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Methanotroph
Methanotrophs (sometimes called methanophiles) are prokaryotes that metabolize methane as their source of carbon and chemical energy. They are bacteria or archaea, can grow aerobically or anaerobically, and require single-carbon compounds to survive. Methanotrophs are especially common in or near environments where methane is produced, although some methanotrophs can oxidize atmospheric methane. Their habitats include wetlands, soils, marshes, rice paddies, landfills, aquatic systems (lakes, oceans, streams) and more. They are of special interest to researchers studying global warming, as they play a significant role in the global methane budget, by reducing the amount of methane emitted to the atmosphere. Methanotrophy is a special case of methylotrophy, using single-carbon compounds that are more reduced than carbon dioxide. Some methylotrophs, however, can also make use of multi-carbon compounds; this differentiates them from methanotrophs, which are usually fastidious metha ...
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Atmospheric Methane
Atmospheric methane is the methane present in Earth's atmosphere. Atmospheric methane concentrations are of interest because it is one of the most potent greenhouse gases in Earth's atmosphere. Atmospheric methane is rising. The 20-year global warming potential of methane is 84. See Table 8.7. That is, over a 20-year period, it traps 84 times more heat per mass unit than carbon dioxide (CO2) and 105 times the effect when accounting for aerosol interactions. Global methane concentrations rose from 722 parts per billion (ppb) in pre-industrial times to 1895 ppb by 2021, an increase by a factor of 2.6 and the highest value in at least 800,000 years. Its concentration is higher in the Northern Hemisphere since most sources (both natural and human) are located on land and the Northern Hemisphere has more land mass. The concentrations vary seasonally, with, for example, a minimum in the northern tropics during April−May mainly due to removal by the hydroxyl radical. It rema ...
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Methylocella Silvestris
''Methylocella silvestris'' is a bacterium from the genus ''Methylocella spp'' which are found in many acidic soils and wetlands. Historically, ''Methylocella silvestris'' was originally isolated from acidic forest soils in Germany, and it is described as Gram-negative, aerobic, non-pigmented, non-motile, rod-shaped and methane-oxidizing facultative methanotroph. As an aerobic methanotrophic bacteria, ''Methylocella spp'' use methane (CH4), and methanol as their main carbon and energy source, as well as multi compounds acetate, pyruvate, succinate, malate, and ethanol. They were known to survive in the cold temperature from 4° to 30° degree of Celsius with the optimum at around 15° to 25 °C, but no more than 36 °C. They grow better in the pH scale between 4.5 to 7.0. It lacks intracytoplasmic membranes common to all methane-oxidizing bacteria except ''Methylocella'', but contain a vesicular membrane system connected to the cytoplasmic membrane The cell membran ...
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Methylotrophy
Methylotrophs are a diverse group of microorganisms that can use reduced one-carbon compounds, such as methanol or methane, as the carbon source for their growth; and multi-carbon compounds that contain no carbon-carbon bonds, such as dimethyl ether and dimethylamine. This group of microorganisms also includes those capable of assimilating reduced one-carbon compounds by way of carbon dioxide using the ribulose bisphosphate pathway. These organisms should not be confused with methanogens which on the contrary produce methane as a by-product from various one-carbon compounds such as carbon dioxide. Some methylotrophs can degrade the greenhouse gas methane, and in this case they are called methanotrophs. The abundance, purity, and low price of methanol compared to commonly used sugars make methylotrophs competent organisms for production of amino acids, vitamins, recombinant proteins, single-cell proteins, co-enzymes and cytochromes. Metabolism The key intermediate in meth ...
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Methylocystaceae
The Methylocystaceae are a family of bacteria that are capable of obtaining carbon and energy from methane. Such bacteria are called methanotrophs, and in particular the Methylocystaceae comprise the type II methanotrophs, which are structurally and biochemically distinct from the Methylococcaceae or type I methanotrophs. In this family methane is oxidized to form formaldehyde, which is assimilated by the serine pathway. This involves combining formaldehyde and glycine to form serine, which may be converted into glyceraldehyde and thus into other organic molecules. They can also fix nitrogen, like many other members of the order Hyphomicrobiales The ''Hyphomicrobiales'' are an order of Gram-negative Alphaproteobacteria. The rhizobia, which fix nitrogen and are symbiotic with plant roots, appear in several different families. The four families ''Nitrobacteraceae'', ''Hyphomicrobiaceae' .... The cells contained paired internal membranes which are arranged towards their peri ...
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Methane
Methane ( , ) is a chemical compound with the chemical formula (one carbon atom bonded to four hydrogen atoms). It is a group-14 hydride, the simplest alkane, and the main constituent of natural gas. The relative abundance of methane on Earth makes it an economically attractive fuel, although capturing and storing it poses technical challenges due to its gaseous state under normal conditions for temperature and pressure. Naturally occurring methane is found both below ground and under the seafloor and is formed by both geological and biological processes. The largest reservoir of methane is under the seafloor in the form of methane clathrates. When methane reaches the surface and the atmosphere, it is known as atmospheric methane. The Earth's atmospheric methane concentration has increased by about 150% since 1750, and it accounts for 20% of the total radiative forcing from all of the long-lived and globally mixed greenhouse gases. It has also been detected on other plane ...
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Methylococcaceae
The Methylococcaceae are a family of bacteria that obtain their carbon and energy from methane, called methanotrophs.. They comprise the type I methanotrophs, in contrast to the Methylocystaceae or type II methanotrophs. They belong to Gammaproteobacteria, and are typically given their own order. The Methylococcaceae have internal membranes in the form of flattened discs, perpendicular to the cell wall. Methane is oxidized to give formaldehyde, which is fixed by a process called the ribulose monophosphate (RuMP) cycle. Here formaldehyde is combined with sugar ribulose, producing hexulose. This, in turn, is broken down to produce glyceraldehyde, which is used to produce new ribulose and other organic compounds. Catabolism does not involve a complete citric acid cycle The citric acid cycle (CAC)—also known as the Krebs cycle or the TCA cycle (tricarboxylic acid cycle)—is a series of chemical reactions to release stored energy through the oxidation of acetyl-CoA deri ...
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Methylocapsa Aurea
''Methylocapsa aurea'' is a Gram-negative, aerobic, non-motile bacteria from the genus of Methylocapsa which was isolated from forest soil in Germany. It is a facultative methanotroph Methanotrophs (sometimes called methanophiles) are prokaryotes that metabolize methane as their source of carbon and chemical energy. They are bacteria or archaea, can grow aerobically or anaerobically, and require single-carbon compounds to s .... References External linksType strain of ''Methylocapsa aurea'' at Bac''Dive'' - the Bacterial Diversity Metadatabase Beijerinckiaceae Bacteria described in 2010 {{Hyphomicrobiales-stub ...
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Beijerinckiaceae
The Beijerinckiaceae are a family of Hyphomicrobiales named after the Dutch microbiologist Martinus Willem Beijerinck. ''Beijerinckia'' is a genus of free-living aerobic nitrogen-fixing bacteria. Acidotolerant ''Beijerinckiaceae'' has been shown to be the main bacterial methanol sink in a deciduous forest soil and highlights their importance for the conversion of methanol in forest soils. Together with ''Methylocystaceae'' they are alphaproteobacterial methanotroph Methanotrophs (sometimes called methanophiles) are prokaryotes that metabolize methane as their source of carbon and chemical energy. They are bacteria or archaea, can grow aerobically or anaerobically, and require single-carbon compounds to s ...s. References Hyphomicrobiales Martinus Beijerinck {{Hyphomicrobiales-stub ...
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Bacteria
Bacteria (; singular: bacterium) are ubiquitous, mostly free-living organisms often consisting of one biological cell. They constitute a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria were among the first life forms to appear on Earth, and are present in most of its habitats. Bacteria inhabit soil, water, acidic hot springs, radioactive waste, and the deep biosphere of Earth's crust. Bacteria are vital in many stages of the nutrient cycle by recycling nutrients such as the fixation of nitrogen from the atmosphere. The nutrient cycle includes the decomposition of dead bodies; bacteria are responsible for the putrefaction stage in this process. In the biological communities surrounding hydrothermal vents and cold seeps, extremophile bacteria provide the nutrients needed to sustain life by converting dissolved compounds, such as hydrogen sulphide and methane, to energy. Bacteria also live in symbiotic and parasitic relationsh ...
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Verrucomicrobiota
Verrucomicrobiota is a phylum of Gram-negative bacteria that contains only a few described species. The species identified have been isolated from fresh water, marine and soil environments and human faeces. A number of as-yet uncultivated species have been identified in association with eukaryotic hosts including extrusive explosive ectosymbionts of protists and endosymbionts of nematodes residing in their gametes. Verrucomicrobiota are abundant within the environment, though relatively inactive. This phylum is considered to have two sister phyla: Chlamydiota (formerly Chlamydiae) and Lentisphaerota (formerly Lentisphaerae) within the PVC superphylum. The Verrucomicrobiota phylum can be distinguished from neighbouring phyla within the PVC group by the presence of several conserved signature indels (CSIs). These CSIs represent unique, synapomorphic characteristics that suggest common ancestry within Verrucomicrobiota and an independent lineage amidst other bacteria. CSIs have a ...
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Alphaproteobacteria
Alphaproteobacteria is a class of bacteria in the phylum Pseudomonadota (formerly Proteobacteria). The Magnetococcales and Mariprofundales are considered basal or sister to the Alphaproteobacteria. The Alphaproteobacteria are highly diverse and possess few commonalities, but nevertheless share a common ancestor. Like all ''Proteobacteria'', its members are gram-negative and some of its intracellular parasitic members lack peptidoglycan and are consequently gram variable. Characteristics The Alphaproteobacteria are a diverse taxon and comprises several phototrophic genera, several genera metabolising C1-compounds (''e.g.'', ''Methylobacterium'' spp.), symbionts of plants (''e.g.'', ''Rhizobium'' spp.), endosymbionts of arthropods (''Wolbachia'') and intracellular pathogens (''e.g. Rickettsia''). Moreover, the class is sister to the protomitochondrion, the bacterium that was engulfed by the eukaryotic ancestor and gave rise to the mitochondria, which are organelles in eukaryotic ce ...
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Redox
Redox (reduction–oxidation, , ) is a type of chemical reaction in which the oxidation states of substrate (chemistry), substrate change. Oxidation is the loss of Electron, electrons or an increase in the oxidation state, while reduction is the gain of electrons or a decrease in the oxidation state. There are two classes of redox reactions: * ''Electron-transfer'' – Only one (usually) electron flows from the reducing agent to the oxidant. This type of redox reaction is often discussed in terms of redox couples and electrode potentials. * ''Atom transfer'' – An atom transfers from one substrate to another. For example, in the rusting of iron, the oxidation state of iron atoms increases as the iron converts to an oxide, and simultaneously the oxidation state of oxygen decreases as it accepts electrons released by the iron. Although oxidation reactions are commonly associated with the formation of oxides, other chemical species can serve the same function. In hydrogen ...
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