Holomycota
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Holomycota
Holomycota or Nucletmycea are a basal Opisthokont clade as sister of the Holozoa. It consists of the Cristidiscoidea and the kingdom Fungi. The position of nucleariids, unicellular free-living phagotrophic amoebae, as the earliest lineage of Holomycota suggests that animals and fungi independently acquired complex multicellularity from a common unicellular ancestor and that the osmotrophic lifestyle (one of the fungal hallmarks) was originated later in the divergence of this eukaryotic lineage. Opisthosporidians is a recently proposed taxonomic group that includes aphelids, Microsporidia and Cryptomycota, three groups of endoparasites. ''Rozella'' ( Cryptomycota) is the earliest diverging fungal genus in which chitin has been observed at least in some stages of their life cycle, although the chitinous cell wall (another fungal hallmark) and osmotrophy originated in a common ancestor of Blastocladiomycota and Chytridiomycota, which still contain some ancestral characteristics suc ...
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Opisthokont
The opisthokonts () are a broad group of eukaryotes, including both the animal and fungus kingdoms. The opisthokonts, previously called the "Fungi/Metazoa group", are generally recognized as a clade. Opisthokonts together with Apusomonadida and Breviata comprise the larger clade Obazoa. Flagella and other characteristics A common characteristic of opisthokonts is that flagellate cells, such as the sperm of most animals and the spores of the chytrid fungi, propel themselves with a single ''posterior'' flagellum. It is this feature that gives the group its name. In contrast, flagellate cells in other eukaryote groups propel themselves with one or more ''anterior'' flagella. However, in some opisthokont groups, including most of the fungi, flagellate cells have been lost. Opisthokont characteristics include synthesis of extracellular chitin in exoskeleton, cyst/spore wall, or cell wall of filamentous growth and hyphae; the extracellular digestion of substrates with osmotrophic a ...
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Opisthosporidia
Opisthosporidia is a superphylum of intracellular parasites with amoeboid vegetative stage, defined as a common group of eukaryotic groups Microsporidia, Cryptomycota (also known as Rozellida, Rozellomycota, or Rozellosporidia) and Aphelidea. They have been considered to represent a monophyletic lineage with shared ecological and structural features, being a sister clade of the Fungi. Together with the Fungi they represent a sister clade of the Cristidiscoidea, together forming the Holomycota. Several other basal groups of the freshwater, marine and soil-inhabiting Holomycota were identified in recent studies, as the 'basal clone group 1' (BCG1=NCLC1), 'basal clone group 2' (BCG2), 'basal marine group' (NAMAKO-37), 'basal group GS01', the inner relationships of Opisthosporidia were clarified and their monophyly questioned: Cryptomycota and Microsporidia were proposed to join the phylum Rozellomycota, while Aphelidea were considered as a separate, though related phylum and all t ...
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Cristidiscoidea
Cristidiscoidea or Nucleariae is a proposed basal holomycota clade in which Fonticula and Nucleariida emerged, as sister of the fungi. Since it is close to the divergence between the main lineages of fungi and animals, the study of Cristidiscoidea can provide crucial information on the divergent lifestyles of these groups and the evolution of opisthokonts and slime mold multicellularity. The holomycota tree is following Tedersoo et al. Classification * Class Cristidiscoidea Cavalier-Smith 1998 ** Order Fonticulida Cavalier-Smith 1993 *** Family Fonticulidae Worley, Raper & Hohl 1979 **** Genus ''Fonticula'' Worley, Raper & Hohl 1979 **** Genus '' Parvularia'' López-Escardó 2017 ***** Species '' P. atlantis'' López-Escardó 2017 ** Order Nucleariida Cavalier-Smith 1993 *** Family Nucleariidae Cann & Page 1979 **** Genus ''Nuclearia ''Nuclearia'' is a nucleariid Nucleariida is a group of amoebae with filose pseudopods, known mostly from soils and freshwater. They ar ...
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Fonticulida
''Fonticula'' is a genus of cellular slime mold which forms a fruiting body in a volcano shape. As long ago as 1979 it has been known to not have a close relationship with either the Dictyosteliida or the Acrasidae, the two well-established groups of cellular slime molds. In 1979, ''Fonticula'' was made a new genus of its own due to the unique characteristics of its fruiting body, with only one species: ''Fonticula alba''. The life cycle of ''Fonticula alba'' alternates between an amoeboid vegetative stage and aggregative fruiting stage. The fruiting body of the genus has a unique shape, as its sorocarp resembles a volcano and sorus looks like a ball of hot lava emerging from that volcano. Molecular phylogenies have found alignments in genes of ''Fonticula alba'' to subgroups in Opisthokonta. A 2009 study has found that ''Fonticula'' is the sister taxa to ''Nuclearia'', thus making it related to the kingdom Fungi. ''Fonticula'', ''Nuclearia'', and Fungi have been united into th ...
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Rozellida
Cryptomycota ('hidden fungi'), Rozellida, or Rozellomycota are a clade of micro-organisms that are either fungi or a sister group to fungi. They differ from classical fungi in that they lack chitinous cell walls at any trophic stage in their lifecycle, as reported by Jones and colleagues in 2011. Despite their unconventional feeding habits, chitin has been observed in the inner layer of resting spores, and in immature resting spores for some species of ''Rozella'', as indicated with calcofluor-white stain as well as the presence of a fungal-specific chitin synthase gene. Rozellida were first detected as DNA sequences retrieved from a freshwater laboratory enclosure. Phylogenetic analysis of these sequences formed a unique terminal clade of then unknown affiliation provisionally called after the first clone in the clade: LKM11. The only formally described genus in the clade is ''Rozella'', which was previously considered a chytrid. The existence of related organisms was known fr ...
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Nuclearia
''Nuclearia'' is a nucleariid Nucleariida is a group of amoebae with filose pseudopods, known mostly from soils and freshwater. They are distinguished from the superficially similar vampyrellids mainly by having mitochondria with discoid cristae, in the absence of superfi ... genus. Species include: * Species ?'' Astrodisculus affinis'' Schouteden 1905 * Species ?'' Astrodisculus araneiformis'' Schewiakoff 1893 * Species ?'' Astrodisculus laciniatus'' Penard 1904 'Chlamydaster lacinatus'' (Penard 1904) Rainer 1968* Species ?'' Astrodisculus marinus'' Kufferath 1952 * Species ?'' Astrodisculus minutus'' Greeff 1869 * Species ?'' Heliophrys variabilis'' * Species ?'' Nuclearina similis'' * Species ?'' N. amphizonellae'' Penard 1917 * Species ?'' N. conspicua'' West 1903 * Species ?'' N. delicatula'' Cienkowsky 1865 * Species ?'' N. lohmanni'' Kufferath 1952 * Species ?'' N. pseudotenelloides'' * Species '' N. flavescens'' (Greef 1869) Patterson 1984 'Astrodisculus flavescen ...
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Dikarya
Dikarya is a subkingdom of Fungi that includes the divisions Ascomycota and Basidiomycota, both of which in general produce dikaryons, may be filamentous or unicellular, but are always without flagella. The Dikarya are most of the so-called "higher fungi", but also include many anamorphic species that would have been classified as molds in historical literature. Phylogenetically the two divisions regularly group together. In a 1998 publication, Thomas Cavalier-Smith referred to this group as the Neomycota. Phylogeny The 2007 classification of Kingdom Fungi is the result of a large-scale collaborative research effort involving dozens of mycologists and other scientists working on fungal taxonomy. It recognizes seven divisions within the Fungi, two of which—the Ascomycota and the Basidiomycota—are contained within a branch representing subkingdom Dikarya. The cladogram depicts the major fungal taxa and their relationship to opisthokont and unikont organisms. The lengths of t ...
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Rozella
''Rozella'' is a fungal genus of obligate endoparasites of a variety of hosts, including Oomycota, Chytridiomycota, and Blastocladiomycota. ''Rozella'' was circumscribed by French mycologist Marie Maxime Cornu in 1872. Considered one of the earliest diverging lineages of fungi, the widespread genus contains 27 species, with the most well studied being ''Rozella allomycis''. ''Rozella'' is a member of a large clade of fungi referred to as the Cryptomycota/Rozellomycota. While some can be maintained in dual culture with the host, most have not been cultured, but they have been detected, using molecular techniques, in soil samples, and in freshwater and marine ecosystems. Zoospores have been observed, along with cysts, and the cells of some species are attached to diatoms. Morphology ''Rozella'' species grow inside their hosts. At first, the thallus is unwalled and indistinguishable from the host. As growth continues, the thallus will either form a zoosporangium using the wall of th ...
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Nuclearia Sp Nikko
''Nuclearia'' is a nucleariid Nucleariida is a group of amoebae with filose pseudopods, known mostly from soils and freshwater. They are distinguished from the superficially similar vampyrellids mainly by having mitochondria with discoid cristae, in the absence of superfi ... genus. Species include: * Species ?'' Astrodisculus affinis'' Schouteden 1905 * Species ?'' Astrodisculus araneiformis'' Schewiakoff 1893 * Species ?'' Astrodisculus laciniatus'' Penard 1904 'Chlamydaster lacinatus'' (Penard 1904) Rainer 1968* Species ?'' Astrodisculus marinus'' Kufferath 1952 * Species ?'' Astrodisculus minutus'' Greeff 1869 * Species ?'' Heliophrys variabilis'' * Species ?'' Nuclearina similis'' * Species ?'' N. amphizonellae'' Penard 1917 * Species ?'' N. conspicua'' West 1903 * Species ?'' N. delicatula'' Cienkowsky 1865 * Species ?'' N. lohmanni'' Kufferath 1952 * Species ?'' N. pseudotenelloides'' * Species '' N. flavescens'' (Greef 1869) Patterson 1984 'Astrodisculus flavescen ...
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Holozoa
Holozoa is a group of organisms that includes animals and their closest single-celled relatives, but excludes fungi. ''Holozoa'' is also an old name for the tunicate genus ''Distaplia''.'' Because Holozoa is a clade including all organisms more closely related to animals than to fungi, some authors prefer it to recognizing paraphyletic groups that mostly consists of Holozoa minus animals. Perhaps the best-known holozoans, apart from animals, are the choanoflagellates, which strongly resemble the collar cells of sponges, and so were theorized to be related to sponges even in the 19th century. ''Proterospongia'' is an example of a colonial choanoflagellate that may shed light on the origin of sponges. The affinities of the other single-celled holozoans only began to be recognized in the 1990s. The sub-classification Ichthyosporea or Mesomycetozoea contains a number of mostly parasitic species. The amoeboid genera ''Ministeria'' and ''Capsaspora'' may be united in a group call ...
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Osmotrophy
Osmotrophy is a feeding mechanism involving the movement of dissolved organic compounds by osmosis for nutrition. Organisms that use osmotrophy are called osmotrophs. Some mixotrophic microorganisms use osmotrophy to derive some of their energy. Osmotrophy is used by a diversity of organisms. Organisms that use osmotrophy include bacteria, many species of protists and most fungi. Some macroscopic animals like molluscs, sponges, corals, brachiopods and echinoderms may use osmotrophic feeding as a supplemental food source. Process Osmotrophy as a means of gathering nutrients in microscopic organisms relies on cellular surface area to ensure that proper diffusion of nutrients occur in the cell. In other words, an osmotroph is an organism that has their "stomach" outside of their body. Sometimes, osmotrophs may still have an internal digestive system in addition to still using osmosis as a way to gain supplemental nutrients. Additionally, when organisms increase in size, the surfac ...
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Mucoromycotina
Mucoromycotina is a subphylum of uncertain placement in Fungi. It was considered part of the phylum Zygomycota, but recent phylogenetic studies have shown that it was polyphyletic and thus split into several groups, it is now thought to be a paraphyletic grouping. Mucoromycotina is currently composed of 3 orders, 61 genera, and 325 species. Some common characteristics seen throughout the species include: development of coenocytic mycelium, saprotrophic lifestyles, and filamentous. History Zygomycete fungi were originally only ascribed to the phylum Zygomycota. Such classifications were based on physiological characteristics with little genetic support. A genetic study of Zygomycete fungi performed in 2016 showed that further classification of the group was possible, thus splitting it into Zoopagomycota, Entomophthoromycota, Kickxellomycotina, and Mucoromycotina. The study put these groups as being sister to Dikarya, but without further research, their exact locations in Fungi ...
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