: * A polygon encloses a region (mathematics), region (called its interior) which always has a measurable area. * The line segments that make up a polygon (called sides or edges) meet only at their endpoints, called vertices (singular: vertex) or less formally "corners". * Exactly two edges meet at each vertex. * The number of edges always equals the number of vertices. Two edges meeting at a corner are usually required to form an angle that is not straight ( ...
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Nontrivial
In mathematics, the adjective trivial is often used to refer to a claim or a case which can be readily obtained from context, or an object which possesses a simple structure (e.g., groups, topological spaces). The noun triviality usually refers to a simple technical aspect of some proof or definition. The origin of the term in mathematical language comes from the medieval trivium curriculum, which distinguishes from the more difficult quadrivium curriculum. The opposite of trivial is nontrivial, which is commonly used to indicate that an example or a solution is not simple, or that a statement or a theorem is not easy to prove. The judgement of whether a situation under consideration is trivial or not depends on who considers it since the situation is obviously true for someone who has sufficient knowledge or experience of it while to someone who has never seen this, it may be even hard to be understood so not trivial at all. And there can be an argument about how quickly and easily ...
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Polymer
A polymer (; Greek '' poly-'', "many" + ''-mer'', "part") is a substance or material consisting of very large molecules called macromolecules, composed of many repeating subunits. Due to their broad spectrum of properties, both synthetic and natural polymers play essential and ubiquitous roles in everyday life. Polymers range from familiar synthetic plastics such as polystyrene to natural biopolymers such as DNA and proteins that are fundamental to biological structure and function. Polymers, both natural and synthetic, are created via polymerization of many small molecules, known as monomers. Their consequently large molecular mass, relative to small molecule compounds, produces unique physical properties including toughness, high elasticity, viscoelasticity, and a tendency to form amorphous and semicrystalline structures rather than crystals. The term "polymer" derives from the Greek word πολύς (''polus'', meaning "many, much") and μέρος (''meros'' ...
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Biochemistry
Biochemistry or biological chemistry is the study of chemical processes within and relating to living organisms. A sub-discipline of both chemistry and biology, biochemistry may be divided into three fields: structural biology, enzymology and metabolism. Over the last decades of the 20th century, biochemistry has become successful at explaining living processes through these three disciplines. Almost all areas of the life sciences are being uncovered and developed through biochemical methodology and research. Voet (2005), p. 3. Biochemistry focuses on understanding the chemical basis which allows biological molecules to give rise to the processes that occur within living cells and between cells,Karp (2009), p. 2. in turn relating greatly to the understanding of tissues and organs, as well as organism structure and function.Miller (2012). p. 62. Biochemistry is closely related to molecular biology, which is the study of the molecular mechanisms of biological phenomena.As ...
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