Eukaryotes
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Eukaryotes
Eukaryotes () are organisms whose cells have a nucleus. All animals, plants, fungi, and many unicellular organisms, are Eukaryotes. They belong to the group of organisms Eukaryota or Eukarya, which is one of the three domains of life. Bacteria and Archaea (both prokaryotes) make up the other two domains. The eukaryotes are usually now regarded as having emerged in the Archaea or as a sister of the Asgard archaea. This implies that there are only two domains of life, Bacteria and Archaea, with eukaryotes incorporated among archaea. Eukaryotes represent a small minority of the number of organisms, but, due to their generally much larger size, their collective global biomass is estimated to be about equal to that of prokaryotes. Eukaryotes emerged approximately 2.3–1.8 billion years ago, during the Proterozoic eon, likely as flagellated phagotrophs. Their name comes from the Greek εὖ (''eu'', "well" or "good") and κάρυον (''karyon'', "nut" or "kernel"). Eu ...
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Archaeplastida
The Archaeplastida (or kingdom Plantae ''sensu lato'' "in a broad sense"; pronounced /ɑːrkɪ'plastɪdə/) are a major group of eukaryotes, comprising the photoautotrophic red algae (Rhodophyta), green algae, land plants, and the minor group glaucophytes. It also includes the non-photosynthetic lineage Rhodelphidia, a predatorial (eukaryotrophic) flagellate that is sister to the Rhodophyta, and probably the microscopic picozoans. The Archaeplastida have chloroplasts that are surrounded by two membranes, suggesting that they were acquired directly through a single endosymbiosis event by feeding on a cyanobacterium. All other groups which have chloroplasts, besides the amoeboid genus ''Paulinella'', have chloroplasts surrounded by three or four membranes, suggesting they were acquired secondarily from red or green algae. Unlike red and green algae, glaucophytes have never been involved in secondary endosymbiosis events. The cells of the Archaeplastida typically lack centriol ...
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Discoba
Excavata is a major supergroup of unicellular organisms belonging to the domain Eukaryota. It was first suggested by Simpson and Patterson in 1999 and introduced by Thomas Cavalier-Smith in 2002 as a formal taxon. It contains a variety of free-living and symbiotic forms, and also includes some important parasites of humans, including '' Giardia'' and ''Trichomonas''. Excavates were formerly considered to be included in the now obsolete Protista kingdom. They are classified based on their flagellar structures, and they are considered to be the most basal flagellate lineage. Phylogenomic analyses split the members of Excavata into three different and not all closely related groups: Discobids, Metamonads and Malawimonads. Except for Euglenozoa, they are all non-photosynthetic. Characteristics Most excavates are unicellular, heterotrophic flagellates. Only the Euglenozoa are photosynthetic. In some (particularly anaerobic intestinal parasites), the mitochondria have been gre ...
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Cryptista
Cryptista is a clade of algae-like eukaryotes. It is most likely related to Archaeplastida which includes plants and many algae, within the larger group Diaphoretickes. Although it has sometimes placed along with Haptista in the group Hacrobia, within the kingdom Chromista, most recent studies have found that Hacrobia is not a clade. For example, in 2016, a broad phylogenomic study found that cryptists fall within the group Archaeplastida, while haptophytes are closely related to the SAR supergroup. Taxonomy Based on studies done by Cavalier-Smith, Chao & Lewis 2015 *''Corbihelia'' ** Phylum Microheliellida Tedersoo 2017 [Endohelia Cavalier-Smith 2015] *** Class Endohelea Cavalier-Smith 2012 * Clade Cryptista s.s. ** Phylum Palpitophyta Tedersoo 2017 *** Class Palpitea Cavalier-Smith 2012 ** Clade Rollomonadia Cavalier-Smith 2013 stat. nov. *** Phylum Kathablepharidophyta Okamoto & Inouye 2005 [Leucocrypta Cavalier-Smith 2015] **** Class Leucocryptea Cavalier-Smith 2004 [Kathab ...
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Diphoda
A bikont ("two flagella") is any of the eukaryotic organisms classified in the group Bikonta. Many single-celled members of the group, and the presumed ancestor, have two flagella. Enzymes Another shared trait of bikonts is the fusion of two genes into a single unit: the genes for thymidylate synthase (TS) and dihydrofolate reductase (DHFR) encode a single protein with two functions. The genes are separately translated in unikonts. Relationships Some research suggests that a unikont (a eukaryotic cell with a single flagellum) was the ancestor of opisthokonts (Animals, Fungi, and related forms) and Amoebozoa, and a bikont was the ancestor of Archaeplastida (Plants and relatives), Excavata, Rhizaria, and Chromalveolata. Cavalier-Smith has suggested that Apusozoa, which are typically considered ''incertae sedis'', are in fact bikonts. Relationships within the bikonts are not yet clear. Cavalier-Smith has grouped the Excavata and Rhizaria into the Cabozoa and the Archaeplasti ...
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Ancyromonadida
Ancyromonadida or Planomonadida is a small group of biflagellated protists found in the soil and in aquatic habitats, where they feed on bacteria.Cavalier-Smith, T. (2013)Early evolution of eukaryote feeding modes, cell structural diversity, and classification of the protozoan phyla Loukozoa, Sulcozoa, and Choanozoa European journal of protistology, 49(2), 115-178. Includes freshwater or marine organisms, benthic, dorsoventrally compressed and with two unequal flagellae, each emerging from a separate pocket. The apical anterior flagellum can be very thin or end in the cell membrane, while the posterior flagellum is long and is inserted ventrally or laterally. The cell membrane is supported by a thin single layer teak and the mitochondrial crests are discoidal / flat. The group's placement is doubtful, as it seems to fall outside the five supergroups of eukaryotes. Cavalier-Smith considers that they constitute a basal group to Amoebozoa and Opisthokonta and places it together w ...
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Hemimastigophora
Hemimastigophora is a group of single-celled eukaryotic organisms with a single family, Spironemidae, first identified in 1988. Over the next 30 years, different authors proposed placing these organisms in various branches of the eukaryotes. In 2018 Lax ''et al''. reported the first genetic information for Spironemidae, and suggest that they are from an ancient lineage of eukaryotes which constitute a separate clade from all other eukaryotic kingdoms. It is potentially related to the Telonemia. History of classification Hemimastigophora was established in 1988 by Foissner ''et al''., as a new phylum with a single family, Spironemidae. Its placement on the eukaryote tree of life was unclear, but the authors suggested that the structure of its pellicle and cell nucleus indicated a close relationship with Euglenozoa. For 30 years after the description of the group, no genetic information was available. During that time, researchers proposed that it should be classified ...
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Supergroup (biology)
A supergroup, in evolutionary biology, is a large group of organisms that share one common ancestor and have important defining characteristics. It is an informal, mostly arbitrary rank in biological taxonomy that is often greater than phylum or kingdom, although some supergroups are also treated as phyla. Eukaryotic supergroups Since the decade of 2000's, the eukaryotic tree of life (abbreviated as eToL) has been divided into 5–8 major groupings called 'supergroups'. These groupings were established after the idea that only monophyletic groups should be accepted as ranks, as an alternative to the use of paraphyletic kingdom Protista. In the early days of the eToL six traditional supergroups were considered: Amoebozoa, Opisthokonta, "Excavata", Archaeplastida, "Chromalveolata" and Rhizaria. Since then, the eToL has been rearranged profoundly, and most of these groups were found as paraphyletic or lacked defining morphological characteristics that unite their members, which mak ...
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Stramenopiles
Stramenopile is a clade of organisms distinguished by the presence of stiff tripartite external hairs. In most species, the hairs are attached to flagella, in some they are attached to other areas of the cellular surface, and in some they have been secondarily lost (in which case relatedness to stramenopile ancestors is evident from other shared cytological features or from genetic similarity). Stramenopiles represent one of the three major clades in the SAR supergroup, along with Alveolata and Rhizaria. Members of the clade are referred to as 'stramenopiles'. Stramenopiles are eukaryotes; since they are neither fungi, animals, nor plants, they are classified as protists. Most stramenopiles are single-celled, but some are multicellular algae including some brown algae. The group includes a variety of algal protists, heterotrophic flagellates, opalines and closely related proteromonad flagellates (all endobionts in other organisms); the actinophryid heliozoa, and oomycetes. T ...
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Rhizaria
The Rhizaria are an ill-defined but species-rich supergroup of mostly unicellular eukaryotes. Except for the Chlorarachniophytes and three species in the genus Paulinella in the phylum Cercozoa, they are all non-photosynthethic, but many foraminifera and radiolaria have a symbiotic relationship with unicellular algae. A multicellular form, ''Guttulinopsis vulgaris'', a cellular slime mold, has also been described. This group was used by Cavalier-Smith in 2002, although the term "Rhizaria" had been long used for clades within the currently recognized taxon. Being described mainly from rDNA sequences, they vary considerably in form, having no clear morphological distinctive characters (synapomorphies), but for the most part they are amoeboids with filose, reticulose, or microtubule-supported pseudopods. In the absence of an apomorphy, the group is ill-defined, and its composition has been very fluid. Some Rhizaria possess mineral exoskeleton (thecae or loricas), which is in differ ...
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Provora
Provora is a proposed supergroup of eukaryotes made up of predatory microbes, "devouring voracious protists". It was reported that ten strains were isolated and cultured in 2022. They are predators of other microorganisms. Their discovery was very delayed, compared to other microorganisms in their environments, due to their rarity. Their 18S is very different from that of other eukaryotes, thus they were taxonomically placed in a separate supergroup. Phylogeny External relationships The supergroup Provora is composed of eukaryotic strains that form an ancient lineage within the clade Diaphoretickes. Phylogenetic analyses have recovered the following cladogram A cladogram (from Greek ''clados'' "branch" and ''gramma'' "character") is a diagram used in cladistics to show relations among organisms. A cladogram is not, however, an evolutionary tree because it does not show how ancestors are related to d ... shape: Internal relationships The phylogenetic relationships between th ...
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Haptista
Haptista is a proposed group of protists made up of centrohelids and haptophytes. Phylogenomic studies indicate that Haptista, together with ''Ancoracysta twista'', forms a sister clade to the SAR+Telonemia supergroup, but it may also be sister to the Cryptista (+Archaeplastida). It is thus one of the earliest diverging Diaphoretickes. Taxonomy Based on studies done by Cavalier-Smith, Chao & Lewis 2015 and Ruggiero et al. 2015. * Subphylum Centroheliozoa Cushman & Jarvis 1929 sensu Durrschmidt & Patterson 1987 eliozoa Haeckel 1862 stat. n. Margulis 1974 em. Cavalier-Smith 2003** Class Centrohelea Kuhn 1926 stat. n. Cavalier-Smith 1993 entroplastiales; Centrohelina Hartmann 1913; Centroplasthelida Febvre-Chevalier 1984* Subphylum Haptophytina Cavalier-Smith 2015 (Haptophyta Hibberd 1976 sensu Ruggerio et al. 2015) ** Clade Rappemonada Kim et al. 2011 *** Class Rappephyceae Rappephyceae, or Rappemonads, are a small family of protists first described in 2011, of uncertain phylog ...
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Orosirian
The Orosirian Period (; grc, ὀροσειρά, translit=oroseirá, meaning "mountain range") is the third geologic period in the Paleoproterozoic era (geology), Era and lasted from annum, Mya to Mya (million years ago). Instead of being based on stratigraphy, these dates are defined Absolute dating, chronometrically. The later half of the period was an episode of intensive orogeny on virtually all continents. Two of the largest known impact events on Earth occurred during the Orosirian. Early in the period, 2023 Mya, a large asteroid collision created the Vredefort impact structure. The event that created the Sudbury Basin structure occurred near the end of the period, 1850 Mya. For the time period from about 2060 to 1780 Mya, an alternative period based on stratigraphy rather than chronometry, named the Columbian, was suggested in the geological timescale review 2012 edited by Gradstein et al., but , this has not yet been officially adopted by the IUGS. Paleogeography T ...
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