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Extremophiles
An extremophile (from Latin ' meaning "extreme" and Greek ' () meaning "love") is an organism that is able to live (or in some cases thrive) in extreme environments, i.e. environments that make survival challenging such as due to extreme temperature, radiation, salinity, or pH level. These organisms are ecologically dominant in the evolutionary history of the planet. Some spores and cocooned bacteria samples have been dormant for more than 40 million years, extremophiles have continued to thrive in the most extreme conditions, making them one of the most abundant lifeforms. Characteristics In the 1980s and 1990s, biologists found that microbial life has great flexibility for surviving in extreme environments—niches that are acidic, extraordinarily hot or within irregular air pressure for example—that would be completely inhospitable to complex organisms. Some scientists even concluded that life may have begun on Earth in hydrothermal vents far under the ocean's surfa ...
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Microbial Life
A microorganism, or microbe,, ''mikros'', "small") and ''organism'' from the el, ὀργανισμός, ''organismós'', "organism"). It is usually written as a single word but is sometimes hyphenated (''micro-organism''), especially in older texts. The informal synonym ''microbe'' () comes from μικρός, mikrós, "small" and βίος, bíos, "life". is an organism of microscopic scale, microscopic size, which may exist in its unicellular organism, single-celled form or as a Colony (biology)#Microbial colonies, colony of cells. The possible existence of unseen microbial life was suspected from ancient times, such as in Jain scriptures from sixth century BC India. The scientific study of microorganisms began with their observation under the microscope in the 1670s by Anton van Leeuwenhoek. In the 1850s, Louis Pasteur found that microorganisms caused food spoilage, debunking the theory of spontaneous generation. In the 1880s, Robert Koch discovered that microorganisms cause ...
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Pyrolobus Fumarii
''Pyrolobus fumarii'' (literally the "firelobe of the chimney") is a species of archaea known for its ability to live at extremely high temperatures that kill most organisms.Joseph E. Armstrong. 2014. How the Earth Turned Green: A Brief 3.8-Billion-Year History of Plants. University of Chicago Press. It was first discovered in 1997 in a black smoker hydrothermal vent at the Mid-Atlantic Ridge, setting the upper temperature threshold for known life to exist at 113 °C (235.4 °F), but more recently ''Methanopyrus kandleri'' has been discovered which can survive temperatures up to 122 °C. (251.6 °F)   The species "freezes" or solidifies and ceases growth at temperatures of 90 °C (194 °F) and below. Strain 121, a microbe from the same family found at a vent in the Pacific Ocean, survived and multiplied during a 10-hour interval spent at 121 °C (249.8 °F) in an autoclave An autoclave is a machine used to carry out industrial and sc ...
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Antarctica
Antarctica () is Earth's southernmost and least-populated continent. Situated almost entirely south of the Antarctic Circle and surrounded by the Southern Ocean, it contains the geographic South Pole. Antarctica is the fifth-largest continent, being about 40% larger than Europe, and has an area of . Most of Antarctica is covered by the Antarctic ice sheet, with an average thickness of . Antarctica is, on average, the coldest, driest, and windiest of the continents, and it has the highest average elevation. It is mainly a polar desert, with annual precipitation of over along the coast and far less inland. About 70% of the world's freshwater reserves are frozen in Antarctica, which, if melted, would raise global sea levels by almost . Antarctica holds the record for the lowest measured temperature on Earth, . The coastal regions can reach temperatures over in summer. Native species of animals include mites, nematodes, penguins, seals and tardigrades. Where vegetation o ...
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Pyrococcus Furiosus
''Pyrococcus furiosus'' is a heterotrophic, strictly anaerobic, extremophilic, model species of archaea. It is classified as a hyperthermophile because it thrives best under extremely high temperatures, and is notable for having an optimum growth temperature of 100 °C (a temperature that would destroy most living organisms). ''P. furiosus'' belongs to the '' Pyrococcus'' genus, most commonly found in extreme environmental conditions of hydrothermal vents. It is one of the few prokaryotic organisms that has enzymes containing tungsten, an element rarely found in biological molecules. ''Pyrococcus furiosus'' has many potential industrial applications, owing to its unique thermostable properties. ''P. furiosus'' is used in the process of DNA amplification by way of polymerase chain reaction (PCR) because of its proofreading activity. Utilizing ''P. furiosus'' in PCR DNA amplification instead of the traditionally used ''Taq'' DNA polymerase allows for a significantly more accura ...
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Soda Lake
A soda lake or alkaline lake is a lake on the strongly alkaline side of neutrality, typically with a pH value between 9 and 12. They are characterized by high concentrations of carbonate salts, typically sodium carbonate (and related salt complexes), giving rise to their alkalinity. In addition, many soda lakes also contain high concentrations of sodium chloride and other dissolved salts, making them saline or hypersaline lakes as well. High pH and salinity often coincide, because of how soda lakes develop. The resulting hypersaline and highly alkalic soda lakes are considered some of the most extreme aquatic environments on Earth.Grant, W. D. (2006). ''Alkaline environments and biodiversity.'' in ''Extremophiles'', 2006, UNESCO / Eolss Publishers, Oxford, UK In spite of their apparent inhospitability, soda lakes are often highly productive ecosystems, compared to their (pH-neutral) freshwater counterparts. Gross primary production (photosynthesis) rates above (grams of carbon p ...
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Extreme Environments
An extreme environment is a habitat that is considered very hard to survive in due to its considerably extreme conditions such as temperature, accessibility to different energy sources or under high pressure. For an area to be considered an extreme environment, it must contain certain conditions and aspects that are considered very hard for other life forms to survive. Pressure conditions may be extremely high or low; high or low content of oxygen or carbon dioxide in the atmosphere; high levels of radiation, acidity, or alkalinity; absence of water; water containing a high concentration of salt; the presence of sulphur, petroleum, and other toxic substances. Examples of extreme environments include the geographical poles, very arid deserts, volcanoes, deep ocean trenches, upper atmosphere, outer space, and the environments of every planet in the Solar System except the Earth. Any organisms living in these conditions are often very well adapted to their living circumstances, which ...
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International Ocean Discovery Program
The International Ocean Discovery Program (IODP) is an international marine research collaboration dedicated to advancing scientific understanding of the Earth through drilling, coring, and monitoring the subseafloor. The research enabled by IODP samples and data improves scientific understanding of changing climate and ocean conditions, the origins of ancient life, risks posed by geohazards, and the structure and processes of Earth's tectonic plates and uppermost mantle. IODP began in 2013 and builds on the research of four previous scientific ocean drilling programs: Project Mohole, Deep Sea Drilling Project, Ocean Drilling Program, and Integrated Ocean Drilling Program. Together, these programs represent the longest running and most successful international Earth science collaboration. Scientific scope The scientific scope of IODP is laid out in the program's science plan, ''Illuminating Earth's Past, Present, and Future''. The science plan covers a 10-year period of operati ...
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Nankai Trough
The is a submarine trough located south of the Nankaidō region of Japan's island of Honshu, extending approximately offshore. The underlying fault, the ''Nankai megathrust,'' is the source of the devastating Nankai megathrust earthquakes, while the trough itself is potentially a major source of hydrocarbon fuel, in the form of methane clathrate. In plate tectonics, the Nankai Trough marks a subduction zone that is caused by subduction of the Philippine Sea Plate beneath Japan, part of the Eurasian plate (Kanda et al., 2004). This plate boundary would be an oceanic trench except for a high flux of sediments that fills the trench. Within the Nankai Trough there is a large amount of deformed trench sediments (Ike, 2004), making one of Earth's best examples of accretionary prism. Furthermore, seismic reflection studies have revealed the presence of basement highs that are interpreted as seamounts that are covered in sediments (Ike, 2004). The northern part of the trough is known ...
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Subduction
Subduction is a geological process in which the oceanic lithosphere is recycled into the Earth's mantle at convergent boundaries. Where the oceanic lithosphere of a tectonic plate converges with the less dense lithosphere of a second plate, the heavier plate dives beneath the second plate and sinks into the mantle. A region where this process occurs is known as a subduction zone, and its surface expression is known as an arc-trench complex. The process of subduction has created most of the Earth's continental crust. Rates of subduction are typically measured in centimeters per year, with the average rate of convergence being approximately two to eight centimeters per year along most plate boundaries. Subduction is possible because the cold oceanic lithosphere is slightly denser than the underlying asthenosphere, the hot, ductile layer in the upper mantle underlying the cold, rigid lithosphere. Once initiated, stable subduction is driven mostly by the negative buoyancy of the de ...
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Amino Acid
Amino acids are organic compounds that contain both amino and carboxylic acid functional groups. Although hundreds of amino acids exist in nature, by far the most important are the alpha-amino acids, which comprise proteins. Only 22 alpha amino acids appear in the genetic code. Amino acids can be classified according to the locations of the core structural functional groups, as Alpha and beta carbon, alpha- , beta- , gamma- or delta- amino acids; other categories relate to Chemical polarity, polarity, ionization, and side chain group type (aliphatic, Open-chain compound, acyclic, aromatic, containing hydroxyl or sulfur, etc.). In the form of proteins, amino acid '' residues'' form the second-largest component (water being the largest) of human muscles and other tissues. Beyond their role as residues in proteins, amino acids participate in a number of processes such as neurotransmitter transport and biosynthesis. It is thought that they played a key role in enabling life ...
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Hydrothermal Vent
A hydrothermal vent is a fissure on the seabed from which geothermally heated water discharges. They are commonly found near volcanically active places, areas where tectonic plates are moving apart at mid-ocean ridges, ocean basins, and hotspots. Hydrothermal deposits are rocks and mineral ore deposits formed by the action of hydrothermal vents. Hydrothermal vents exist because the earth is both geologically active and has large amounts of water on its surface and within its crust. Under the sea, they may form features called black smokers or white smokers. Relative to the majority of the deep sea, the areas around hydrothermal vents are biologically more productive, often hosting complex communities fueled by the chemicals dissolved in the vent fluids. Chemosynthetic bacteria and Archaea form the base of the food chain, supporting diverse organisms, including giant tube worms, clams, limpets and shrimp. Active hydrothermal vents are thought to exist on Jupiter's moon Europa an ...
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Protein Folding
Protein folding is the physical process by which a protein chain is translated to its native three-dimensional structure, typically a "folded" conformation by which the protein becomes biologically functional. Via an expeditious and reproducible process, a polypeptide folds into its characteristic three-dimensional structure from a random coil. Each protein exists first as an unfolded polypeptide or random coil after being translated from a sequence of mRNA to a linear chain of amino acids. At this stage the polypeptide lacks any stable (long-lasting) three-dimensional structure (the left hand side of the first figure). As the polypeptide chain is being synthesized by a ribosome, the linear chain begins to fold into its three-dimensional structure. Folding of many proteins begins even during translation of the polypeptide chain. Amino acids interact with each other to produce a well-defined three-dimensional structure, the folded protein (the right hand side of the figure), ...
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