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Enquatrovirus
''Enquatrovirus'' is a genus of bacteriophages in the order ''Caudovirales'', in the family ''Podoviridae''. Bacteria serve as natural hosts. There is currently only one species in this genus: the type species '' Escherichia virus N4''. ''Escherichia virus N4'' is the type species of this genus and was originally isolated from sewers in Genoa, Italy and infects ''Escherichia coli'' K-12. Recently, a number of genetically related phages were isolated, infecting '' Silicibacter'' and '' Sulfitobacter'' (DSS3ɸ2 and EE36ɸ1) as well as a number of ''Pseudomonas'' phages (LUZ7, LIT1 and PEV2) Taxonomy Group: dsDNA Structure The virus's virion have icosahedral (T=9) heads ~70 nm and short tails (10 nm), and contain short fibers originating from the junction between the head and tail. All the phages of this genus are strictly virulent and contain a linear dsDNA genome (with terminal repeats) in the range of 70-75kb. Life cycle Viral replication is cytoplasmic. Entry into th ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Escherichia Virus N4
''Enquatrovirus'' is a genus of bacteriophages in the order '' Caudovirales'', in the family '' Podoviridae''. Bacteria serve as natural hosts. There is currently only one species in this genus: the type species '' Escherichia virus N4''. ''Escherichia virus N4'' is the type species of this genus and was originally isolated from sewers in Genoa, Italy and infects '' Escherichia coli'' K-12. Recently, a number of genetically related phages were isolated, infecting ''Silicibacter'' and '' Sulfitobacter'' (DSS3ɸ2 and EE36ɸ1) as well as a number of '' Pseudomonas'' phages (LUZ7, LIT1 and PEV2) Taxonomy Group: dsDNA Structure The virus's virion have icosahedral (T=9) heads ~70 nm and short tails (10 nm), and contain short fibers originating from the junction between the head and tail. All the phages of this genus are strictly virulent and contain a linear dsDNA genome (with terminal repeats) in the range of 70-75kb. Life cycle Viral replication is cytoplasmic. Entry ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Podoviridae
''Podoviridae'' is a family of bacteriophage in the order ''Caudovirales'' often associated with T-7 like phages. There are 130 species in this family, assigned to 3 subfamilies and 52 genera. This family is characterized by having very short, noncontractile tails. Podoviradae are largely understudied and most new isolates are of the phicbkviruses genus, a group of giant viruses that appear to be Caulobacter specific. Structure Viruses in ''Podoviridae'' are non-enveloped, with icosahedral and head-tail geometries. The diameter is around 60 nm, and consists of 72 capsomers. The head protein has a molecular mass of ~38 kiloDaltons and is present in 460 copies per virion. There are 9 structural proteins. The tail is non-contractile and has 6 short subterminal fibers. It is thick and rod-shaped and built of stacked disks. The maximum length is ~17 nm. The double stranded DNA genome is linear, around 40-42kb in length, and encodes ~55 genes. The guanine + cytosine Cy ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Bacteriophage
A bacteriophage (), also known informally as a ''phage'' (), is a duplodnaviria virus that infects and replicates within bacteria and archaea. The term was derived from "bacteria" and the Greek φαγεῖν ('), meaning "to devour". Bacteriophages are composed of proteins that encapsulate a DNA or RNA genome, and may have structures that are either simple or elaborate. Their genomes may encode as few as four genes (e.g. MS2) and as many as hundreds of genes. Phages replicate within the bacterium following the injection of their genome into its cytoplasm. Bacteriophages are among the most common and diverse entities in the biosphere. Bacteriophages are ubiquitous viruses, found wherever bacteria exist. It is estimated there are more than 1031 bacteriophages on the planet, more than every other organism on Earth, including bacteria, combined. Viruses are the most abundant biological entity in the water column of the world's oceans, and the second largest component of biom ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Virion
A virus is a submicroscopic infectious agent that replicates only inside the living cells of an organism. Viruses infect all life forms, from animals and plants to microorganisms, including bacteria and archaea. Since Dmitri Ivanovsky's 1892 article describing a non-bacterial pathogen infecting tobacco plants and the discovery of the tobacco mosaic virus by Martinus Beijerinck in 1898,Dimmock p. 4 more than 9,000 virus species have been described in detail of the millions of types of viruses in the environment. Viruses are found in almost every ecosystem on Earth and are the most numerous type of biological entity. The study of viruses is known as virology, a subspeciality of microbiology. When infected, a host cell is often forced to rapidly produce thousands of copies of the original virus. When not inside an infected cell or in the process of infecting a cell, viruses exist in the form of independent particles, or ''virions'', consisting of (i) the genetic material, i.e ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Polymerase
A polymerase is an enzyme ( EC 2.7.7.6/7/19/48/49) that synthesizes long chains of polymers or nucleic acids. DNA polymerase and RNA polymerase are used to assemble DNA and RNA molecules, respectively, by copying a DNA template strand using base-pairing interactions or RNA by half ladder replication. A DNA polymerase from the thermophilic bacterium, ''Thermus aquaticus'' (''Taq'') ( PDBbr>1BGX EC 2.7.7.7) is used in the polymerase chain reaction, an important technique of molecular biology. A polymerase may be template dependent or template independent. Poly-A-polymerase is an example of template independent polymerase. Terminal deoxynucleotidyl transferase also known to have template independent and template dependent activities. Types By function *DNA polymerase (DNA-directed DNA polymerase, DdDP) **Family A: DNA polymerase I; Pol γ, θ, ν **Family B: DNA polymerase II; Pol α, δ, ε, ζ **Family C: DNA polymerase III holoenzyme **Family X: Pol β, λ, μ * ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Clade
A clade (), also known as a monophyletic group or natural group, is a group of organisms that are monophyletic – that is, composed of a common ancestor and all its lineal descendants – on a phylogenetic tree. Rather than the English term, the equivalent Latin term ''cladus'' (plural ''cladi'') is often used in taxonomical literature. The common ancestor may be an individual, a population, or a species (extinct or extant). Clades are nested, one in another, as each branch in turn splits into smaller branches. These splits reflect evolutionary history as populations diverged and evolved independently. Clades are termed monophyletic (Greek: "one clan") groups. Over the last few decades, the cladistic approach has revolutionized biological classification and revealed surprising evolutionary relationships among organisms. Increasingly, taxonomists try to avoid naming taxa that are not clades; that is, taxa that are not monophyletic. Some of the relationships between organisms ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Genome
In the fields of molecular biology and genetics, a genome is all the genetic information of an organism. It consists of nucleotide sequences of DNA (or RNA in RNA viruses). The nuclear genome includes protein-coding genes and non-coding genes, other functional regions of the genome such as regulatory sequences (see non-coding DNA), and often a substantial fraction of 'junk' DNA with no evident function. Almost all eukaryotes have mitochondria and a small mitochondrial genome. Algae and plants also contain chloroplasts with a chloroplast genome. The study of the genome is called genomics. The genomes of many organisms have been sequenced and various regions have been annotated. The International Human Genome Project reported the sequence of the genome for ''Homo sapiens'' in 200The Human Genome Project although the initial "finished" sequence was missing 8% of the genome consisting mostly of repetitive sequences. With advancements in technology that could handle sequenci ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Nanometre
330px, Different lengths as in respect to the molecular scale. The nanometre (international spelling as used by the International Bureau of Weights and Measures; SI symbol: nm) or nanometer (American and British English spelling differences#-re, -er, American spelling) is a units of measurement, unit of length in the International System of Units (SI), equal to one billionth (short scale) of a metre () and to 1000 picometres. One nanometre can be expressed in scientific notation as , and as metres. History The nanometre was formerly known as the millimicrometre – or, more commonly, the millimicron for short – since it is of a micron (micrometre), and was often denoted by the symbol mμ or (more rarely and confusingly, since it logically should refer to a ''millionth'' of a micron) as μμ. Etymology The name combines the SI prefix ''nano-'' (from the Ancient Greek , ', "dwarf") with the parent unit name ''metre'' (from Greek , ', "unit of measurement"). ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Icosahedron
In geometry, an icosahedron ( or ) is a polyhedron with 20 faces. The name comes and . The plural can be either "icosahedra" () or "icosahedrons". There are infinitely many non- similar shapes of icosahedra, some of them being more symmetrical than others. The best known is the (convex, non- stellated) regular icosahedron—one of the Platonic solids—whose faces are 20 equilateral triangles. Regular icosahedra There are two objects, one convex and one nonconvex, that can both be called regular icosahedra. Each has 30 edges and 20 equilateral triangle faces with five meeting at each of its twelve vertices. Both have icosahedral symmetry. The term "regular icosahedron" generally refers to the convex variety, while the nonconvex form is called a ''great icosahedron''. Convex regular icosahedron The convex regular icosahedron is usually referred to simply as the ''regular icosahedron'', one of the five regular Platonic solids, and is represented by its Schläfli symbol , con ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Sulfitobacter
In taxonomy, ''Sulfitobacter'' is a genus of the Rhodobacteraceae The Rhodobacteraceae are a family of Pseudomonadota in the order Rhodobacterales within the alpha subgroup.See the NCBIbr>webpage on Rhodobacteraceae Data extracted from the Like all Pseudomonadota, they are gram-negative. It contains chemo .... Species ''Sulfitobacter'' comprises the following species: * '' Sulfitobacter aestuarii'' Park ''et al''. 2018 * "''Sulfitobacter algicola''" Wang ''et al''. 2021 * '' Sulfitobacter brevis'' Labrenz ''et al''. 2000 * '' Sulfitobacter delicatus'' Ivanova ''et al''. 2004 * '' Sulfitobacter donghicola'' Yoon ''et al''. 2007 * '' Sulfitobacter dubius'' Ivanova ''et al''. 2004 * '' Sulfitobacter faviae'' Kumari ''et al''. 2016 * '' Sulfitobacter geojensis'' Kwak ''et al''. 2014 * '' Sulfitobacter guttiformis'' (Labrenz ''et al''. 2000) Yoon ''et al''. 2007 * '' Sulfitobacter indolifex'' (Wagner-Döbler ''et al''. 2004) Liu ''et al''. 2017 * '' Sulfitobacter litoralis'' ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Pseudomonas
''Pseudomonas'' is a genus of Gram-negative, Gammaproteobacteria, belonging to the family Pseudomonadaceae and containing 191 described species. The members of the genus demonstrate a great deal of metabolic diversity and consequently are able to colonize a wide range of niches. Their ease of culture ''in vitro'' and availability of an increasing number of ''Pseudomonas'' strain genome sequences has made the genus an excellent focus for scientific research; the best studied species include ''P. aeruginosa'' in its role as an opportunistic human pathogen, the plant pathogen '' P. syringae'', the soil bacterium '' P. putida'', and the plant growth-promoting ''P. fluorescens, P. lini, P. migulae'', and ''P. graminis''. Because of their widespread occurrence in water and plant seeds such as dicots, the pseudomonads were observed early in the history of microbiology. The generic name ''Pseudomonas'' created for these organisms was defined in rather vague terms by Walter Migula i ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Caudovirales
''Caudovirales'' is an order of viruses known as the tailed bacteriophages (''cauda'' is Latin for "tail"). Under the Baltimore classification scheme, the ''Caudovirales'' are group I viruses as they have double stranded DNA (dsDNA) genomes, which can be anywhere from 18,000 base pairs to 500,000 base pairs in length. The virus particles have a distinct shape; each virion has an icosahedral head that contains the viral genome, and is attached to a flexible tail by a connector protein. The order encompasses a wide range of viruses, many containing genes of similar nucleotide sequence and function. However, some tailed bacteriophage genomes can vary quite significantly in nucleotide sequence, even among the same genus. Due to their characteristic structure and possession of potentially homologous genes, it is believed these bacteriophages possess a common origin. There are 14 families, 73 subfamilies, 927 genera, and 2,814 species in the order. This makes ''Caudovirales'' the ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
