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Slit is a
family Family (from la, familia) is a Social group, group of people related either by consanguinity (by recognized birth) or Affinity (law), affinity (by marriage or other relationship). The purpose of the family is to maintain the well-being of its ...
of secreted
extracellular matrix In biology, the extracellular matrix (ECM), also called intercellular matrix, is a three-dimensional network consisting of extracellular macromolecules and minerals, such as collagen, enzymes, glycoproteins and hydroxyapatite that provide stru ...
proteins which play an important signalling role in the
neural development The development of the nervous system, or neural development (neurodevelopment), refers to the processes that generate, shape, and reshape the nervous system of animals, from the earliest stages of embryonic development to adulthood. The fie ...
of most
bilaterian The Bilateria or bilaterians are animals with bilateral symmetry as an embryo, i.e. having a left and a right side that are mirror images of each other. This also means they have a head and a tail (anterior-posterior axis) as well as a belly an ...
s (animals with bilateral symmetry). While lower animal species, including insects and nematode worms, possess a single Slit gene, humans, mice and other vertebrates possess three Slit homologs:
Slit1 Slit homolog 1 protein is a protein that in humans is encoded by the ''SLIT1'' gene In biology, the word gene (from , ; "... Wilhelm Johannsen coined the word gene to describe the Mendelian units of heredity..." meaning ''generation'' or ' ...
,
Slit2 Slit homolog 2 protein is a protein that in humans is encoded by the ''SLIT2'' gene. Interactions SLIT2 has been shown to interact Advocates for Informed Choice, dba interACT or interACT Advocates for Intersex Youth, is a 501(c)(3) nonprofit ...
and
Slit3 Slit homolog 3 protein is a protein that in humans is encoded by the ''SLIT3'' gene In biology, the word gene (from , ; "... Wilhelm Johannsen coined the word gene to describe the Mendelian units of heredity..." meaning ''generation'' or ' ...
. Human ''Slits'' have been shown to be involved in certain pathological conditions, such as cancer and inflammation. The ventral midline of the
central nervous system The central nervous system (CNS) is the part of the nervous system consisting primarily of the brain and spinal cord. The CNS is so named because the brain integrates the received information and coordinates and influences the activity of all par ...
is a key place where axons can either decide to cross and laterally project or stay on the same side of the brain. The main function of Slit proteins is to act as midline repellents, preventing the crossing of longitudinal axons through the midline of the central nervous system of most bilaterian animal species, including
mice A mouse ( : mice) is a small rodent. Characteristically, mice are known to have a pointed snout, small rounded ears, a body-length scaly tail, and a high breeding rate. The best known mouse species is the common house mouse (''Mus musculus' ...
,
chicken The chicken (''Gallus gallus domesticus'') is a domesticated junglefowl species, with attributes of wild species such as the grey and the Ceylon junglefowl that are originally from Southeastern Asia. Rooster or cock is a term for an adult m ...
s,
human Humans (''Homo sapiens'') are the most abundant and widespread species of primate, characterized by bipedalism and exceptional cognitive skills due to a large and complex brain. This has enabled the development of advanced tools, culture, ...
s,
insect Insects (from Latin ') are pancrustacean hexapod invertebrates of the class Insecta. They are the largest group within the arthropod phylum. Insects have a chitinous exoskeleton, a three-part body ( head, thorax and abdomen), three pairs ...
s,
nematode The nematodes ( or grc-gre, Νηματώδη; la, Nematoda) or roundworms constitute the phylum Nematoda (also called Nemathelminthes), with plant-Parasitism, parasitic nematodes also known as eelworms. They are a diverse animal phylum inhab ...
worms and
planarian A planarian is one of the many flatworms of the traditional class Turbellaria. It usually describes free-living flatworms of the order Tricladida (triclads), although this common name is also used for a wide number of free-living platyhelmint ...
s. It also prevents the recrossing of commissural axons. Its canonical receptor is
Robo Robo may refer to: *robot, an electro-mechanical device that can perform autonomous or preprogrammed tasks *Automation (robo-), roboticization *Robo (musician) (born 1955), Roberto Valverde, drummer in punk bands Black Flag and The Misfits *Robo ( ...
but it may have other receptors. The Slit protein is produced and secreted by cells within the
floor plate The floor plate is a structure integral to the developing nervous system of vertebrate organisms. Located on the ventral midline of the embryonic neural tube, the floor plate is a specialized glial structure that spans the anteroposterior axis f ...
(in vertebrates) or by midline glia (in insects) and diffuses outward. Slit/Robo signaling is important in
pioneer axon Pioneer axon is the classification given to axons that are the first to grow in a particular region. They originate from pioneer neurons, and have the main function of laying down the initial growing path that subsequent growing axons, dubbed follo ...
guidance.


Discovery

Slit mutations were first discovered in the Nuesslein-Volhard/Wieschaus patterning screen where they were seen to affect the external midline structures in the embryos of ''
Drosophila melanogaster ''Drosophila melanogaster'' is a species of fly (the taxonomic order Diptera) in the family Drosophilidae. The species is often referred to as the fruit fly or lesser fruit fly, or less commonly the "vinegar fly" or "pomace fly". Starting with Ch ...
'', also known as the common fruit fly. In this experiment, researchers screened for different mutations in ''D. melanogaster'' embryos that affected the neural development of axons in the central nervous system. They found that the mutations in commissureless genes (''Slit'' genes) lead to the
growth cones Growth may refer to: Biology * Auxology, the study of all aspects of human physical growth * Bacterial growth * Cell growth * Growth hormone, a peptide hormone that stimulates growth * Human development (biology) * Plant growth * Secondary grow ...
that typically cross the midline remaining on their own side. The findings from this screening suggest that ''Slit'' genes are responsible for repulsive signaling along the neuronal midline.


Structure

Slit1 Slit homolog 1 protein is a protein that in humans is encoded by the ''SLIT1'' gene In biology, the word gene (from , ; "... Wilhelm Johannsen coined the word gene to describe the Mendelian units of heredity..." meaning ''generation'' or ' ...
,
Slit2 Slit homolog 2 protein is a protein that in humans is encoded by the ''SLIT2'' gene. Interactions SLIT2 has been shown to interact Advocates for Informed Choice, dba interACT or interACT Advocates for Intersex Youth, is a 501(c)(3) nonprofit ...
, and
Slit3 Slit homolog 3 protein is a protein that in humans is encoded by the ''SLIT3'' gene In biology, the word gene (from , ; "... Wilhelm Johannsen coined the word gene to describe the Mendelian units of heredity..." meaning ''generation'' or ' ...
each have the same basic structure. A major identifying feature of the Slit protein is the four leucine-rich repeat (LRR) domains and the
N-terminus The N-terminus (also known as the amino-terminus, NH2-terminus, N-terminal end or amine-terminus) is the start of a protein or polypeptide, referring to the free amine group (-NH2) located at the end of a polypeptide. Within a peptide, the ami ...
. Slits are one of only two protein families that contain multiple LRR domains. These LRRs are followed by six repeats similar to epidermal growth factors (EGF) as well as a β-sandwich domain similar to laminin G. Directly after these sequences, invertebrates have one EGF repeat, whereas vertebrates have three EGF repeats. In each case, the EGF is followed by a
C-terminal The C-terminus (also known as the carboxyl-terminus, carboxy-terminus, C-terminal tail, C-terminal end, or COOH-terminus) is the end of an amino acid chain (protein or polypeptide), terminated by a free carboxyl group (-COOH). When the protein is ...
cystine knot A cystine knot is a protein structural motif containing three disulfide bridges (formed from pairs of cysteine residues). The sections of polypeptide that occur between two of them form a loop through which a third disulfide bond passes, forming ...
(CT) domain. It is possible for Slits to be cleaved into fragments of the
N-terminus The N-terminus (also known as the amino-terminus, NH2-terminus, N-terminal end or amine-terminus) is the start of a protein or polypeptide, referring to the free amine group (-NH2) located at the end of a polypeptide. Within a peptide, the ami ...
and
C-terminus The C-terminus (also known as the carboxyl-terminus, carboxy-terminus, C-terminal tail, C-terminal end, or COOH-terminus) is the end of an amino acid chain (protein or polypeptide), terminated by a free carboxyl group (-COOH). When the protein is ...
as a result of an assumed
proteolytic Proteolysis is the breakdown of proteins into smaller polypeptides or amino acids. Uncatalysed, the hydrolysis of peptide bonds is extremely slow, taking hundreds of years. Proteolysis is typically catalysed by cellular enzymes called protease ...
site between the fifth and sixth EGFs in ''
Drosophila ''Drosophila'' () is a genus of flies, belonging to the family Drosophilidae, whose members are often called "small fruit flies" or (less frequently) pomace flies, vinegar flies, or wine flies, a reference to the characteristic of many species ...
'' Slit, Caenorhabditis elegans Slit, rat ''Slit1'', rat ''Slit3'' and human ''Slit2''.


LRR domains

Slit LRR domains are thought to assist in controlling
neurite A neurite or neuronal process refers to any projection from the cell body of a neuron. This projection can be either an axon or a dendrite. The term is frequently used when speaking of immature or developing neurons, especially of cells in culture ...
outgrowth. The domains consist of five to seven LRRs each with disulfide-rich cap segments. Each LRR motif contains a LXXLXLXXN sequence (where L =
leucine Leucine (symbol Leu or L) is an essential amino acid that is used in the biosynthesis of proteins. Leucine is an α-amino acid, meaning it contains an α-amino group (which is in the protonated −NH3+ form under biological conditions), an α- ca ...
, N =
asparagine Asparagine (symbol Asn or N) is an α-amino acid that is used in the biosynthesis of proteins. It contains an α-amino group (which is in the protonated −NH form under biological conditions), an α-carboxylic acid group (which is in the depro ...
, X = any amino acid) which is one strand to a parallel
β-sheet The beta sheet, (β-sheet) (also β-pleated sheet) is a common motif of the regular protein secondary structure. Beta sheets consist of beta strands (β-strands) connected laterally by at least two or three backbone hydrogen bonds, forming a g ...
on the concave face of the LRR domain, while the back side of the domain consists of irregular loops. Each of the four domains of Slit are connected by short "linkers" which attach to the domains via a
disulfide bridge In biochemistry, a disulfide (or disulphide in British English) refers to a functional group with the structure . The linkage is also called an SS-bond or sometimes a disulfide bridge and is usually derived by the coupling of two thiol groups. In ...
, allowing the LRR region of Slit to remain very compact.


Vertebrate homologs

''Slit1'', ''Slit2'', and ''Slit3'' are all a human homologs of the 'Slit' gene found in ''Drosophila''. Each of these genes secretes a protein containing protein-protein interaction regions with leucine-rich repeats and EFGs. ''Slit2'' is mainly expressed in the spinal cord, where it repels motor axons. ''Slit1'' functions in the brain, and ''Slit3'' in the thyroid. Both ''Slit1'' and ''Slit2'' are found in the
murine The Old World rats and mice, part of the subfamily Murinae in the family Muridae, comprise at least 519 species. Members of this subfamily are called murines. In terms of species richness, this subfamily is larger than all mammal families ex ...
postnatal septum as well as in the neocortex. Further, ''Slit2'' participates in inhibiting leukocyte chemotaxis. In rats, ''Slit1'' was found in the neurons of adult and fetal forebrains. This shows that Slit proteins in mammals most likely contribute to the process of forming and maintaining the endocrine and nervous systems through interactions between proteins. ''Slit3'' is primarily expressed in the thyroid, in human umbilical vein endothelial cells ( HUVECs), as well as in endothelial cells from the lung and diaphragm of the mouse. ''Slit3'' interacts with ''Robo1'' and ''Robo4''.


Function


Guidance molecules

Guidance molecules act as cues by carrying information to receptive cells; administering this information which tells the cell and its entities how to properly align. Slit proteins behave as such when working in axonal guidance during the development of the nervous system. Similarly, these proteins help to orchestrate the development of various networks of tissues throughout the body. This role, also described as
cell migration Cell migration is a central process in the development and maintenance of multicellular organisms. Tissue formation during embryonic development, wound healing and immune responses all require the orchestrated movement of cells in particular dire ...
, is the primary role of Slit when interacting with Robo. It is most commonly found acting in neurons, endothelial cells and cancer cells.


Axon guidance

Chemorepellents help to direct growing axons toward the correct regions by directing them away from inappropriate regions. ''Slit'' genes, as well as their roundabout receptors, act as chemorepellents by helping prevent the wrong types of axons from crossing the midline of the central nervous system during establishment or remodeling of the neural circuits. The binding of Slit to any member of the Roundabout receptor family results in axon repelling through changes in the axon growth cone. The resulting repelling of axons is collectively termed as axonal guidance. ''Slit1'' and ''Slit2'' have both been seen to collapse and repel olfactory axons. Further evidence suggests that Slit also directs
interneuron Interneurons (also called internuncial neurons, relay neurons, association neurons, connector neurons, intermediate neurons or local circuit neurons) are neurons that connect two brain regions, i.e. not direct motor neurons or sensory neurons. I ...
s, particularly acting in the cortex. Positive effects are also correlated with slits. Slit2 begins the formation of axon branches through neural growth factor genes of the
dorsal root ganglia A dorsal root ganglion (or spinal ganglion; also known as a posterior root ganglion) is a cluster of neurons (a ganglion) in a dorsal root of a spinal nerve. The cell bodies of sensory neurons known as first-order neurons are located in the dorsal ...
.


Organogenesis

Several studies have shown that the interaction of Slit with its receptors is crucial in regulating the processes involved with the formation of organs. As previously discussed, these interactions play a key role in cell migration. Not surprisingly then, this gene has been found expressed during the development of tightly regulated tissues, such as the heart, lungs,
gonads A gonad, sex gland, or reproductive gland is a mixed gland that produces the gametes and sex hormones of an organism. Female reproductive cells are egg cells, and male reproductive cells are sperm. The male gonad, the testicle, produces sperm ...
, and ovaries. For example, in early development of the heart tube in ''Drosophila'', Slit and two of its Robo receptors guide migrating cardioblasts and pericardial cells in the dorsal midline. In addition, research on mice has shown that ''Slit3'' and its interaction with ''Robo1'' may be crucial to the development and maturation of lung tissue. Similarly, the expression of ''Slit3'' is
upregulated In the biological context of organisms' production of gene products, downregulation is the process by which a cell decreases the quantity of a cellular component, such as RNA or protein, in response to an external stimulus. The complementary pro ...
when aligning airway
epithelium Epithelium or epithelial tissue is one of the four basic types of animal tissue, along with connective tissue, muscle tissue and nervous tissue. It is a thin, continuous, protective layer of compactly packed cells with a little intercellul ...
with
endothelium The endothelium is a single layer of squamous endothelial cells that line the interior surface of blood vessels and lymphatic vessels. The endothelium forms an interface between circulating blood or lymph in the lumen and the rest of the vessel ...
. Due to its regulating function in tissue development, absence or mutations in the expression of these genes can result in abnormalities of these tissues. Several studies in mice and other vertebrates have shown that this deficit results in death almost immediately after birth.


Angiogenesis

The ''Slit2'' protein has recently been discovered to be associated with the development of new blood vessels from pre-existing vessels, or
angiogenesis Angiogenesis is the physiological process through which new blood vessels form from pre-existing vessels, formed in the earlier stage of vasculogenesis. Angiogenesis continues the growth of the vasculature by processes of sprouting and splitting ...
. Recent research has debated on whether this gene inhibits or stimulates this process. There has been significant proof to conclude that both are true, depending on the context. It has been concluded that the role of ''Slit'' in this process depends on which receptor it binds, the cellular context of its target cells, and/or other environmental factors. Slit2 has been implicated in promoting angiogenesis in mice (both
in vitro ''In vitro'' (meaning in glass, or ''in the glass'') studies are performed with microorganisms, cells, or biological molecules outside their normal biological context. Colloquially called "test-tube experiments", these studies in biology an ...
and
in vivo Studies that are ''in vivo'' (Latin for "within the living"; often not italicized in English) are those in which the effects of various biological entities are tested on whole, living organisms or cells, usually animals, including humans, and ...
), in the human placenta, and in tumorigenesis.


Clinical importance

Because of their part in
forebrain In the anatomy of the brain of vertebrates, the forebrain or prosencephalon is the Anatomical terms of location#Directional terms, rostral (forward-most) portion of the brain. The forebrain (prosencephalon), the midbrain (mesencephalon), and hin ...
development, during which they contribute to axonal guidance and guiding signals in the movement of cortical interneurons, Slit-Robo signal transduction mechanisms could possibly be used in therapy and treatment of neurological disorders and certain types of cancer. Procedures have been found in which Slit genes allow for precise control over vascular guidance cues influencing the organization of blood vessels during development. Slit also plays a large role in
angiogenesis Angiogenesis is the physiological process through which new blood vessels form from pre-existing vessels, formed in the earlier stage of vasculogenesis. Angiogenesis continues the growth of the vasculature by processes of sprouting and splitting ...
. With increased knowledge of this relationship, treatments could be developed for complications with development of embryo vasculature, female reproductive cycling, tumor grown, and
metastasis Metastasis is a pathogenic agent's spread from an initial or primary site to a different or secondary site within the host's body; the term is typically used when referring to metastasis by a cancerous tumor. The newly pathological sites, then, ...
, ischemic cardiovascular diseases, or ocular disorders.


Cancer

Due to its pivotal role in controlling cell migration, abnormalities or absences in the expression of ''Slit1'', ''Slit2'' and ''Slit3'' are associated with a variety of cancers. In particular, Slit-Robo interaction has been implicated in reproductive and hormone dependent cancers, particularly in females. Under normal function, these genes act as tumor suppressors. Therefore, deletion or lack of expression of these genes is associated with
tumorigenesis Carcinogenesis, also called oncogenesis or tumorigenesis, is the formation of a cancer, whereby normal cells are transformed into cancer cells. The process is characterized by changes at the cellular, genetic, and epigenetic levels and abnor ...
, particularly tumors within the epithelium of the ovaries, endometrium, and
cervix The cervix or cervix uteri (Latin, 'neck of the uterus') is the lower part of the uterus (womb) in the human female reproductive system. The cervix is usually 2 to 3 cm long (~1 inch) and roughly cylindrical in shape, which changes during ...
. Samples of surface epithelium in cancer ridden ovaries has exhibited that these cells show decreased expression of ''Slit2'' and ''Slit3''. In addition, absence of these genes allows the migration of cancer cells and thus is associated with increased cancer progression and increased
metastasis Metastasis is a pathogenic agent's spread from an initial or primary site to a different or secondary site within the host's body; the term is typically used when referring to metastasis by a cancerous tumor. The newly pathological sites, then, ...
. The role of this gene and its place in cancer treatment and development is becoming increasingly unraveled but increasingly complex.


References

{{reflist, colwidth=35em Developmental neuroscience Protein families