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Parachlamydiaceae
Parachlamydiaceae is a family of bacteria in the order Chlamydiales. Species in this family have a ''Chlamydia''–like cycle of replication and their ribosomal RNA genes are 80–90% identical to ribosomal genes in the Chlamydiaceae. The Parachlamydiaceae naturally infect amoebae and can be grown in cultured Vero cells. The Parachlamydiaceae are not recognized by monoclonal antibodies that detect Chlamydiaceae lipopolysaccharide. Phylogeny The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI) Unassigned species: * "''Ca.'' Mesochlamydia elodeae" Corsaro et al. 2012 * "''Ca.'' Metachlamydia lacustris" Corsaro et al. 2010 Isolated Endosymbionts include: *Hall's coccus *P9 *UV-7 *endosymbiont of ''Acanthamoeba'' sp. TUME1 *endosymbiont of ''Acanthamoeba'' sp. UWC22 *endosymbiont of ''Acanthamoeba'' sp. UWE1 Uncultured lineages include: *''Neochlamydia'' turtle t ...
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Chlamydiales
The bacterial order Chlamydiales includes only obligately intracellular bacteria that have a chlamydia-like developmental cycle of replication and at least 80% 16S rRNA or 23S rRNA gene sequence identity with other members of Chlamydiales. Chlamydiales live in animals, insects, and protozoa. Currently, the order Chlamydiales includes the families Chlamydiaceae, Simkaniaceae, and Waddliaceae, which have Gram-negative extracellular infectious bodies (EBs), and Parachlamydiaceae, which has variable Gram staining of EBs. The family Rhabdochlamydiaceae has been proposed. Phylogeny Taxonomy The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI) * Family " Actinochlamydiaceae" Steigen et al. 2013 ** ?"''Ca.'' Actinochlamydia" Steigen et al. 2013 * Family " Clavichlamydiaceae" Horn 2011 ** "''Ca.'' Clavichlamydia" corrig. Karlsen et al. 2008 * Family " Criblamydiaceae" ...
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Parachlamydia Acanthamoebae
''Parachlamydia acanthamoebae'' are bacterium that fall into the category of host-associated microorganisms. This bacterium lives within free-living amoebae that are an intricate part of their reproduction. Originally named ''Candidatus Parachlamydia acanthamoebae'', its current scientific name was introduced shortly after. This species has shown to have over eighty percent 16S rRNA gene sequencing identity with the class Chlamydiia. ''Parachlamydia acanthamoebae'' has the same family as the genus ''Neochlamydia'' with which it shares many similarities. Discovery The isolation of ''Parachlamydia acanthamoebae'' is credited to Rolf Michel and Barbel Hauroder-Philippczyk in Berlin in 1994. Using a nasal swab from volunteers, they were able to isolate coccoid-shaped bacteria that were present among other naturally-produced organisms. Although at least ten subsequent attempts at reisolation were tried, ''P. acanthamoebae'' was not isolated again until 1997 when the researchers Ru ...
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Neochlamydia Hartmannellae
''Neochlamydia hartmannellae'' is a species of bacteria, the type species of its genus. It is a bacterial endocytobionts of '' Hartmannella vermiformis'', hence its name. References Further reading *Whitman, William B., et al., eds. Bergey's manual® of systematic bacteriology. Vol. 5. Springer, 2012. *Schmid, E. N., K-D. Muller, and R. Michel. "Evidence for bacteriophages within Neochlamydia hartmannellae, an obligate endoparasitic bacterium of the free-living amoeba Hartmannella vermiformis." ENDOCYTOBIOSIS AND CELL RESEARCH 14.1/2 (2001): 115–120. External links *LPSN Chlamydiota Bacteria described in 2001 Endoparasites {{bacteria-stub ...
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Chlamydia (bacterium)
''Chlamydia'' is a genus of pathogenic Gram-negative bacteria that are obligate intracellular parasites. ''Chlamydia'' infections are the most common bacterial sexually transmitted diseases in humans and are the leading cause of infectious blindness worldwide. Species include ''Chlamydia trachomatis'' (a human pathogen), '' Ch. suis'' (affects only swine), and '' Ch. muridarum'' (affects only mice and hamsters). Humans mainly contract '' Ch. trachomatis'', '' Ch. pneumoniae'', ''Ch. abortus'', and '' Ch. psittaci''. Classification Because of ''Chlamydia''s unique developmental cycle, it was taxonomically classified in a separate order. ''Chlamydia'' is part of the order Chlamydiales, family Chlamydiaceae. In the early 1990s six species of ''Chlamydia'' were known. A major re-description of the Chlamydiales order in 1999, using the then new techniques of DNA analysis, split three of the species from the genus ''Chlamydia'' and reclassified them in the then newly created genus ...
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Parachlamydia
''Parachlamydia'', is a genus of bacteriae belonging to the Chlamydiota. Species include '' P. acanthamoeba''. See also * List of bacterial orders * List of bacteria genera This article lists the genera of the bacteria. The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI). However many taxonomic names are ... References Chlamydiota Bacteria genera {{bacteria-stub ...
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Nova Scotia
Nova Scotia ( ; ; ) is one of the thirteen provinces and territories of Canada. It is one of the three Maritime provinces and one of the four Atlantic provinces. Nova Scotia is Latin for "New Scotland". Most of the population are native English-speakers, and the province's population is 969,383 according to the 2021 Census. It is the most populous of Canada's Atlantic provinces. It is the country's second-most densely populated province and second-smallest province by area, both after Prince Edward Island. Its area of includes Cape Breton Island and 3,800 other coastal islands. The Nova Scotia peninsula is connected to the rest of North America by the Isthmus of Chignecto, on which the province's land border with New Brunswick is located. The province borders the Bay of Fundy and Gulf of Maine to the west and the Atlantic Ocean to the south and east, and is separated from Prince Edward Island and the island of Newfoundland by the Northumberland and Cabot straits, ...
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Vermont
Vermont () is a state in the northeast New England region of the United States. Vermont is bordered by the states of Massachusetts to the south, New Hampshire to the east, and New York to the west, and the Canadian province of Quebec to the north. Admitted to the union in 1791 as the 14th state, it is the only state in New England not bordered by the Atlantic Ocean. According to the 2020 U.S. census, the state has a population of 643,503, ranking it the second least-populated in the U.S. after Wyoming. It is also the nation's sixth-smallest state in area. The state's capital Montpelier is the least-populous state capital in the U.S., while its most-populous city, Burlington, is the least-populous to be a state's largest. For some 12,000 years, indigenous peoples have inhabited this area. The competitive tribes of the Algonquian-speaking Abenaki and Iroquoian-speaking Mohawk were active in the area at the time of European encounter. During the 17th century, Fr ...
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Germany
Germany,, officially the Federal Republic of Germany, is a country in Central Europe. It is the second most populous country in Europe after Russia, and the most populous member state of the European Union. Germany is situated between the Baltic and North seas to the north, and the Alps to the south; it covers an area of , with a population of almost 84 million within its 16 constituent states. Germany borders Denmark to the north, Poland and the Czech Republic to the east, Austria and Switzerland to the south, and France, Luxembourg, Belgium, and the Netherlands to the west. The nation's capital and most populous city is Berlin and its financial centre is Frankfurt; the largest urban area is the Ruhr. Various Germanic tribes have inhabited the northern parts of modern Germany since classical antiquity. A region named Germania was documented before AD 100. In 962, the Kingdom of Germany formed the bulk of the Holy Roman Empire. During the 16th ce ...
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Acanthamoeba
''Acanthamoeba'' is a genus of amoeboid, amoebae that are commonly recovered from soil, fresh water, and other habitat (ecology), habitats. ''Acanthamoeba'' has two evolutive forms, the metabolically active trophozoite and a dormant, stress-resistant cyst. Trophozoites are small, usually 15 to 25 μm in length and amoeboid in shape. In nature, ''Acanthamoeba'' species are free-living bacterivores, but in certain situations, they can cause infections (acanthamebiasis) in humans and other animals. Distribution ''Acanthamoeba'' spp. are among the most prevalent protozoa found in the environment. They are distributed worldwide, and have been isolated from soil, air, sewage, seawater, chlorinated swimming pools, domestic tap water, bottled water, dental treatment units, hospitals, air-conditioning units, and contact lens cases. Additionally, they have been isolated from human skin, nasal cavities, throats, and intestines, as well as plants and other mammals. Role in disease Diseas ...
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Genome Taxonomy Database
The Genome Taxonomy Database (GTDB) is an online database that maintains information on a proposed nomenclature of prokaryotes, following a phylogenomic approach based on a set of conserved single-copy proteins. In addition to breaking up paraphyletic groups, this method also reassigns taxonomic ranks algorithmically, creating new names in both cases. Information for archaea was added in 2020, along with a species classification based on average nucleotide identity. Each update incorporates new genomes as well as human adjustments to the taxonomy. An open-source tool called GTDB-Tk is available to classify draft genomes into the GTDB hierarchy. The GTDB system, via GTDB-Tk, has been used to catalogue not-yet-named bacteria in the human gut microbiome and other metagenomic sources. The GTDB is incorporated into the ''Bergey's Manual of Systematics of Archaea and Bacteria'' in 2019 as its phylogenomic resource. See also * PhyloCode * National Center for Biotechnology Informa ...
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Trophozoites
A trophozoite (G. ''trope'', nourishment + ''zoon'', animal) is the activated, feeding stage in the life cycle of certain protozoa such as malaria-causing '' Plasmodium falciparum'' and those of the '' Giardia'' group. (The complement of the trophozoite state is the thick-walled cyst form). Life cycle stages Trophozoite and cyst stages are shown in the life cycle of '' Balantidium coli'' the causative agent of balantidiasis. In the apicomplexan life cycle the trophozoite undergoes schizogony (asexual reproduction) and develops into a schizont which contains merozoites Apicomplexans, a group of intracellular parasites, have life cycle stages that allow them to survive the wide variety of environments they are exposed to during their complex life cycle. Each stage in the life cycle of an apicomplexan organism is .... The trophozoite life stage of '' Giardia'' colonizes and proliferates in the small intestine. Trophozoites develop during the course of the infection into cysts wh ...
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Mesophilic
A mesophile is an organism that grows best in moderate temperature, neither too hot nor too cold, with an optimum growth range from . The optimum growth temperature for these organisms is 37°C. The term is mainly applied to microorganisms. Organisms that prefer extreme environments are known as extremophiles. Mesophiles have diverse classifications, belonging to two domains: Bacteria, Archaea, and to kingdom Fungi of domain Eucarya. Mesophiles belonging to the domain Bacteria can either be gram-positive or gram-negative. Oxygen requirements for mesophiles can be aerobic or anaerobic. There are three basic shapes of mesophiles: coccus, bacillus, and spiral. Habitat The habitats of mesophiles can include cheese and yogurt. They are often included during fermentation of beer and wine making. Since normal human body temperature is 37 °C, the majority of human pathogens are mesophiles, as are most of the organisms comprising the human microbiome. Mesophiles vs. extremophiles ...
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