Platypuvirus
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Platypuvirus
''Donkey orchid symptomless virus'' (DOSV) was first discovered in Perth, Australia which is located on the Western side of Australia. The Southwest Australian Floristic Region is very biodiverse and secluded with deserts on the east and northeast side along with the ocean on the south side. It is home to approximately 8,000 indigenous plant species that are accustomed to living in a Mediterranean climate. This type of climate means that the plants have adapted to living in unfertile soil, dryness, and can withstand frequent fires in the area. Out of 394 terrestrial orchid species, 76 of these species are threatened. Reasons contributing to plants being threatened in this area could be due to the rate at which they reproduce fruit, pollinate, or human contact. Experimental data Throughout the years 2011-2013, three researchers conducted a study on common donkey orchids. The article that was published in 2013 is titled, ''Donkey Orchid Symptomless Virus: A Viral ‘Platypus†...
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Perth
Perth is the capital and largest city of the Australian state of Western Australia. It is the fourth most populous city in Australia and Oceania, with a population of 2.1 million (80% of the state) living in Greater Perth in 2020. Perth is part of the South West Land Division of Western Australia, with most of the metropolitan area on the Swan Coastal Plain between the Indian Ocean and the Darling Scarp. The city has expanded outward from the original British settlements on the Swan River, upon which the city's central business district and port of Fremantle are situated. Perth is located on the traditional lands of the Whadjuk Noongar people, where Aboriginal Australians have lived for at least 45,000 years. Captain James Stirling founded Perth in 1829 as the administrative centre of the Swan River Colony. It was named after the city of Perth in Scotland, due to the influence of Stirling's patron Sir George Murray, who had connections with the area. It gained city statu ...
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Reverse Transcription Polymerase Chain Reaction
Reverse transcription polymerase chain reaction (RT-PCR) is a laboratory technique combining reverse transcription of RNA into DNA (in this context called complementary DNA or cDNA) and amplification of specific DNA targets using polymerase chain reaction (PCR). It is primarily used to measure the amount of a specific RNA. This is achieved by monitoring the amplification reaction using fluorescence, a technique called real-time PCR or quantitative PCR (qPCR). Combined RT-PCR and qPCR are routinely used for analysis of gene expression and quantification of viral RNA in research and clinical settings. The close association between RT-PCR and qPCR has led to metonymic use of the term qPCR to mean RT-PCR. Such use may be confusing, as RT-PCR can be used without qPCR, for example to enable molecular cloning, sequencing or simple detection of RNA. Conversely, qPCR may be used without RT-PCR, for example to quantify the copy number of a specific piece of DNA. Nomenclature The combine ...
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Base Pair
A base pair (bp) is a fundamental unit of double-stranded nucleic acids consisting of two nucleobases bound to each other by hydrogen bonds. They form the building blocks of the DNA double helix and contribute to the folded structure of both DNA and RNA. Dictated by specific hydrogen bonding patterns, "Watson–Crick" (or "Watson–Crick–Franklin") base pairs (guanine–cytosine and adenine–thymine) allow the DNA helix to maintain a regular helical structure that is subtly dependent on its nucleotide sequence. The Complementarity (molecular biology), complementary nature of this based-paired structure provides a redundant copy of the genetic information encoded within each strand of DNA. The regular structure and data redundancy provided by the DNA double helix make DNA well suited to the storage of genetic information, while base-pairing between DNA and incoming nucleotides provides the mechanism through which DNA polymerase replicates DNA and RNA polymerase transcribes DNA in ...
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Bipartite Genome
Bipartite may refer to: * 2 (number) * Bipartite (theology), a philosophical term describing the human duality of body and soul * Bipartite graph, in mathematics, a graph in which the vertices are partitioned into two sets and every edge has an endpoint in each set * Bipartite uterus, a type of uterus found in deer and moose, etc. * Bipartite treaty, a treaty between two parties See also * Dichotomy A dichotomy is a partition of a whole (or a set) into two parts (subsets). In other words, this couple of parts must be * jointly exhaustive: everything must belong to one part or the other, and * mutually exclusive: nothing can belong simulta ...
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Host (biology)
In biology and medicine, a host is a larger organism that harbours a smaller organism; whether a parasite, parasitic, a mutualism (biology), mutualistic, or a commensalism, commensalist ''guest'' (symbiont). The guest is typically provided with nourishment and shelter. Examples include animals playing host to parasitic worms (e.g. nematodes), cell (biology), cells harbouring pathogenic (disease-causing) viruses, a Fabaceae, bean plant hosting mutualistic (helpful) Rhizobia, nitrogen-fixing bacteria. More specifically in botany, a host plant supplies nutrient, food resources to micropredators, which have an evolutionarily stable strategy, evolutionarily stable relationship with their hosts similar to ectoparasitism. The host range is the collection of hosts that an organism can use as a partner. Symbiosis Symbiosis spans a wide variety of possible relationships between organisms, differing in their permanence and their effects on the two parties. If one of the partners in an ass ...
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Virgaviridae
''Virgaviridae'' is a family of positive-strand RNA viruses. Plants serve as natural hosts.Adams MJ, Antoniw JF, Kreuze J (2009) Virgaviridae: a new family of rod-shaped plant viruses. Arch Virol 154(12):1967–1972 The name of the family is derived from the Latin word ''virga'' (rod), as all viruses in this family are rod-shaped. There are currently 59 species in this family, divided among seven genera. Structure Viruses in Virgaviridae are non-enveloped, with rigid helical rod geometries, and helical symmetry. The diameter is around 20-25 nm, and virions have a central "canal." Genomes are linear, single-stranded, positive sense RNA with a 3'-tRNA like structure and no polyA tail. They may be in one, two, or three segments, depending on the genus. Coat proteins are about 19–24 kiloDaltons. Life cycle Viral replication is cytoplasmic. Entry into the host cell is achieved by penetration into the host cell. Replication follows the positive stranded RNA virus replication ...
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Furovirus
''Furovirus'' is a genus of viruses, in the family ''Virgaviridae''. Graminae, winter wheat, wheat, triticale, oat, sorghum bicolor ''Sorghum bicolor'', commonly called sorghum () and also known as great millet, broomcorn, guinea corn, durra, imphee, jowar, or milo, is a Poaceae, grass species cultivated for its grain, which is used for food for humans, animal feed, and ethan ..., and plants serve as natural hosts. There are six species in this genus. Diseases associated with this genus include: (SBWMV): green and yellow mosaic. Taxonomy The following six species are assigned to the genus: * '' Chinese wheat mosaic virus'' * '' Japanese soil-borne wheat mosaic virus'' * '' Oat golden stripe virus'' * '' Soil-borne cereal mosaic virus'' * '' Soil-borne wheat mosaic virus'' * '' Sorghum chlorotic spot virus'' Structure Viruses in the genus ''Furovirus'' are non-enveloped, with rod-shaped geometries, and helical symmetry. The diameter is around 20 nm, with a length of 260-3 ...
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Movement Protein
In order for a virus to infect a plant, it must be able to move between cells so it can spread throughout the plant. Plant cell walls make this moving/spreading quite difficult and therefore, for this to occur, movement proteins must be present. A movement protein (MP) is a specific virus-encoded protein that is considered to be a general feature of plant genomes. They allow for local and systemic viral spread throughout a plant. MPs were first studied in the Tobacco Mosaic Virus (TMV) where it was found that viruses were unable to spread without the presence of a specific protein. In general, the plant viruses first, move within the cell from replication sites to the plasmodesmata (PD). Then, the virus is able to go through the PD and spread to other cells. This process is controlled through MPs. Different MPs use different mechanisms and pathways to regulate this spread of some viruses. Nearly all plants express at least one MP, while some can encode many different MPs which help ...
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Icosahedron
In geometry, an icosahedron ( or ) is a polyhedron with 20 faces. The name comes and . The plural can be either "icosahedra" () or "icosahedrons". There are infinitely many non- similar shapes of icosahedra, some of them being more symmetrical than others. The best known is the (convex, non- stellated) regular icosahedron—one of the Platonic solids—whose faces are 20 equilateral triangles. Regular icosahedra There are two objects, one convex and one nonconvex, that can both be called regular icosahedra. Each has 30 edges and 20 equilateral triangle faces with five meeting at each of its twelve vertices. Both have icosahedral symmetry. The term "regular icosahedron" generally refers to the convex variety, while the nonconvex form is called a ''great icosahedron''. Convex regular icosahedron The convex regular icosahedron is usually referred to simply as the ''regular icosahedron'', one of the five regular Platonic solids, and is represented by its Schläfli symbol , con ...
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Bacillus (shape)
A bacillus (), also called a bacilliform bacterium or often just a rod (when the context makes the sense clear), is a rod-shaped bacterium or archaeon. Bacilli are found in many different taxonomic groups of bacteria. However, the name ''Bacillus'', capitalized and italicized, refers to a specific genus of bacteria. The name Bacilli, capitalized but not italicized, can also refer to a less specific taxonomic group of bacteria that includes two orders, one of which contains the genus ''Bacillus''. When the word is formatted with lowercase and not italicized, 'bacillus', it will most likely be referring to shape and not to the genus at all. Bacilliform bacteria are also often simply called rods when the bacteriologic context is clear. Bacilli usually divide in the same plane and are solitary, but can combine to form diplobacilli, streptobacilli, and palisades. * Diplobacilli: Two bacilli arranged side by side with each other. * Streptobacilli: Bacilli arranged in chains. * Coccobac ...
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Potexvirus
''Potexvirus'' is a genus of pathogenic viruses in the order ''Tymovirales'', in the family ''Alphaflexiviridae''. Plants serve as natural hosts. There are 48 species in this genus, three of which are assigned to a subgenus. Diseases associated with this genus include: mosaic and ringspot symptoms. The genus name comes from ''POTato virus X''). Taxonomy ''Potexvirus'' contains one subgenus that has three species and 45 additional species unassigned to a subgenus. The following 48 species are assigned to the genus: * Subgenus: '' Mandarivirus'' ** ''Citrus yellow mottle-associated virus'' ** ''Citrus yellow vein clearing virus'' ** '' Indian citrus ringspot virus'' The following species are unassigned to a subgenus: *'' Allium virus X'' *'' Alstroemeria virus X'' *'' Alternanthera mosaic virus'' *'' Ambrosia asymptomatic virus 1'' *'' Asparagus virus 3'' *''Babaco mosaic virus'' *'' Bamboo mosaic virus'' *''Cactus virus X'' *''Cassava Colombian symptomless virus'' *''Cassava c ...
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