Lichexanthone
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Lichexanthone is an
organic compound In chemistry, organic compounds are generally any chemical compounds that contain carbon-hydrogen or carbon-carbon bonds. Due to carbon's ability to catenate (form chains with other carbon atoms), millions of organic compounds are known. The ...
in the structural class of chemicals known as
xanthone Xanthone is an organic compound with the molecular formula O 6H4CO. It is a white solid. In 1939, xanthone was introduced as an insecticide and it currently finds uses as Insecticide, ovicide for codling moth eggs and as a larvicide. Xanthone ...
s. Lichexanthone was first isolated and identified by Japanese chemists from a species of leafy lichen in the 1940s. The compound is known to occur in many
lichen A lichen ( , ) is a composite organism that arises from algae or cyanobacteria living among filaments of multiple fungi species in a mutualistic relationship.taxonomy Taxonomy is the practice and science of categorization or classification. A taxonomy (or taxonomical classification) is a scheme of classification, especially a hierarchical classification, in which things are organized into groups or types. ...
of species in several
genera Genus ( plural genera ) is a taxonomic rank used in the biological classification of living and fossil organisms as well as viruses. In the hierarchy of biological classification, genus comes above species and below family. In binomial nomenclat ...
, such as ''
Pertusaria ''Pertusaria'' is a large genus of warty crustose lichens in the Pertusariaceae family.Field Guide to California Lichens, Stephen Sharnoff, Yale University Press, 2014, The fruiting bodies are usually modified apothecia that immersed in warts ...
'' and ''
Pyxine ''Pyxine'' is a genus of foliose lichens in the family Caliciaceae. The genus has a widespread distribution in tropical regions. The presence or absence of the compound lichexanthone is a character Character or Characters may refer to: Arts ...
''. More than a dozen lichen species have a variation of the word lichexanthone incorporated as part of their
binomial name In taxonomy, binomial nomenclature ("two-term naming system"), also called nomenclature ("two-name naming system") or binary nomenclature, is a formal system of naming species of living things by giving each a name composed of two parts, bot ...
. The presence of lichexanthone in lichens causes them to
fluoresce Fluorescence is the emission of light by a substance that has absorbed light or other electromagnetic radiation. It is a form of luminescence. In most cases, the emitted light has a longer wavelength, and therefore a lower photon energy, tha ...
a greenish-yellow colour under long-wavelength
UV light Ultraviolet (UV) is a form of electromagnetic radiation with wavelength from 10 nm (with a corresponding frequency around 30  PHz) to 400 nm (750  THz), shorter than that of visible light, but longer than X-rays. UV radiation i ...
; this feature is used to help identify some species. Lichexanthone is also found in several plants (many are from the families
Annonaceae The Annonaceae are a Family (biology), family of flowering plants consisting of trees, shrubs, or rarely lianas commonly known as the custard apple family or soursop family. With 108 accepted genera and about 2400 known species, it is the largest ...
and
Rutaceae The Rutaceae is a family, commonly known as the rueRUTACEAE
in BoDD – Botanical Derm ...
), and some species of
fungi A fungus ( : fungi or funguses) is any member of the group of eukaryotic organisms that includes microorganisms such as yeasts and molds, as well as the more familiar mushrooms. These organisms are classified as a kingdom, separately from ...
that do not form lichens. In lichens, the
biosynthesis Biosynthesis is a multi-step, enzyme-catalyzed process where substrates are converted into more complex products in living organisms. In biosynthesis, simple compounds are modified, converted into other compounds, or joined to form macromolecules. ...
of lichexanthone occurs through a set of
enzymatic reaction Enzyme catalysis is the increase in the rate of a process by a biological molecule, an "enzyme". Most enzymes are proteins, and most such processes are chemical reactions. Within the enzyme, generally catalysis occurs at a localized site, calle ...
s that start with the molecule
acetyl-CoA Acetyl-CoA (acetyl coenzyme A) is a molecule that participates in many biochemical reactions in protein, carbohydrate and lipid metabolism. Its main function is to deliver the acetyl group to the citric acid cycle (Krebs cycle) to be oxidized for ...
and sequentially add successive units, forming a longer chain that is cyclized into a double-ring structure. Although it has been suggested that lichexanthone functions in nature as a photoprotectant—protecting resident
alga Algae (; singular alga ) is an informal term for a large and diverse group of photosynthetic eukaryotic organisms. It is a polyphyletic grouping that includes species from multiple distinct clades. Included organisms range from unicellular mi ...
l populations (
photobiont A lichen ( , ) is a composite organism that arises from algae or cyanobacteria living among filaments of multiple fungi species in a mutualistic relationship.solar radiation Solar irradiance is the power per unit area (surface power density) received from the Sun in the form of electromagnetic radiation in the wavelength range of the measuring instrument. Solar irradiance is measured in watts per square metre (W/m ...
—its complete ecological function is not fully understood. Some biological activities of lichexanthone that have been demonstrated in the laboratory include
antibacterial An antibiotic is a type of antimicrobial substance active against bacteria. It is the most important type of antibacterial agent for fighting bacterial infections, and antibiotic medications are widely used in the treatment and prevention of ...
,
larvicidal A larvicide (alternatively larvacide) is an insecticide that is specifically targeted against the larval life stage of an insect. Their most common use is against mosquitoes. Larvicides may be contact poisons, stomach poisons, growth regulators, o ...
, and
sperm motility Sperm motility describes the ability of sperm to move properly through the female reproductive tract (internal fertilization) or through water (external fertilization) to reach the egg. Sperm motility can also be thought of as the ''quality'', whi ...
-enhancing activities. Many lichexanthone
derivatives The derivative of a function is the rate of change of the function's output relative to its input value. Derivative may also refer to: In mathematics and economics * Brzozowski derivative in the theory of formal languages * Formal derivative, an ...
are known, some produced naturally in lichens, and others created synthetically; like lichexanthone, some of these derivatives are also biologically active.


History

Lichexanthone was first reported by Japanese chemists
Yasuhiko Asahina Yasuhiko Asahina (朝比奈泰彦 ''Asahina Yasuhiko''; April 16, 1881 – June 30, 1975) was a Japanese chemist and lichenologist. Early life During his childhood, Asahina developed an interest in plants. In 1902, he enrolled in the School of ...
and Hisasi Nogami in 1942. They isolated the
lichen product Lichen products, also known as lichen substances, are organic compounds produced by a lichen. Specifically, they are secondary metabolites. Lichen products are represented in several different chemical classes, including terpenoids, orcinol deriva ...
from ''Parmelia formosana'' (known today as '' Hypotrachyna osseoalba''), a lichen that is widespread in Asia. Another early publication described its isolation from ''Parmelia quercina'' (now '' Parmelina quercina''). Lichexanthone was the first
xanthone Xanthone is an organic compound with the molecular formula O 6H4CO. It is a white solid. In 1939, xanthone was introduced as an insecticide and it currently finds uses as Insecticide, ovicide for codling moth eggs and as a larvicide. Xanthone ...
to be reported from lichens, and it was given its name by Asahina and Nogami for this reason. Asahina and Nogami used a chemical method called potash fusion (
decomposition Decomposition or rot is the process by which dead organic substances are broken down into simpler organic or inorganic matter such as carbon dioxide, water, simple sugars and mineral salts. The process is a part of the nutrient cycle and is e ...
with a hot solution of the strong base
potassium hydroxide Potassium hydroxide is an inorganic compound with the formula K OH, and is commonly called caustic potash. Along with sodium hydroxide (NaOH), KOH is a prototypical strong base. It has many industrial and niche applications, most of which exp ...
) on lichexanthone to produce
orcinol Orcinol is an organic compound with the formula CH3C6H3(OH)2. It occurs in many species of lichens including ''Roccella tinctoria'' and ''Lecanora''. Orcinol has been detected in the "toxic glue" of the ant species ''Camponotus saundersi''. It is ...
. The earliest syntheses of lichexanthone used orsellinic aldehyde and
phloroglucinol Phloroglucinol is an organic compound with the formula C6H3(OH)3. It is a colorless solid. It is used in the synthesis of pharmaceuticals and explosives. Phloroglucinol is one of three isomeric benzenetriols. The other two isomers are hydroxyqu ...
as starting reactants in the Tanase method. This method, one of six standard ways of synthesising xanthone derivatives, enables the creation of partially
methylated In the chemical sciences, methylation denotes the addition of a methyl group on a substrate, or the substitution of an atom (or group) by a methyl group. Methylation is a form of alkylation, with a methyl group replacing a hydrogen atom. These t ...
polyhydroxyxanthones. In the reaction, the two substrates, in the presence of
hydrochloric acid Hydrochloric acid, also known as muriatic acid, is an aqueous solution of hydrogen chloride. It is a colorless solution with a distinctive pungent smell. It is classified as a strong acid Acid strength is the tendency of an acid, symbol ...
and
acetic acid Acetic acid , systematically named ethanoic acid , is an acidic, colourless liquid and organic compound with the chemical formula (also written as , , or ). Vinegar is at least 4% acetic acid by volume, making acetic acid the main component ...
, produce a
fluorone Fluorone is a heterocyclic chemical compound. It forms the core structure for various chemicals, most notably fluorone dyes, including fluorescein, erythrosine and rhodamine. It is an isomer of xanthone Xanthone is an organic compound with t ...
derivative that is subsequently reduced to give a
xanthene Xanthene (9''H''-xanthene, 10''H''-9-oxaanthracene) is the organic compound with the formula CH2 6H4sub>2O. It is a yellow solid that is soluble in common organic solvents. Xanthene itself is an obscure compound, but many of its derivatives are us ...
derivative, which, after subsequent methylation and
oxidation Redox (reduction–oxidation, , ) is a type of chemical reaction in which the oxidation states of substrate change. Oxidation is the loss of electrons or an increase in the oxidation state, while reduction is the gain of electrons or a d ...
, leads to a xanthone with three methoxy groups. Afterwards, one of the methoxy groups is
demethylated Demethylation is the chemical process resulting in the removal of a methyl group (CH3) from a molecule. A common way of demethylation is the replacement of a methyl group by a hydrogen atom, resulting in a net loss of one carbon and two hydrogen ato ...
to yield lichexanthone. A simpler synthesis, starting from everninic acid (2-hydroxy-4-methoxy-6-methylbenzoic acid) and phloroglucinol, was proposed in 1956. These early syntheses also helped to confirm the structure of lichexanthone before
spectral methods Spectral methods are a class of techniques used in applied mathematics and scientific computing to numerically solve certain differential equations. The idea is to write the solution of the differential equation as a sum of certain " basis functio ...
of analysis were widely available. In 1977, Harris and Hay proposed a biogenetically modelled synthesis of lichexanthone starting from the polycarbonyl compound 3,5,7,9,11,13-hexaoxotetradecanoic acid. In this synthesis, an
aldol In organic chemistry, an aldol describes a structural motif consisting of a 3-hydroxy ketone or 3-hydroxyaldehyde. Aldols are usually the product of aldol addition. When used alone, the term "aldol" may refer to 3-hydroxybutanal. Stereochemistr ...
cyclization A cyclic compound (or ring compound) is a term for a compound in the field of chemistry in which one or more series of atoms in the compound is connected to form a ring. Rings may vary in size from three to many atoms, and include examples where al ...
between positions 8 and 13 followed by a Claisen cyclization between positions 1 and 6 leads to the formation of a group of compounds that includes lichexanthone.


Properties

Lichexanthone is a member of the class of chemical compounds called
xanthone Xanthone is an organic compound with the molecular formula O 6H4CO. It is a white solid. In 1939, xanthone was introduced as an insecticide and it currently finds uses as Insecticide, ovicide for codling moth eggs and as a larvicide. Xanthone ...
s. Specifically, it is a 9''H''-xanthen-9-one substituted by a
hydroxy group In chemistry, a hydroxy or hydroxyl group is a functional group with the chemical formula and composed of one oxygen atom covalently bonded to one hydrogen atom. In organic chemistry, alcohols and carboxylic acids contain one or more hydroxy ...
at position 1, a
methyl group In organic chemistry, a methyl group is an alkyl derived from methane, containing one carbon atom bonded to three hydrogen atoms, having chemical formula . In formulas, the group is often abbreviated as Me. This hydrocarbon group occurs in many ...
at position 8 and
methoxy group In organic chemistry, a methoxy group is the functional group consisting of a methyl group bound to oxygen. This alkoxy group has the formula . On a benzene ring, the Hammett equation classifies a methoxy substituent at the ''para'' position as ...
s at positions 3 and 6. Its
IUPAC name In chemical nomenclature, a preferred IUPAC name (PIN) is a unique name, assigned to a chemical substance and preferred among the possible names generated by IUPAC nomenclature. The "preferred IUPAC nomenclature" provides a set of rules for cho ...
is 1-hydroxy-3,6-dimethoxy-8-methyl-9''H''-xanthen-9-one. Lichexanthone's
molecular formula In chemistry, a chemical formula is a way of presenting information about the chemical proportions of atoms that constitute a particular chemical compound or molecule, using chemical element symbols, numbers, and sometimes also other symbols, ...
is C16H14O5; it has a
molecular mass The molecular mass (''m'') is the mass of a given molecule: it is measured in daltons (Da or u). Different molecules of the same compound may have different molecular masses because they contain different isotopes of an element. The related quanti ...
of 286.27  grams per mole. In its purified
crystal A crystal or crystalline solid is a solid material whose constituents (such as atoms, molecules, or ions) are arranged in a highly ordered microscopic structure, forming a crystal lattice that extends in all directions. In addition, macros ...
line form, it exists as long yellow prisms with a
melting point The melting point (or, rarely, liquefaction point) of a substance is the temperature at which it changes state from solid to liquid. At the melting point the solid and liquid phase exist in equilibrium. The melting point of a substance depends ...
of . Its
crystal structure In crystallography, crystal structure is a description of the ordered arrangement of atoms, ions or molecules in a crystal, crystalline material. Ordered structures occur from the intrinsic nature of the constituent particles to form symmetric pat ...
is part of the
monoclinic crystal system In crystallography, the monoclinic crystal system is one of the seven crystal systems. A crystal system is described by three vectors. In the monoclinic system, the crystal is described by vectors of unequal lengths, as in the orthorhombic sy ...
, in the
space group In mathematics, physics and chemistry, a space group is the symmetry group of an object in space, usually in three dimensions. The elements of a space group (its symmetry operations) are the rigid transformations of an object that leave it unchan ...
called P21/''c''. An
ethanol Ethanol (abbr. EtOH; also called ethyl alcohol, grain alcohol, drinking alcohol, or simply alcohol) is an organic compound. It is an Alcohol (chemistry), alcohol with the chemical formula . Its formula can be also written as or (an ethyl ...
ic solution of lichexanthone reacts with
iron(III) chloride Iron(III) chloride is the inorganic compound with the formula . Also called ferric chloride, it is a common compound of iron in the +3 oxidation state. The anhydrous compound is a crystalline solid with a melting point of 307.6 °C. The col ...
to produce a purple colour; an
acetic acid Acetic acid , systematically named ethanoic acid , is an acidic, colourless liquid and organic compound with the chemical formula (also written as , , or ). Vinegar is at least 4% acetic acid by volume, making acetic acid the main component ...
solution containing lichexanthone will emit a greenish
fluorescence Fluorescence is the emission of light by a substance that has absorbed light or other electromagnetic radiation. It is a form of luminescence. In most cases, the emitted light has a longer wavelength, and therefore a lower photon energy, tha ...
after adding a drop of concentrated
sulfuric acid Sulfuric acid (American spelling and the preferred IUPAC name) or sulphuric acid ( Commonwealth spelling), known in antiquity as oil of vitriol, is a mineral acid composed of the elements sulfur, oxygen and hydrogen, with the molecular formu ...
. The presence of the compound in lichens causes them to fluoresce yellow under long-wavelength
UV light Ultraviolet (UV) is a form of electromagnetic radiation with wavelength from 10 nm (with a corresponding frequency around 30  PHz) to 400 nm (750  THz), shorter than that of visible light, but longer than X-rays. UV radiation i ...
, a property that is used as a tool in lichen species identification. The
mass spectrum A mass spectrum is a histogram plot of intensity vs. ''mass-to-charge ratio'' (''m/z'') in a chemical sample, usually acquired using an instrument called a ''mass spectrometer''. Not all mass spectra of a given substance are the same; for example ...
of lichexanthone was reported in 1968. It features a strong parent peak at m/z (
mass-to-charge ratio The mass-to-charge ratio (''m''/''Q'') is a physical quantity relating the ''mass'' (quantity of matter) and the ''electric charge'' of a given particle, expressed in units of kilograms per coulomb (kg/C). It is most widely used in the electrody ...
) of 286, and weaker-intensity rearrangement peaks at 257, 243, and 200. A 2009 study on the
electrochemical Electrochemistry is the branch of physical chemistry concerned with the relationship between electrical potential difference, as a measurable and quantitative phenomenon, and identifiable chemical change, with the potential difference as an outco ...
reduction of the compound used techniques such as
cyclic voltammetry Cyclic voltammetry (CV) is a type of potentiodynamic electrochemical measurement. In a cyclic voltammetry experiment, the working electrode potential is ramped linearly versus time. Unlike in linear sweep voltammetry, after the set potential is re ...
with rotating disc and rotating ring electrodes, and controlled-potential electrolysis to characterise the reduction mechanism of lichexanthone, and to better understand the nature of its
chemical reactivity In chemistry, reactivity is the impulse for which a chemical substance undergoes a chemical reaction, either by itself or with other materials, with an overall release of energy. ''Reactivity'' refers to: * the chemical reactions of a single sub ...
. The complete
proton nuclear magnetic resonance Proton nuclear magnetic resonance (proton NMR, hydrogen-1 NMR, or 1H NMR) is the application of nuclear magnetic resonance in NMR spectroscopy with respect to hydrogen-1 nuclei within the molecules of a substance, in order to determine the struct ...
(1H NMR) and
carbon-13 nuclear magnetic resonance Carbon-13 (C13) nuclear magnetic resonance (most commonly known as carbon-13 NMR spectroscopy or 13C NMR spectroscopy or sometimes simply referred to as carbon NMR) is the application of nuclear magnetic resonance (NMR) spectroscopy to carbon. It is ...
(13C NMR) spectral assignments for lichexanthone were reported in 2010, as well as its crystal structure determined using
X-ray diffraction X-ray crystallography is the experimental science determining the atomic and molecular structure of a crystal, in which the crystalline structure causes a beam of incident X-rays to diffract into many specific directions. By measuring the angles ...
.


Biological activities

Various biological activities of lichexanthone, studied using ''
in vitro ''In vitro'' (meaning in glass, or ''in the glass'') studies are performed with microorganisms, cells, or biological molecules outside their normal biological context. Colloquially called "test-tube experiments", these studies in biology an ...
'' experiments, have been recorded in the scientific literature. The
antimicrobial An antimicrobial is an agent that kills microorganisms or stops their growth. Antimicrobial medicines can be grouped according to the microorganisms they act primarily against. For example, antibiotics are used against bacteria, and antifungals ar ...
activity of the bark-dwelling lichen '' Marcelaria benguelensis'' is largely attributed to the presence of lichexanthone. Chemically unmodified lichexanthone has weak
antimycobacterial An antimycobacterial is a type of medication used to treat Mycobacteria infections. Types include: * Tuberculosis treatment Tuberculosis management describes the techniques and procedures utilized for treating tuberculosis (TB). The medical st ...
activity against ''
Mycobacterium tuberculosis ''Mycobacterium tuberculosis'' (M. tb) is a species of pathogenic bacteria in the family Mycobacteriaceae and the causative agent of tuberculosis. First discovered in 1882 by Robert Koch, ''M. tuberculosis'' has an unusual, waxy coating on its c ...
'' and '' M. aurum''. However, a dihydropyrane derivative of lichexanthone had antimycobacterial activity similar to that of
drugs A drug is any chemical substance that causes a change in an organism's physiology or psychology when consumed. Drugs are typically distinguished from food and substances that provide nutritional support. Consumption of drugs can be via inhalat ...
commonly used to treat
tuberculosis Tuberculosis (TB) is an infectious disease usually caused by '' Mycobacterium tuberculosis'' (MTB) bacteria. Tuberculosis generally affects the lungs, but it can also affect other parts of the body. Most infections show no symptoms, in ...
. Lichexanthone has a strong
antibacterial An antibiotic is a type of antimicrobial substance active against bacteria. It is the most important type of antibacterial agent for fighting bacterial infections, and antibiotic medications are widely used in the treatment and prevention of ...
effect towards ''
Bacillus subtilis ''Bacillus subtilis'', known also as the hay bacillus or grass bacillus, is a Gram-positive, catalase-positive bacterium, found in soil and the gastrointestinal tract of ruminants, humans and marine sponges. As a member of the genus ''Bacillu ...
'', and also inhibits the growth of methicillin-resistant ''Staphylococcus aureus''. In contrast, no
antiparasitic Antiparasitics are a class of medications which are indicated for the treatment of parasitic diseases, such as those caused by helminths, amoeba, ectoparasites, parasitic fungi, and protozoa, among others. Antiparasitics target the parasitic agent ...
activity was detected against either ''
Plasmodium falciparum ''Plasmodium falciparum'' is a Unicellular organism, unicellular protozoan parasite of humans, and the deadliest species of ''Plasmodium'' that causes malaria in humans. The parasite is transmitted through the bite of a female ''Anopheles'' mosqu ...
'' or ''
Trypanosoma brucei ''Trypanosoma brucei'' is a species of parasitic Kinetoplastida, kinetoplastid belonging to the genus ''Trypanosoma'' that is present in sub-Saharan Africa. Unlike other protozoan parasites that normally infect blood and tissue cells, it is exclus ...
,'' nor did it have any
cytotoxic Cytotoxicity is the quality of being toxic to cells. Examples of toxic agents are an immune cell or some types of venom, e.g. from the puff adder (''Bitis arietans'') or brown recluse spider (''Loxosceles reclusa''). Cell physiology Treating cells ...
activity against a variety of cancer
cell line An immortalised cell line is a population of cells from a multicellular organism which would normally not proliferate indefinitely but, due to mutation, have evaded normal cellular senescence and instead can keep undergoing division. The cell ...
s. In laboratory tests, the presence of lichexanthone enhances the
motility Motility is the ability of an organism to move independently, using metabolic energy. Definitions Motility, the ability of an organism to move independently, using metabolic energy, can be contrasted with sessility, the state of organisms th ...
of
human sperm A spermatozoon (; also spelled spermatozoön; ; ) is a motile sperm cell, or moving form of the haploid cell that is the male gamete. A spermatozoon joins an ovum to form a zygote. (A zygote is a single cell, with a complete set of chromosomes, t ...
; there are only a few compounds known to have this effect. The chemical also has
larvicidal A larvicide (alternatively larvacide) is an insecticide that is specifically targeted against the larval life stage of an insect. Their most common use is against mosquitoes. Larvicides may be contact poisons, stomach poisons, growth regulators, o ...
activity against second-instar
larvae A larva (; plural larvae ) is a distinct juvenile form many animals undergo before metamorphosis into adults. Animals with indirect development such as insects, amphibians, or cnidarians typically have a larval phase of their life cycle. The ...
of the mosquito ''
Aedes aegypti ''Aedes aegypti'', the yellow fever mosquito, is a mosquito that can spread dengue fever, chikungunya, Zika fever, Mayaro and yellow fever viruses, and other disease agents. The mosquito can be recognized by black and white markings on its legs ...
'', a
vector Vector most often refers to: *Euclidean vector, a quantity with a magnitude and a direction *Vector (epidemiology), an agent that carries and transmits an infectious pathogen into another living organism Vector may also refer to: Mathematic ...
of the
Dengue virus ''Dengue virus'' (DENV) is the cause of dengue fever. It is a mosquito-borne, single positive-stranded RNA virus of the family ''Flaviviridae''; genus ''Flavivirus''. Four serotypes of the virus have been found, a reported fifth has yet to be co ...
.


Biosynthesis

In lichens, biosynthesis of lichexanthone occurs through the acetate-malonate
metabolic pathway In biochemistry, a metabolic pathway is a linked series of chemical reactions occurring within a cell. The reactants, products, and intermediates of an enzymatic reaction are known as metabolites, which are modified by a sequence of chemical reac ...
, which uses
acetyl coenzyme A Acetyl-CoA (acetyl coenzyme A) is a molecule that participates in many biochemical reactions in protein, carbohydrate and lipid metabolism. Its main function is to deliver the acetyl group to the citric acid cycle (Krebs cycle) to be oxidized for ...
as a
precursor Precursor or Precursors may refer to: *Precursor (religion), a forerunner, predecessor ** The Precursor, John the Baptist Science and technology * Precursor (bird), a hypothesized genus of fossil birds that was composed of fossilized parts of unr ...
. In this pathway,
polyketide Polyketides are a class of natural products derived from a precursor molecule consisting of a chain of alternating ketone (or reduced forms of a ketone) and methylene groups: (-CO-CH2-). First studied in the early 20th century, discovery, biosynth ...
s are created by the sequential reactions of a variety of
polyketide synthase Polyketides are a class of natural products derived from a precursor molecule consisting of a chain of alternating ketone (or reduced forms of a ketone) and methylene groups: (-CO-CH2-). First studied in the early 20th century, discovery, biosynth ...
s. These
enzyme Enzymes () are proteins that act as biological catalysts by accelerating chemical reactions. The molecules upon which enzymes may act are called substrates, and the enzyme converts the substrates into different molecules known as products. A ...
s control a number of enzymatic reactions through several coordinated
active site In biology and biochemistry, the active site is the region of an enzyme where substrate molecules bind and undergo a chemical reaction. The active site consists of amino acid residues that form temporary bonds with the substrate (binding site) a ...
s on a large multienzyme
protein complex A protein complex or multiprotein complex is a group of two or more associated polypeptide chains. Protein complexes are distinct from multienzyme complexes, in which multiple catalytic domains are found in a single polypeptide chain. Protein c ...
. The structure of lichen xanthones is derived by linear
condensation Condensation is the change of the state of matter from the gas phase into the liquid phase, and is the reverse of vaporization. The word most often refers to the water cycle. It can also be defined as the change in the state of water vapor to ...
of seven
acetate An acetate is a salt (chemistry), salt formed by the combination of acetic acid with a base (e.g. Alkali metal, alkaline, Alkaline earth metal, earthy, Transition metal, metallic, nonmetallic or radical Radical (chemistry), base). "Acetate" als ...
and
malonate The conjugate acids are in :Carboxylic acids. {{Commons category, Carboxylate ions, Carboxylate anions Carbon compounds Oxyanions ...
units with one
orsellinic acid Orsellinic acid, more specifically ''o''-orsellinic acid, is a phenolic acid. It is of importance in the biochemistry of lichens, from which it can be extracted. It is a common subunit of depsides. Chemistry It can be prepared by the oxi ...
-type cyclisation. The two rings are joined by a ketonic carbon and by an
ether In organic chemistry, ethers are a class of compounds that contain an ether group—an oxygen atom connected to two alkyl or aryl groups. They have the general formula , where R and R′ represent the alkyl or aryl groups. Ethers can again be c ...
-oxygen arising from cyclodehydration (i.e., a
dehydration reaction In chemistry, a dehydration reaction is a chemical reaction that involves the loss of water from the reacting molecule or ion. Dehydration reactions are common processes, the reverse of a hydration reaction. Dehydration reactions in organic che ...
leading to the formation of a
cyclic compound A cyclic compound (or ring compound) is a term for a compound in the field of chemistry in which one or more series of atoms in the compound is connected to form a ring. Rings may vary in size from three to many atoms, and include examples where al ...
). The exact mechanism is not known, but this ring closure might proceed through a
benzophenone Benzophenone is the organic compound with the formula (C6H5)2CO, generally abbreviated Ph2CO. It is a white solid that is soluble in organic solvents. Benzophenone is a widely used building block in organic chemistry, being the parent diarylket ...
intermediate that could dehydrate to yield the central
pyrone Pyrones or pyranones are a class of heterocyclic chemical compounds. They contain an unsaturated six-membered ring containing one oxygen atom and a ketone functional group. There are two isomers denoted as 2-pyrone and 4-pyrone. The 2-pyrone (or ...
core of lichexanthone. A standardized
high-performance liquid chromatography High-performance liquid chromatography (HPLC), formerly referred to as high-pressure liquid chromatography, is a technique in analytical chemistry used to separate, identify, and quantify each component in a mixture. It relies on pumps to pa ...
(HPLC) assay has been described to identify many lichen-derived substances, including lichexanthone and many other xanthones; because many xanthone
isomer In chemistry, isomers are molecules or polyatomic ions with identical molecular formulae – that is, same number of atoms of each element – but distinct arrangements of atoms in space. Isomerism is existence or possibility of isomers. Iso ...
s have different
retention time In chemical analysis, chromatography is a laboratory technique for the separation of a mixture into its components. The mixture is dissolved in a fluid solvent (gas or liquid) called the ''mobile phase'', which carries it through a system (a ...
s, this technique can be used to identify complex mixtures of structurally similar derivatives. The technique was later refined to couple the HPLC output with a photodiode array detector to screen for xanthones based on their specific ultraviolet–visible spectra. In this way, lichexanthone is detected by monitoring its retention time, and verifying the presence of three peaks representing wavelengths of maximum absorption (λmax) at 208, 242, and 310  nm.


Occurrence

Although first isolated from foliose (leafy) ''
Parmelia Parmelia may refer to: * Parmelia (barque), the vessel that in 1829 transported the first settlers of the British colony of Western Australia * ''Parmelia'' (fungus), a genus of lichens with global distribution * Parmelia, Western Australia Pa ...
'' species, lichexanthone has since been found in a wide variety of lichens. For example, in the foliose genus ''
Hypotrachyna ''Hypotrachyna'' is a genus of lichenized fungi within the family Parmeliaceae The Parmeliaceae is a large and diverse family of Lecanoromycetes. With over 2700 species in 71 genera, it is the largest family of lichen-forming fungi. The m ...
'', it is found in about a dozen species; when present, it usually completely replaces other cortical substances common in that genus, like
atranorin Atranorin is a chemical substance produced by some species of lichen. It is a secondary metabolite belonging to a group of compounds known as depsides. Atranorin has analgesic, anti-inflammatory, antibacterial, antifungal, cytotoxic, antioxidant, ...
and
usnic acid Usnic acid is a naturally occurring dibenzofuran derivative found in several lichen species with the formula C18H16O7. It was first isolated by German scientist W. Knop in 1844 and first synthesized between 1933-1937 by Curd and Robertson. Usnic a ...
. The presence or absence of lichexanthone is a
character Character or Characters may refer to: Arts, entertainment, and media Literature * ''Character'' (novel), a 1936 Dutch novel by Ferdinand Bordewijk * ''Characters'' (Theophrastus), a classical Greek set of character sketches attributed to The ...
used in classifying species of the predominantly tropical genus ''
Pyxine ''Pyxine'' is a genus of foliose lichens in the family Caliciaceae. The genus has a widespread distribution in tropical regions. The presence or absence of the compound lichexanthone is a character Character or Characters may refer to: Arts ...
''; of about 70 species in the genus, 20 contain lichexanthone. This represents the largest group of foliose lichens with the compound, as it is generally restricted to some groups of tropical
crustose lichen Crustose lichens are lichens that form a crust which strongly adheres to the Substrate (biology), substrate (soil, rock, tree bark, etc.), making separation from the substrate impossible without destruction. The basic structure of crustose lichen ...
s, chiefly pyrenocarps and
Graphidaceae The Graphidaceae are a family of lichens in the order Ostropales. Distribution and ecology The vast majority of Graphidaceae species are restricted to the tropics. Most Graphidaceae species are epiphytic (i.e. they grow only on plants). Gener ...
. The large genus ''
Pertusaria ''Pertusaria'' is a large genus of warty crustose lichens in the Pertusariaceae family.Field Guide to California Lichens, Stephen Sharnoff, Yale University Press, 2014, The fruiting bodies are usually modified apothecia that immersed in warts ...
'' relies heavily on thallus chemistry to distinguish and classify species, some of which differ only in the presence or absence of a single secondary chemical. Lichexanthone, norlichexanthone, and their chlorinated derivatives are common in this genus. Although normally considered a secondary metabolite of lichens, lichexanthone has also been isolated from several plants, listed here organized by
family Family (from la, familia) is a Social group, group of people related either by consanguinity (by recognized birth) or Affinity (law), affinity (by marriage or other relationship). The purpose of the family is to maintain the well-being of its ...
: *
Annonaceae The Annonaceae are a Family (biology), family of flowering plants consisting of trees, shrubs, or rarely lianas commonly known as the custard apple family or soursop family. With 108 accepted genera and about 2400 known species, it is the largest ...
: ''
Annona muricata Soursop (also called ''graviola, guyabano'', and in Hispanic America, ''guanábana'') is the fruit of ''Annona muricata'', a broadleaf, flowering, evergreen tree. It is native to the tropical regions of the Americas and the Caribbean and is wid ...
'', '' Guatteria blepharophylla'', '' Rollinia leptopetala'' *
Clusiaceae The Clusiaceae or Guttiferae Juss. (1789) (''nom. alt. et cons.'' = alternative and valid name) are a family of plants including 13 genera and ca 750 species. Several former members of Clusiacae are now placed in Calophyllaceae and Hypericaceae. ...
: '' Garcinia forbesii'' *
Euphorbiaceae Euphorbiaceae, the spurge family, is a large family of flowering plants. In English, they are also commonly called euphorbias, which is also the name of a genus in the family. Most spurges, such as ''Euphorbia paralias'', are herbs, but some, e ...
: '' Croton cuneatus'' *
Gentianaceae Gentianaceae is a family of flowering plants of 103 genera and about 1600 species. Etymology The family takes its name from the genus '' Gentiana'', named after the Illyrian king Gentius. Distribution Distribution is cosmopolitan. Characteri ...
: '' Anthocleista djalonensis'' *
Hypericaceae Hypericaceae is a plant family in the order Malpighiales, comprising six to nine genera and up to 700 species, and commonly known as the St. John's wort family. Members are found throughout the world apart from extremely cold or dry habitats. '' ...
: ''
Vismia baccifera ''Vismia baccifera'' is a tropical plant used by indigenous peoples in South America, in Colombian Amazon as well as Brazil, infused as traditional medicine. It has been demonstrated to have great antitumor capability in kidney and liver by indu ...
'' var. ''dealbata'' *
Meliaceae Meliaceae, the mahogany family, is a flowering plant family of mostly trees and shrubs (and a few herbaceous plants, mangroves) in the order Sapindales. They are characterised by alternate, usually pinnate leaves without stipules, and by syncarp ...
: ''
Trichilia rubescens ''Trichilia rubescens'' is a species of plant in the family Meliaceae Meliaceae, the mahogany family, is a flowering plant family of mostly trees and shrubs (and a few herbaceous plants, mangroves) in the order Sapindales. They are characteri ...
'' *
Melastomataceae Melastomataceae is a family of dicotyledonous flowering plants found mostly in the tropics (two-thirds of the genera are from the New World tropics) comprising c. 175 genera and c. 5115 known species. Melastomes are annual or perennial herbs, sh ...
: '' Henriettella fascicularis'' *
Olacaceae Olacaceae is a family of flowering plants in the order Santalales. They are woody plants, native throughout the tropical regions of the world. , the circumscription of the family varies; some sources maintain a broad family, others split it into ...
: ''
Minquartia guianensis ''Minquartia'' is a monotypic genus of flowering plants in the Olacaceae family containing the single species ''Minquartia guianensis'' (also called black manwood or huambula). It is found in Bolivia, Brazil, Colombia, Costa Rica, Ecuador, Frenc ...
'' *
Polygonaceae The Polygonaceae are a family of flowering plants known informally as the knotweed family or smartweed—buckwheat family in the United States. The name is based on the genus ''Polygonum'', and was first used by Antoine Laurent de Jussieu in 1789 ...
: '' Ruprechtia tangarana'' *
Rutaceae The Rutaceae is a family, commonly known as the rueRUTACEAE
in BoDD – Botanical Derm ...
: '' Clausena excavata'', '' Feroniella lucida'', '' Zanthoxylum microcarpum'', '' Z. valens,'' '' Z. setulosum'', '' Z. tetraspermum'' *
Sapindaceae The Sapindaceae are a family of flowering plants in the order Sapindales known as the soapberry family. It contains 138 genera and 1858 accepted species. Examples include horse chestnut, maples, ackee and lychee. The Sapindaceae occur in tempera ...
: '' Cupania cinerea'' Lichexanthone has also been reported to occur in the bark of '' Faramea cyanea'', although in that case it was suspected to have originated from a lichen growing on the bark. Additionally, two non-lichenised fungus species, ''
Penicillium persicinum ''Penicillium persicinum'' is a species of fungus in the genus ''Penicillium'' which was isolated from soil from the Qinghai Province in China. ''Penicillium persicinum'' produces griseofulvin, lichexanthone, roquefortine C, roquefortine D, patul ...
'' and '' Penicillium vulpinum'', can synthesize lichexanthone. Xanthones are known to have strong UV-absorbing properties. In experiments using laboratory-grown
mycobiont A lichen ( , ) is a composite organism that arises from algae or cyanobacteria living among filaments of multiple fungi species in a mutualistic relationship.Haematomma fluorescens'', the synthesis of lichexanthone was induced when young
mycelia Mycelium (plural mycelia) is a root-like structure of a fungus consisting of a mass of branching, thread-like hyphae. Fungal colonies composed of mycelium are found in and on soil and many other substrates. A typical single spore germinates in ...
were exposed to long-wavelength UV light (365 nm) for three to four hours every week over a time span of three to four months. In the natural lichen, the compound is present in both the outer cortical layer of the
thallus Thallus (plural: thalli), from Latinized Greek (), meaning "a green shoot" or "twig", is the vegetative tissue of some organisms in diverse groups such as algae, fungi, some liverworts, lichens, and the Myxogastria. Many of these organisms wer ...
and in the exciple (rim) of the
ascomata An ascocarp, or ascoma (), is the fruiting body ( sporocarp) of an ascomycete phylum fungus. It consists of very tightly interwoven hyphae and millions of embedded asci, each of which typically contains four to eight ascospores. Ascocarps are mo ...
. Lichexanthone may function as a light filter to protect the UV-sensitive algal layer in lichens from high-intensity
solar radiation Solar irradiance is the power per unit area (surface power density) received from the Sun in the form of electromagnetic radiation in the wavelength range of the measuring instrument. Solar irradiance is measured in watts per square metre (W/m ...
. The presence of the
photoprotective Photoprotection is the biochemical process that helps organisms cope with molecular damage caused by sunlight. Plants and other oxygenic phototrophs have developed a suite of photoprotective mechanisms to prevent photoinhibition and oxidative st ...
chemical in the cortex may allow them to survive in otherwise inhospitable habitats, like on exposed trees in tropical areas or high mountains. It has been pointed out, however, that lichexanthone is also found in lichens living in less stressed environments, and from species that are in families where cortical substances are rare. In some instances, similar or related species exist that lack cortical substances entirely, suggesting that the actual ecological function of lichexanthone is not fully understood.


Related compounds

Norlichexanthone (1,3,6-trihydroxy-8-methylxanthone) differs from lichexanthone in having hydroxy rather than methoxy groups at positions 3 and 6. In (1,6-dihydroxy-3-methoxy-8-methylxanthen-9-one), the methoxy at position 6 of lichexanthone is replaced with a hydroxy. Dozens of
chlorinated In chemistry, halogenation is a chemical reaction that entails the introduction of one or more halogens into a compound. Halide-containing compounds are pervasive, making this type of transformation important, e.g. in the production of polymers, ...
lichexanthone
derivatives The derivative of a function is the rate of change of the function's output relative to its input value. Derivative may also refer to: In mathematics and economics * Brzozowski derivative in the theory of formal languages * Formal derivative, an ...
have been reported, some isolated from a variety of lichen species, and some produced synthetically. These derivatives are variously mono-, bi-, or trichlorinated with the chlorines at positions 2, 4, 5, and 7. As of 2016, 62 molecules with the lichexanthone scaffold had been described, and another eight additional lichexanthone derivatives were considered "putative"–thought to exist in nature, but not yet discovered in lichens. The effects of chlorine
substituent A substituent is one or a group of atoms that replaces (one or more) atoms, thereby becoming a moiety in the resultant (new) molecule. (In organic chemistry and biochemistry, the terms ''substituent'' and ''functional group'', as well as ''side ...
s on some structural and electronic properties of lichexanthones have been studied with quantum mechanical theory, to better understand things such as intramolecular interactions,
aromaticity In chemistry, aromaticity is a chemical property of cyclic ( ring-shaped), ''typically'' planar (flat) molecular structures with pi bonds in resonance (those containing delocalized electrons) that gives increased stability compared to saturate ...
of the three rings, interactions between ionic and
halogen bond A halogen bond occurs when there is evidence of a net attractive interaction between an electrophilic region associated with a halogen atom in a molecular entity and a nucleophilic region in another, or the same, molecular entity. Like a hydrogen bo ...
s, and
binding energies In physics and chemistry, binding energy is the smallest amount of energy required to remove a particle from a system of particles or to disassemble a system of particles into individual parts. In the former meaning the term is predominantly use ...
of complexes formed between lichexanthone,
magnesium Magnesium is a chemical element with the symbol Mg and atomic number 12. It is a shiny gray metal having a low density, low melting point and high chemical reactivity. Like the other alkaline earth metals (group 2 of the periodic ta ...
ion (Mg+2) and NH3. A series of lichexanthone derivatives were synthesized and assessed for antimycobacterial activity against ''
Mycobacterium tuberculosis ''Mycobacterium tuberculosis'' (M. tb) is a species of pathogenic bacteria in the family Mycobacteriaceae and the causative agent of tuberculosis. First discovered in 1882 by Robert Koch, ''M. tuberculosis'' has an unusual, waxy coating on its c ...
''. These derivatives consisted of ω- bromo and ω-aminoalkoxylxanthones; lichexanthone and several derivatives were found to have weak antimycobacterial activity. According to the authors, this
chemometrics Chemometrics is the science of extracting information from chemical systems by data-driven means. Chemometrics is inherently interdisciplinary, using methods frequently employed in core data-analytic disciplines such as multivariate statistics, ap ...
approach was useful to correlate structural and chemical features with ''in vitro'' antimycobacterial activity among the group of ω-aminoalkoxylxanthones.


Eponyms

Some authors have explicitly named lichexanthone in the specific epithets of their published lichen species, thereby acknowledging the presence of this compound as an important
taxonomic Taxonomy is the practice and science of categorization or classification. A taxonomy (or taxonomical classification) is a scheme of classification, especially a hierarchical classification, in which things are organized into groups or types. ...
characteristic. These
eponym An eponym is a person, a place, or a thing after whom or which someone or something is, or is believed to be, named. The adjectives which are derived from the word eponym include ''eponymous'' and ''eponymic''. Usage of the word The term ''epon ...
s are listed here, followed by their author citation and year of publication. All of these species occur in Brazil: *'' Parmotrema lichexanthonicum'' *'' Lecanora lichexanthona'' *'' Crypthonia lichexanthonica'' *'' Cryptothecia lichexanthonica'' *'' Buellia lichexanthonica'' *'' Chiodecton lichexanthonicum'' *'' Enterographa lichexanthonica'' *'' Cladonia lichexanthonica'' *'' Pertusaria lichexanthofarinosa'' *'' Pertusaria lichexanthoimmersa'' *'' Pertusaria lichexanthoverrucosa'' *'' Caprettia lichexanthotricha'' *'' Lecanora lichexanthoxylina'' *'' Lepra lichexanthonorstictica'' – named for both lichexanthone and
norstictic acid Norstictic acid is a depsidone produced as a secondary metabolite Secondary metabolites, also called specialised metabolites, toxins, secondary products, or natural products, are organic compounds produced by any lifeform, e.g. bacteria, fun ...
In the case of '' Crypthonia'', '' Chiodecton'', ''
Cladonia ''Cladonia'' is a genus of moss-like lichens in the family Cladoniaceae. They are the primary food source for reindeer/caribou. ''Cladonia'' species are of economic importance to reindeer-herders, such as the Sami in Scandinavia or the Nenets ...
'', and '' Caprettia'', the listed species are the only members of those
genera Genus ( plural genera ) is a taxonomic rank used in the biological classification of living and fossil organisms as well as viruses. In the hierarchy of biological classification, genus comes above species and below family. In binomial nomenclat ...
that contain lichexanthone.


References

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Cambridge University Press Cambridge University Press is the university press of the University of Cambridge. Granted letters patent by Henry VIII of England, King Henry VIII in 1534, it is the oldest university press A university press is an academic publishing hou ...
, isbn=978-0-521-69216-8 , editor-link1=Thomas Hawkes Nash III , editor-last=Nash III , editor-first=Thomas H. , edition=2nd , location=New York , pages=118–119 , chapter=Biochemistry and secondary metabolites , author-link=John Alan Elix , doi=10.1017/CBO9780511790478.008
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Index Fungorum ''Index Fungorum'' is an international project to index all formal names ( scientific names) in the fungus kingdom. the project is based at the Royal Botanic Gardens, Kew, one of three partners along with Landcare Research and the Institute of M ...
, access-date=4 February 2022
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