Enterorhabdus
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Enterorhabdus
''Adlercreutzia'' is a genus in the phylum Actinomycetota (Bacteria). Etymology The generic name derives from H. Adlercreutz, a professor at the University of Helsinki in Finland, for his contributions to research on the effects of phytoestrogens on human health. Species The genus contains the following species: * ''Adlercreutzia caecicola ''(Clavel et al. 2013) Nouioui et al. 2018 * ''Adlercreutzia caecimuris'' (Clavel ''et al''. 2010) Nouioui ''et al''. 2018 * ''Adlercreutzia equolifaciens'' Maruo ''et al''. 2008 * ''Adlercreutzia hattorii'' Sakamoto et al. 2021 * ''Adlercreutzia mucosicola'' (Clavel ''et al''. 2009) Nouioui ''et al''. 2018 * ''Adlercreutzia muris'' (Lagkouvardos ''et al''. 2016) Nouioui ''et al''. 2018 * ''Adlercreutzia rubneri'' Stoll et al. 2021 Taxonomy In 2018, Nouioui ''et al.'' proposed merging the genera ''Asaccharobacter, Enterorhabdus'' and ''Parvibacter'' within the genus ''Aldercreutzia'' based on observed clustering of these genera within phyl ...
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Adlercreutzia Mucosicola
''Adlercreutzia'' is a genus in the phylum Actinomycetota (Bacteria). Etymology The generic name derives from H. Adlercreutz, a professor at the University of Helsinki in Finland, for his contributions to research on the effects of phytoestrogens on human health. Species The genus contains the following species: * ''Adlercreutzia caecicola ''(Clavel et al. 2013) Nouioui et al. 2018 * ''Adlercreutzia caecimuris'' (Clavel ''et al''. 2010) Nouioui ''et al''. 2018 * ''Adlercreutzia equolifaciens'' Maruo ''et al''. 2008 * ''Adlercreutzia hattorii'' Sakamoto et al. 2021 * ''Adlercreutzia mucosicola'' (Clavel ''et al''. 2009) Nouioui ''et al''. 2018 * ''Adlercreutzia muris'' (Lagkouvardos ''et al''. 2016) Nouioui ''et al''. 2018 * ''Adlercreutzia rubneri'' Stoll et al. 2021 Taxonomy In 2018, Nouioui ''et al.'' proposed merging the genera ''Asaccharobacter, Enterorhabdus'' and ''Parvibacter'' within the genus ''Aldercreutzia'' based on observed clustering of these genera within phyl ...
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Enterorhabdus
''Adlercreutzia'' is a genus in the phylum Actinomycetota (Bacteria). Etymology The generic name derives from H. Adlercreutz, a professor at the University of Helsinki in Finland, for his contributions to research on the effects of phytoestrogens on human health. Species The genus contains the following species: * ''Adlercreutzia caecicola ''(Clavel et al. 2013) Nouioui et al. 2018 * ''Adlercreutzia caecimuris'' (Clavel ''et al''. 2010) Nouioui ''et al''. 2018 * ''Adlercreutzia equolifaciens'' Maruo ''et al''. 2008 * ''Adlercreutzia hattorii'' Sakamoto et al. 2021 * ''Adlercreutzia mucosicola'' (Clavel ''et al''. 2009) Nouioui ''et al''. 2018 * ''Adlercreutzia muris'' (Lagkouvardos ''et al''. 2016) Nouioui ''et al''. 2018 * ''Adlercreutzia rubneri'' Stoll et al. 2021 Taxonomy In 2018, Nouioui ''et al.'' proposed merging the genera ''Asaccharobacter, Enterorhabdus'' and ''Parvibacter'' within the genus ''Aldercreutzia'' based on observed clustering of these genera within phyl ...
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Adlercreutzia Caecicola
''Adlercreutzia'' is a genus in the phylum Actinomycetota (Bacteria). Etymology The generic name derives from H. Adlercreutz, a professor at the University of Helsinki in Finland, for his contributions to research on the effects of phytoestrogens on human health. Species The genus contains the following species: * ''Adlercreutzia caecicola ''(Clavel et al. 2013) Nouioui et al. 2018 * ''Adlercreutzia caecimuris'' (Clavel ''et al''. 2010) Nouioui ''et al''. 2018 * ''Adlercreutzia equolifaciens'' Maruo ''et al''. 2008 * ''Adlercreutzia hattorii'' Sakamoto et al. 2021 * ''Adlercreutzia mucosicola'' (Clavel ''et al''. 2009) Nouioui ''et al''. 2018 * ''Adlercreutzia muris'' (Lagkouvardos ''et al''. 2016) Nouioui ''et al''. 2018 * ''Adlercreutzia rubneri'' Stoll et al. 2021 Taxonomy In 2018, Nouioui ''et al.'' proposed merging the genera ''Asaccharobacter, Enterorhabdus'' and ''Parvibacter'' within the genus ''Aldercreutzia'' based on observed clustering of these genera within phyl ...
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Adlercreutzia Caecimuris
''Adlercreutzia'' is a genus in the phylum Actinomycetota (Bacteria). Etymology The generic name derives from H. Adlercreutz, a professor at the University of Helsinki in Finland, for his contributions to research on the effects of phytoestrogens on human health. Species The genus contains the following species: * ''Adlercreutzia caecicola ''(Clavel et al. 2013) Nouioui et al. 2018 * ''Adlercreutzia caecimuris'' (Clavel ''et al''. 2010) Nouioui ''et al''. 2018 * ''Adlercreutzia equolifaciens'' Maruo ''et al''. 2008 * ''Adlercreutzia hattorii'' Sakamoto et al. 2021 * ''Adlercreutzia mucosicola'' (Clavel ''et al''. 2009) Nouioui ''et al''. 2018 * ''Adlercreutzia muris'' (Lagkouvardos ''et al''. 2016) Nouioui ''et al''. 2018 * ''Adlercreutzia rubneri'' Stoll et al. 2021 Taxonomy In 2018, Nouioui ''et al.'' proposed merging the genera ''Asaccharobacter, Enterorhabdus'' and ''Parvibacter'' within the genus ''Aldercreutzia'' based on observed clustering of these genera within phyl ...
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Adlercreutzia Muris
''Adlercreutzia'' is a genus in the phylum Actinomycetota (Bacteria). Etymology The generic name derives from H. Adlercreutz, a professor at the University of Helsinki in Finland, for his contributions to research on the effects of phytoestrogens on human health. Species The genus contains the following species: * ''Adlercreutzia caecicola ''(Clavel et al. 2013) Nouioui et al. 2018 * ''Adlercreutzia caecimuris'' (Clavel ''et al''. 2010) Nouioui ''et al''. 2018 * ''Adlercreutzia equolifaciens'' Maruo ''et al''. 2008 * ''Adlercreutzia hattorii'' Sakamoto et al. 2021 * ''Adlercreutzia mucosicola'' (Clavel ''et al''. 2009) Nouioui ''et al''. 2018 * ''Adlercreutzia muris'' (Lagkouvardos ''et al''. 2016) Nouioui ''et al''. 2018 * ''Adlercreutzia rubneri'' Stoll et al. 2021 Taxonomy In 2018, Nouioui ''et al.'' proposed merging the genera ''Asaccharobacter, Enterorhabdus'' and ''Parvibacter'' within the genus ''Aldercreutzia'' based on observed clustering of these genera within phyl ...
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Eggerthellales
The ''Eggerthellaceae'' are a family of Gram-positive, rod- or coccus-shaped Actinomycetota. It is the sole family within the order ''Eggerthellales.'' The name ''Eggerthellaceae'' is derived from the Latin term ''Eggerthella,'' referring to the type genus of the family and the suffix "-ceae," an ending used to denote a family. Together, ''Eggerthellaceae'' refers to a family whose nomenclatural type is the genus ''Eggerthella''. Biochemical characteristics and molecular signatures Members of this family are mostly anaerobic, non-motile (with the exception of some ''Gordonibacter'' and ''Senegalimassilia'' species that exhibit motility), asaccharolytic and do not form spores. ''Eggerthellaceae'' species are commonly isolated from human and animal faeces and other human sources such as the colon, vagina, oral cavity and blood. Some species have also been isolated from human samples of periodontal or endodontic infections, Crohn's disease and severe blood bacteremia. The G+C co ...
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Eggerthellaceae
The ''Eggerthellaceae'' are a family of Gram-positive, rod- or coccus-shaped Actinomycetota. It is the sole family within the order ''Eggerthellales.'' The name ''Eggerthellaceae'' is derived from the Latin term ''Eggerthella,'' referring to the type genus of the family and the suffix "-ceae," an ending used to denote a family. Together, ''Eggerthellaceae'' refers to a family whose nomenclatural type is the genus ''Eggerthella''. Biochemical characteristics and molecular signatures Members of this family are mostly anaerobic, non-motile (with the exception of some ''Gordonibacter'' and ''Senegalimassilia'' species that exhibit motility), asaccharolytic and do not form spores. ''Eggerthellaceae'' species are commonly isolated from human and animal faeces and other human sources such as the colon, vagina, oral cavity and blood. Some species have also been isolated from human samples of periodontal or endodontic infections, Crohn's disease and severe blood bacteremia. The G+C co ...
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Parvibacter
''Parvibacter'' is a genus in the phylum Actinomycetota containing a single species, ''Parvibacter caecicola''. Taxonomy In 2018, Nouioui ''et al.'' proposed merging the genus ''Parvibacter'' along with the genera ''Asaccharobacter and Enterorhabdus'' within the genus '' Aldercreutzia'' based on observed clustering of these genera within phylogenetic trees. However, subsequent phylogenetic analyses observed that ''Parvibacter caecicola'' exhibited much deeper branching compared to other ''Aldercreutzia'' species. Its phylogenetic distinctness was further demonstrated by the presence of five conserved signature indels Conserved signature inserts and deletions (CSIs) in protein sequences provide an important category of molecular markers for understanding phylogenetic relationships. CSIs, brought about by rare genetic changes, provide useful phylogenetic markers ... (CSIs) that are exclusively shared by all ''Aldercreutzia'' species except for ''P. caecicola''. Thus, ''P. caeci ...
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Bacterial Taxonomy
Bacterial taxonomy is the taxonomy, i.e. the rank-based classification, of bacteria. In the scientific classification established by Carl Linnaeus, each species has to be assigned to a genus ( binary nomenclature), which in turn is a lower level of a hierarchy of ranks (family, suborder, order, subclass, class, division/phyla, kingdom and domain). In the currently accepted classification of life, there are three domains (Eukaryotes, Bacteria and Archaea), which, in terms of taxonomy, despite following the same principles have several different conventions between them and between their subdivisions as they are studied by different disciplines (botany, zoology, mycology and microbiology). For example, in zoology there are type specimens, whereas in microbiology there are type strains. Diversity Prokaryotes share many common features, such as lack of nuclear membrane, unicellularity, division by binary-fission and generally small size. The various species differ amongst each ot ...
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Cysteine—tRNA Ligase
In enzymology, a cysteine—tRNA ligase () is an enzyme that catalyzes the chemical reaction :ATP + L-cysteine + tRNACys \rightleftharpoons AMP + diphosphate + L-cysteinyl-tRNACys The 3 substrates of this enzyme are ATP, L-cysteine, and tRNA(Cys), whereas its 3 products are AMP, diphosphate, and L-cysteinyl-tRNA(Cys). This enzyme belongs to the family of ligases, to be specific those forming carbon-oxygen bonds in aminoacyl-tRNA and related compounds. The systematic name of this enzyme class is L-cysteine:tRNACys ligase (AMP-forming). Other names in common use include cysteinyl-tRNA synthetase, cysteinyl-transferRNA synthetase, cysteinyl-transfer ribonucleate synthetase, and cysteine translase. This enzyme participates in cysteine metabolism and aminoacyl-trna biosynthesis. Structural studies As of late 2007, 3 structures A structure is an arrangement and organization of interrelated elements in a material object or system, or the object or system so organized. Materia ...
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Valine—tRNA Ligase
In enzymology, a valine—tRNA ligase () is an enzyme that catalyzes the chemical reaction :ATP + L-valine + tRNAVal \rightleftharpoons AMP + diphosphate + L-valyl-tRNAVal The 3 substrates of this enzyme are ATP, L-valine, and tRNA(Val), whereas its 3 products are AMP, diphosphate, and L-valyl-tRNA(Val). This enzyme belongs to the family of ligases, to be specific those forming carbon-oxygen bonds in aminoacyl-tRNA and related compounds. The systematic name of this enzyme class is L-valine:tRNAVal ligase (AMP-forming). Other names in common use include valyl-tRNA synthetase, valyl-transfer ribonucleate synthetase, valyl-transfer RNA synthetase, valyl-transfer ribonucleic acid synthetase, valine transfer ribonucleate ligase, and valine translase. This enzyme participates in valine, leucine and isoleucine biosynthesis and aminoacyl-trna biosynthesis. Structural studies As of late 2007, 5 structures A structure is an arrangement and organization of interrelated elements ...
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Phosphoribosylformylglycinamidine Synthase
In enzymology, a phosphoribosylformylglycinamidine synthase () is an enzyme that catalyzes the chemical reaction :ATP + ''N''2-formyl-''N''1-(5-phospho-D-ribosyl)glycinamide + L-glutamine + H2O \rightleftharpoons ADP + phosphate + 2-(formamido)-''N''1-(5-phospho-D-ribosyl)acetamidine + L-glutamate The 4 substrates of this enzyme are ATP, N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide, L-glutamine, and H2O, whereas its 4 products are ADP, phosphate, 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine, and L-glutamate. This enzyme belongs to the family of ligases, specifically those forming carbon-nitrogen bonds carbon-nitrogen ligases with glutamine as amido-N-donor. The systematic name of this enzyme class is N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide:L-glutamine amido-ligase (ADP-forming). Other names in common use include phosphoribosylformylglycinamidine synthetase, formylglycinamide ribonucloetide amidotransferase, phosphoribosylformylglycineamidine synthetase, FGAM syn ...
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