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RmYN02
RmYN02 is a bat-derived strain of ''Severe acute respiratory syndrome–related coronavirus''. It was discovered in bat droppings collected between May and October 2019 from sites in Mengla County, Yunnan Province, China. It is the second-closest known relative of SARS-CoV-2, the virus strain that causes COVID-19, sharing 93.3% nucleotide identity at the scale of the complete virus genome. RmYN02 contains an insertion at the S1/S2 cleavage site in the spike protein, similar to SARS-CoV-2, suggesting that such insertion events can occur naturally. Genetics It shares 93.3% genome with SARS-CoV-2. RmYN02 was 97.2% identical to SARS-CoV-2 in the 1ab. RmYN02 was 71.8% identical in nucleotide and 97.4% in amino acid to SARS-CoV-2 in the S gene, compared to 97.4% amino acid identity between RaTG13 and SARS-CoV-2. All genetic data were found by Weifeng Shi and his team. Discovery RmYN02 was collected between May and July, 2019, in Yunnan by Professor Alice C. Hughes from Xishuangbanna ...
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Severe Acute Respiratory Syndrome–related Coronavirus
''Severe acute respiratory syndrome–related coronavirus'' (SARSr-CoV or SARS-CoV)The terms ''SARSr-CoV'' and ''SARS-CoV'' are sometimes used interchangeably, especially prior to the discovery of SARS-CoV-2. This may cause confusion when some publications refer to SARS-CoV-1 as ''SARS-CoV''. is a species of virus consisting of many known strains phylogenetically related to severe acute respiratory syndrome coronavirus 1 (SARS-CoV-1) that have been shown to possess the capability to infect humans, bats, and certain other mammals. These enveloped, positive-sense single-stranded RNA viruses enter host cells by binding to the angiotensin-converting enzyme 2 (ACE2) receptor. The SARSr-CoV species is a member of the genus ''Betacoronavirus'' and of the subgenus ''Sarbecovirus'' (SARS Betacoronavirus). Two strains of the virus have caused outbreaks of severe respiratory diseases in humans: severe acute respiratory syndrome coronavirus 1 (SARS-CoV or SARS-CoV-1), which caused the 20 ...
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Mengla County
Mengla County (; Tai Lue: , ''Mueang La''; lo, ເມືອງລ້າ; th, เมืองล้า) is a county under the jurisdiction of the Xishuangbanna Dai Autonomous Prefecture, in far southern Yunnan province, China. ''Meng'' is a variation of ''Mueang''. Name "Mongla", "Mengla" and "Meungla" are different romanizations of the same Tai word. Thus, to differentiate Mengla County in China and Mong La Township in Myanmar, the locals call the former Greater Mengla/Mongla while the latter Lesser Mongla/Mengla. Administrative divisions Mengla County has 8 towns and 2 townships. *8 Towns: Mengla (), Mengpeng (), Mengman (), Menglun (), Mohan (), Mengban (), Guanlei (), and Yiwu () *2 Ethnic Townships: Yi Xiangming () and Yao Yaoqu () Biodiversity Xishuangbanna Tropical Botanical Garden, of the Chinese Academy of Sciences (CAS), is located in Menglun in Mengla County, covering an area of more than 1000 ha. Over 13,000 species of tropical plants are preserved in its 35 li ...
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Yunnan Province
Yunnan , () is a landlocked province in the southwest of the People's Republic of China. The province spans approximately and has a population of 48.3 million (as of 2018). The capital of the province is Kunming. The province borders the Chinese provinces of Guizhou, Sichuan, autonomous regions of Guangxi, and Tibet Autonomous Region, Tibet as well as Southeast Asian countries: Vietnam, Laos, and Myanmar. Yunnan is China's fourth least developed province based on disposable income per capita in 2014. Yunnan is situated in a mountainous area, with high elevations in the northwest and low elevations in the southeast. Most of the population lives in the eastern part of the province. In the west, the altitude can vary from the mountain peaks to river valleys by as much as . Yunnan is rich in natural resources and has the largest diversity of plant life in China. Of the approximately 30,000 species of Vascular plant, higher plants in China, Yunnan has perhaps 17,000 or more. Yun ...
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China
China, officially the People's Republic of China (PRC), is a country in East Asia. It is the world's most populous country, with a population exceeding 1.4 billion, slightly ahead of India. China spans the equivalent of five time zones and borders fourteen countries by land, the most of any country in the world, tied with Russia. Covering an area of approximately , it is the world's third largest country by total land area. The country consists of 22 provinces, five autonomous regions, four municipalities, and two Special Administrative Regions (Hong Kong and Macau). The national capital is Beijing, and the most populous city and financial center is Shanghai. Modern Chinese trace their origins to a cradle of civilization in the fertile basin of the Yellow River in the North China Plain. The semi-legendary Xia dynasty in the 21st century BCE and the well-attested Shang and Zhou dynasties developed a bureaucratic political system to serve hereditary monarchies, or dyna ...
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SARS-CoV-2
Severe acute respiratory syndrome coronavirus 2 (SARS‑CoV‑2) is a strain of coronavirus that causes COVID-19 (coronavirus disease 2019), the respiratory illness responsible for the ongoing COVID-19 pandemic. The virus previously had a provisional name, 2019 novel coronavirus (2019-nCoV), and has also been called the human coronavirus 2019 (HCoV-19 or hCoV-19). First identified in the city of Wuhan, Hubei, China, the World Health Organization declared the outbreak a public health emergency of international concern on January 30, 2020, and a pandemic on March 11, 2020. SARS‑CoV‑2 is a positive-sense single-stranded RNA virus that is contagious in humans. SARS‑CoV‑2 is a virus of the species ''severe acute respiratory syndrome–related coronavirus'' (SARSr-CoV), related to the SARS-CoV-1 virus that caused the 2002–2004 SARS outbreak. Despite its close relation to SARS-CoV-1, its closest known relatives, with which it forms a sister group, are the derived SARS ...
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COVID-19
Coronavirus disease 2019 (COVID-19) is a contagious disease caused by a virus, the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). The first known case was COVID-19 pandemic in Hubei, identified in Wuhan, China, in December 2019. The disease quickly spread worldwide, resulting in the COVID-19 pandemic. The symptoms of COVID‑19 are variable but often include fever, cough, headache, fatigue, breathing difficulties, Anosmia, loss of smell, and Ageusia, loss of taste. Symptoms may begin one to fourteen days incubation period, after exposure to the virus. At least a third of people who are infected Asymptomatic, do not develop noticeable symptoms. Of those who develop symptoms noticeable enough to be classified as patients, most (81%) develop mild to moderate symptoms (up to mild pneumonia), while 14% develop severe symptoms (dyspnea, Hypoxia (medical), hypoxia, or more than 50% lung involvement on imaging), and 5% develop critical symptoms (respiratory failure ...
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Coronavirus Spike Protein
Spike (S) glycoprotein (sometimes also called spike protein, formerly known as E2) is the largest of the four major structural proteins found in coronaviruses. The spike protein assembles into trimers that form large structures, called spikes or peplomers, that project from the surface of the virion. The distinctive appearance of these spikes when visualized using negative stain transmission electron microscopy, "recalling the solar corona", gives the virus family its name. The function of the spike glycoprotein is to mediate viral entry into the host cell by first interacting with molecules on the exterior cell surface and then fusing the viral and cellular membranes. Spike glycoprotein is a class I fusion protein that contains two regions, known as S1 and S2, responsible for these two functions. The S1 region contains the receptor-binding domain that binds to receptors on the cell surface. Coronaviruses use a very diverse range of receptors; SARS-CoV (which causes SARS) an ...
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Xishuangbanna Tropical Botanical Garden
Xishuangbanna Tropical Botanical Garden (XTBG), of the Chinese Academy of Sciences (CAS), founded in 1959, is located in Mengla County, Xishuangbanna at 21º55' N, 101º15'E, covering an area of 1125 ha. Over 13,000 species of tropical plants are preserved in its 35 living collections, including over 301 families and 2110 genera. Organization XTBG is a comprehensive research institution engaged in biodiversity conservation and sustainable uses of plant resources, focusing on forest ecosystem ecology, conservation biology and resource plant development. The institute has three major divisions including two State Key labs (The Keylab for Tropical Forest Ecology (15 research groups), and the Keylab for Tropical Plant resources and Sustainable use(8 groups)), and the Centre for Integrative conservation (9 groups). It also leads CUBG (the Chinese Union of Botanic gardens: which currently includes 88 Botanic gardens across China) in addition to being an active member of IUBG (the ...
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SHC014-CoV
SHC014-CoV is a SARS-like coronavirus (SL-COV) which infects horseshoe bats (family Rhinolophidae). It was discovered in Kunming in Yunnan Province, China. It was discovered along with SL-CoV Rs3367, which was the first bat SARS-like coronavirus shown to directly infect a human cell line. The line of Rs3367 that infected human cells was named Bat SARS-like coronavirus WIV1. Discovery From April 2011 to September 2012, researchers from the Wuhan Institute of Virology collected 117 anal swabs and fecal samples of bats from a Chinese rufous horseshoe bats (''Rhinolophus sinicus'') colony in Kunming City (Yunnan Province in south-western China). 27 out of 117 samples (23%) contained seven different isolates of SARS-like coronaviruses, among which were two previously unknown, called RsSHC014 and Rs3367. Virology In 2013, bat SARS-like coronavirus Rs3367 was shown to be able to directly infect the human HeLa cell line. It was the first time that human cells had been infected with ...
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Bat SARS-like Coronavirus WIV1
Bat SARS-like coronavirus WIV1 (Bat SL-CoV-WIV1), also sometimes called SARS-like coronavirus WIV1, is a strain of '' severe acute respiratory syndrome–related coronavirus'' (SARSr-CoV) isolated from Chinese rufous horseshoe bats in 2013 ('' Rhinolophus sinicus''). Like all coronaviruses, virions consist of single-stranded positive-sense RNA enclosed within an envelope. Zoonosis The discovery confirms that bats are the natural reservoir of SARS-CoV. Phylogenetic analysis shows the possibility of direct transmission of SARS from bats to humans without the intermediary Chinese civets, as previously believed.Vineet D. Menachery ''et al.'', SARS-like WIV1-CoV poised for human emergence, 2016. Phylogenetic See also * Bat as food * Bat coronavirus RaTG13 *Bat virome *SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 (SARS‑CoV‑2) is a strain of coronavirus that causes COVID-19 (coronavirus disease 2019), the respiratory illness responsible for the ongoing ...
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Bat Virome
The bat virome is the group of viruses associated with bats. Bats host a diverse array of viruses, including all seven types described by the Baltimore classification system: (I) double-stranded DNA viruses; (II) single-stranded DNA viruses; (III) double-stranded RNA viruses; (IV) positive-sense single-stranded RNA viruses; (V) negative-sense single-stranded RNA viruses; (VI) positive-sense single-stranded RNA viruses that replicate through a DNA intermediate; and (VII) double-stranded DNA viruses that replicate through a single-stranded RNA intermediate. The greatest share of bat-associated viruses identified as of 2020 are of type IV, in the family ''Coronaviridae''. Bats harbor several viruses that are zoonotic, or capable of infecting humans, and some bat-borne viruses are considered important emerging viruses. These zoonotic viruses include the rabies virus, SARS-CoV, MERS-CoV, Marburg virus, Nipah virus, and Hendra virus. While research clearly indicates that SARS-Co ...
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Coronaviridae
''Coronaviridae'' is a family of enveloped, positive-strand RNA viruses which infect amphibians, birds, and mammals. The group includes the subfamilies ''Letovirinae'' and ''Orthocoronavirinae;'' the members of the latter are known as coronaviruses. The viral genome is 26–32 kilobases in length. The particles are typically decorated with large (~20 nm), club- or petal-shaped surface projections (the "peplomers" or "spikes"), which in electron micrographs of spherical particles create an image reminiscent of the solar corona. Virology The 5' and 3' ends of the genome have a cap and poly(A) tract, respectively. The viral envelope, obtained by budding through membranes of the endoplasmic reticulum (ER) or Golgi apparatus, invariably contains two virus-specified glycoprotein species, known as the spike (S) and membrane (M) proteins. The spike protein makes up the large surface projections (sometimes known as peplomers), while the membrane protein is a triple-spanning t ...
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