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Chlamydiota
The Chlamydiota (synonym Chlamydiae) are a bacterial phylum and class whose members are remarkably diverse, including pathogens of humans and animals, symbionts of ubiquitous protozoa, and marine sediment forms not yet well understood. All of the Chlamydiota that humans have known about for many decades are obligate intracellular bacteria; in 2020 many additional Chlamydiota were discovered in ocean-floor environments, and it is not yet known whether they all have hosts. Historically it was believed that all Chlamydiota had a peptidoglycan-free cell wall, but studies in the 2010s demonstrated a detectable presence of peptidoglycan, as well as other important proteins. Among the Chlamydiota, all of the ones long known to science grow only by infecting eukaryotic host cells. They are as small as or smaller than many viruses. They are ovoid in shape and stain Gram-negative. They are dependent on replication inside the host cells; thus, some species are termed obligate intracellula ...
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Simkaniaceae
Simkaniaceae is a family of bacteria in the order Chlamydiales, class Chlamydiia, phylum Chlamydiota, domain Bacteria. Species in this family have a chlamydia-like cycle of replication and their ribosomal RNA genes are 80–90% identical to ribosomal genes in the Chlamydiaceae. The Simkaniaceae are not recognized by monoclonal antibodies that are specific for Chlamydiaceae lipopolysaccharide. The family Simkaniaceae currently includes two Genus, genera: ''Simkania'' and ''Fritschea''. The type species is ''Simkania negevensis'', and its natural host is not known. It is readily grown in monolayers of eukaryotic Vero cells. Serological evidence and PCR indicate that ''S. negevensis'' is widespread among humans. Two ''Fritschea'' species have been identified in insects. These are candidatus species because they only grow in insect bacteriocytes and have not been cultured in vitro. Whiteflies are the host of Candidatus ''Fritschea bemisiae'' (strain Falk). Scale insects are the ho ...
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Chlamydiaceae
The Chlamydiaceae are a family of gram-negative bacteria that belongs to the phylum Chlamydiota, order Chlamydiales. Chlamydiaceae species express the family-specific lipopolysaccharide epitope αKdo-(2→8)-αKdo-(2→4)-αKdo (previously called the genus-specific epitope). Chlamydiaceae ribosomal RNA genes all have at least 90% DNA sequence identity. Chlamydiaceae species have varying inclusion morphology, varying extrachromosomal plasmid content, and varying sulfadiazine resistance. The family Chlamydiaceae currently includes one genus and one candidate genus: ''Chlamydia'' and ''candidatus Clavochlamydia''. ''Chlamydia'' Three species belong to ''Chlamydia'': ''C. trachomatis'', ''C. muridarum'', and ''C. suis''. ''C. trachomatis'' has been found only in humans, ''C. muridarum'' in hamsters and mice (family Muridae), and ''C. suis'' in swine. ''Chlamydia'' species produce a small amount of detectable glycogen and have two ribosomal operons. ''Chlamydia trachomat ...
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Chlamydiales
The bacterial order Chlamydiales includes only obligately intracellular bacteria that have a chlamydia-like developmental cycle of replication and at least 80% 16S rRNA or 23S rRNA gene sequence identity with other members of Chlamydiales. Chlamydiales live in animals, insects, and protozoa. Currently, the order Chlamydiales includes the families Chlamydiaceae, Simkaniaceae, and Waddliaceae, which have Gram-negative extracellular infectious bodies (EBs), and Parachlamydiaceae, which has variable Gram staining of EBs. The family Rhabdochlamydiaceae has been proposed. Phylogeny Taxonomy The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI) * Family " Actinochlamydiaceae" Steigen et al. 2013 ** ?"''Ca.'' Actinochlamydia" Steigen et al. 2013 * Family " Clavichlamydiaceae" Horn 2011 ** "''Ca.'' Clavichlamydia" corrig. Karlsen et al. 2008 * Family " Criblamydiaceae" ...
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Waddliaceae
''Waddlia'' is a genus of bacteria in its own family, Waddliaceae. Species in this genus have a ''Chlamydia''-like cycle of replication and their ribosomal RNA genes are 80–90% identical to ribosomal genes in the Chlamydiaceae. The type species is ''Waddlia chondrophila'' strain WSU 86-1044T, which was isolated from the tissues of a first-trimester aborted bovine fetus. Isolated in 1986, this species was originally characterized as a ''Rickettsia''. DNA sequencing of the ribosomal genes corrected the characterization. Another ''W. chondrophila'' strain, 2032/99, was found along with ''Neospora caninum'' in a septic stillborn calf. ''Waddlia chondrophila'' may be linked to miscarriages in pregnant women. A study found ''Waddlia chondrophila'' present in the placenta and vagina of 32 women, 10 of which who had miscarriages. It is hypothesized that the bacterial grows in placental cells, damaging the placenta. The species ''Waddlia malaysiensis'' G817 has been proposed. ''W ...
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Rhabdochlamydiaceae
''Candidatus'' Rhabdochlamydia is a genus of intracellular bacteria and the sole genus in the family ''Candidatus'' Rhabdochlamydiaceae. As a ''Candidatus'' taxon, no-one has yet managed to culture them ''in vitro'' for deposition in a culture collection. Two ''Rhabdochlamydia'' species have been characterized and validly proposed. Their ribosomal RNA genes are 96.3% identical. These gene sequences are 82%–87% identical to those of most Chlamydiales. These data and analysis of ''Rhabdochlamydia'' morphology indicates that these species belong to the bacterial order Chlamydiales. Species The genus consists of the following two valid species: * ''Candidatus'' Rhabdochlamydia crassificans Kostanjšek et al. 2004 – detected in the cockroach ''Blatta orientalis'' * ''Candidatus'' Rhabdochlamydia porcellionis Corsaro et al. 2006 – detected in hepatopancreas of the woodlouse ''Porcellio scaber'' See also * List of bacteria genera This article lists the genera of the bacteria ...
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Phylum (biology)
In biology, a phylum (; plural: phyla) is a level of classification or taxonomic rank below kingdom and above class. Traditionally, in botany the term division has been used instead of phylum, although the International Code of Nomenclature for algae, fungi, and plants accepts the terms as equivalent. Depending on definitions, the animal kingdom Animalia contains about 31 phyla, the plant kingdom Plantae contains about 14 phyla, and the fungus kingdom Fungi contains about 8 phyla. Current research in phylogenetics is uncovering the relationships between phyla, which are contained in larger clades, like Ecdysozoa and Embryophyta. General description The term phylum was coined in 1866 by Ernst Haeckel from the Greek (, "race, stock"), related to (, "tribe, clan"). Haeckel noted that species constantly evolved into new species that seemed to retain few consistent features among themselves and therefore few features that distinguished them as a group ("a self-contained uni ...
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Bacterial
Bacteria (; singular: bacterium) are ubiquitous, mostly free-living organisms often consisting of one biological cell. They constitute a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria were among the first life forms to appear on Earth, and are present in most of its habitats. Bacteria inhabit soil, water, acidic hot springs, radioactive waste, and the deep biosphere of Earth's crust. Bacteria are vital in many stages of the nutrient cycle by recycling nutrients such as the fixation of nitrogen from the atmosphere. The nutrient cycle includes the decomposition of dead bodies; bacteria are responsible for the putrefaction stage in this process. In the biological communities surrounding hydrothermal vents and cold seeps, extremophile bacteria provide the nutrients needed to sustain life by converting dissolved compounds, such as hydrogen sulphide and methane, to energy. Bacteria also live in symbiotic and parasitic relationships ...
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Chlamydia
Chlamydia, or more specifically a chlamydia infection, is a sexually transmitted infection caused by the bacterium ''Chlamydia trachomatis''. Most people who are infected have no symptoms. When symptoms do appear they may occur only several weeks after infection; the incubation period between exposure and being able to infect others is thought to be on the order of two to six weeks. Symptoms in women may include vaginal discharge or burning with urination. Symptoms in men may include discharge from the penis, burning with urination, or pain and swelling of one or both testicles. The infection can spread to the upper genital tract in women, causing pelvic inflammatory disease, which may result in future infertility or ectopic pregnancy. Chlamydia infections can occur in other areas besides the genitals, including the anus, eyes, throat, and lymph nodes. Repeated chlamydia infections of the eyes that go without treatment can result in trachoma, a common cause of blindness in th ...
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Parachlamydiaceae
Parachlamydiaceae is a family of bacteria in the order Chlamydiales. Species in this family have a ''Chlamydia''–like cycle of replication and their ribosomal RNA genes are 80–90% identical to ribosomal genes in the Chlamydiaceae. The Parachlamydiaceae naturally infect amoebae and can be grown in cultured Vero cells. The Parachlamydiaceae are not recognized by monoclonal antibodies that detect Chlamydiaceae lipopolysaccharide. Phylogeny The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI) Unassigned species: * "''Ca.'' Mesochlamydia elodeae" Corsaro et al. 2012 * "''Ca.'' Metachlamydia lacustris" Corsaro et al. 2010 Isolated Endosymbionts include: *Hall's coccus *P9 *UV-7 *endosymbiont of ''Acanthamoeba'' sp. TUME1 *endosymbiont of ''Acanthamoeba'' sp. UWC22 *endosymbiont of ''Acanthamoeba'' sp. UWE1 Uncultured lineages include: *''Neochlamydia'' turtle t ...
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Chlamydia Pneumoniae
''Chlamydia pneumoniae'' is a species of ''Chlamydia'', an obligate intracellular bacterium that infects humans and is a major cause of pneumonia. It was known as the Taiwan acute respiratory agent (TWAR) from the names of the two original isolates – Taiwan (TW-183) and an acute respiratory isolate designated AR-39. Briefly, it was known as ''Chlamydophila pneumoniae,'' and that name is used as an alternate in some sources. In some cases, to avoid confusion, both names are given. ''Chlamydia pneumoniae'' has a complex life cycle and must infect another cell to reproduce; thus, it is classified as an obligate intracellular pathogen. The full genome sequence for ''C. pneumoniae'' was published in 1999. It also infects and causes disease in koalas, emerald tree boas (''Corallus caninus''), iguanas, chameleons, frogs, and turtles. The first known case of infection with ''C. pneumoniae'' was a case of conjunctivitis in Taiwan in 1950. There are no known cases of ''C. pneumon ...
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Chlamydia Trachomatis
''Chlamydia trachomatis'' (), commonly known as chlamydia, is a bacterium that causes chlamydia, which can manifest in various ways, including: trachoma, lymphogranuloma venereum, nongonococcal urethritis, cervicitis, salpingitis, pelvic inflammatory disease. ''C. trachomatis'' is the most common infectious cause of blindness and the most common sexually transmitted bacterium. Different types of ''C. trachomatis'' cause different diseases. The most common strains cause disease in the genital tract, while other strains cause disease in the eye or lymph nodes. Like other ''Chlamydia'' species, the ''C. trachomatis'' life cycle consists of two morphologically distinct life stages: elementary bodies and reticulate bodies. Elementary bodies are spore-like and infectious, whereas reticulate bodies are in the replicative stage and are seen only within host cells. Description ''Chlamydia trachomatis'' is a gram-negative bacterium that can replicate only within a host cell. Over the cour ...
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Gram-negative
Gram-negative bacteria are bacteria that do not retain the crystal violet stain used in the Gram staining method of bacterial differentiation. They are characterized by their cell envelopes, which are composed of a thin peptidoglycan cell wall sandwiched between an inner cytoplasmic cell membrane and a bacterial outer membrane. Gram-negative bacteria are found in virtually all environments on Earth that support life. The gram-negative bacteria include the model organism ''Escherichia coli'', as well as many pathogenic bacteria, such as ''Pseudomonas aeruginosa'', ''Chlamydia trachomatis'', and ''Yersinia pestis''. They are a significant medical challenge as their outer membrane protects them from many antibiotics (including penicillin), detergents that would normally damage the inner cell membrane, and lysozyme, an antimicrobial enzyme produced by animals that forms part of the innate immune system. Additionally, the outer leaflet of this membrane comprises a complex lipo ...
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