Cystobacter Miniatus
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Cystobacter Miniatus
''Cystobacter'' is a genus in the phylum Myxococcota (Bacteria). Etymology The genus name stems from Greek noun '' κύστις (kustis)'', meaning "bladder" and Neolatin masculine noun '' bacter'' "rod" consequently the Neolatin masculine noun ''Cystobacter'' means bladder-forming rod. Species The genus contains 8 species (including basonyms and synonyms), namely * '' C. armeniaca'' Reichenbach 2007 (L. fem. n. ''armeniaca'', an apricot-tree, intended to mean apricot-colored.) * '' C. badius'' Reichenbach 2007 (L. masc. adj. ''badius'', chestnut brown.) * '' C. ferrugineus'' ( Krzemieniewska and Krzemieniewski 1927) McCurdy 1970 (L. masc. adj. ''ferrugineus'', of the color of iron-rust, dark-red.) * '' C. fuscus'' Schroeter 1886 (L. masc. adj. ''fuscus'', dark, swarthy, dusky, tawny.) * '' C. miniatus'' Reichenbach 2007 (L. masc. part. adj. ''miniatus'', cinnabar-red.) * '' C. velatus'' Reichenbach 2007 (L. part. adj. ''velatus'', veiled, covered.) Phylogeny The currently acc ...
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Myxococcota
The Myxococcota are a phylum of bacteria known as the fruiting gliding bacteria. All species of this group are Gram-negative. They are predominantly aerobic genera that release myxospores in unfavorable environments. Phylogeny The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LSPN) and the National Center for Biotechnology Information (NCBI). See also * List of bacterial orders * List of bacteria genera * Bacterial taxonomy Bacterial taxonomy is the taxonomy, i.e. the rank-based classification, of bacteria. In the scientific classification established by Carl Linnaeus, each species has to be assigned to a genus ( binary nomenclature), which in turn is a lower level ... References External links * {{Taxonbar, from=Q307535 ...
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Cystobacter Miniatus
''Cystobacter'' is a genus in the phylum Myxococcota (Bacteria). Etymology The genus name stems from Greek noun '' κύστις (kustis)'', meaning "bladder" and Neolatin masculine noun '' bacter'' "rod" consequently the Neolatin masculine noun ''Cystobacter'' means bladder-forming rod. Species The genus contains 8 species (including basonyms and synonyms), namely * '' C. armeniaca'' Reichenbach 2007 (L. fem. n. ''armeniaca'', an apricot-tree, intended to mean apricot-colored.) * '' C. badius'' Reichenbach 2007 (L. masc. adj. ''badius'', chestnut brown.) * '' C. ferrugineus'' ( Krzemieniewska and Krzemieniewski 1927) McCurdy 1970 (L. masc. adj. ''ferrugineus'', of the color of iron-rust, dark-red.) * '' C. fuscus'' Schroeter 1886 (L. masc. adj. ''fuscus'', dark, swarthy, dusky, tawny.) * '' C. miniatus'' Reichenbach 2007 (L. masc. part. adj. ''miniatus'', cinnabar-red.) * '' C. velatus'' Reichenbach 2007 (L. part. adj. ''velatus'', veiled, covered.) Phylogeny The currently acc ...
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Microbiology
Microbiology () is the scientific study of microorganisms, those being unicellular (single cell), multicellular (cell colony), or acellular (lacking cells). Microbiology encompasses numerous sub-disciplines including virology, bacteriology, protistology, mycology, immunology, and parasitology. Eukaryotic microorganisms possess membrane-bound organelles and include fungi and protists, whereas prokaryotic organisms—all of which are microorganisms—are conventionally classified as lacking membrane-bound organelles and include Bacteria and Archaea. Microbiologists traditionally relied on culture, staining, and microscopy. However, less than 1% of the microorganisms present in common environments can be cultured in isolation using current means. Microbiologists often rely on molecular biology tools such as DNA sequence based identification, for example the 16S rRNA gene sequence used for bacteria identification. Viruses have been variably classified as organisms, as they have ...
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Bacterial Taxonomy
Bacterial taxonomy is the taxonomy, i.e. the rank-based classification, of bacteria. In the scientific classification established by Carl Linnaeus, each species has to be assigned to a genus ( binary nomenclature), which in turn is a lower level of a hierarchy of ranks (family, suborder, order, subclass, class, division/phyla, kingdom and domain). In the currently accepted classification of life, there are three domains (Eukaryotes, Bacteria and Archaea), which, in terms of taxonomy, despite following the same principles have several different conventions between them and between their subdivisions as they are studied by different disciplines (botany, zoology, mycology and microbiology). For example, in zoology there are type specimens, whereas in microbiology there are type strains. Diversity Prokaryotes share many common features, such as lack of nuclear membrane, unicellularity, division by binary-fission and generally small size. The various species differ amongst each ot ...
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Genome Taxonomy Database
The Genome Taxonomy Database (GTDB) is an online database that maintains information on a proposed nomenclature of prokaryotes, following a phylogenomic approach based on a set of conserved single-copy proteins. In addition to breaking up paraphyletic groups, this method also reassigns taxonomic ranks algorithmically, creating new names in both cases. Information for archaea was added in 2020, along with a species classification based on average nucleotide identity. Each update incorporates new genomes as well as human adjustments to the taxonomy. An open-source tool called GTDB-Tk is available to classify draft genomes into the GTDB hierarchy. The GTDB system, via GTDB-Tk, has been used to catalogue not-yet-named bacteria in the human gut microbiome and other metagenomic sources. The GTDB is incorporated into the ''Bergey's Manual of Systematics of Archaea and Bacteria'' in 2019 as its phylogenomic resource. See also * PhyloCode * National Center for Biotechnology Informa ...
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The All-Species Living Tree Project
The All-Species Living Tree' Project is a collaboration between various academic groups/institutes, such as ARB Project, ARB, SILVA rRNA database project, and List of Prokaryotic names with Standing in Nomenclature, LPSN, with the aim of assembling a database of 16S ribosomal RNA, 16S rRNA sequences of all validly published species of ''Bacteria'' and ''Archaea''. At one stage, 23S ribosomal RNA, 23S sequences were also collected, but this has since stopped. Currently there are over 10,950 species in the aligned dataset and several more are being added either as new species are discovered or species that are not represented in the database are sequenced. Initially the latter group consisted of 7% of species. Similar (and more recent) projects include the Genomic Encyclopedia of Bacteria and Archaea (GEBA), which focused on whole genome sequencing of bacteria and archaea. Tree The tree was created by maximum likelihood analysis without bootstrap: consequently accuracy is traded ...
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National Center For Biotechnology Information
The National Center for Biotechnology Information (NCBI) is part of the United States National Library of Medicine (NLM), a branch of the National Institutes of Health (NIH). It is approved and funded by the government of the United States. The NCBI is located in Bethesda, Maryland, and was founded in 1988 through legislation sponsored by US Congressman Claude Pepper. The NCBI houses a series of databases relevant to biotechnology and biomedicine and is an important resource for bioinformatics tools and services. Major databases include GenBank for DNA sequences and PubMed, a bibliographic database for biomedical literature. Other databases include the NCBI Epigenomics database. All these databases are available online through the Entrez search engine. NCBI was directed by David Lipman, one of the original authors of the BLAST sequence alignment program and a widely respected figure in bioinformatics. GenBank NCBI had responsibility for making available the GenBank DNA seque ...
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List Of Prokaryotic Names With Standing In Nomenclature
List of Prokaryotic names with Standing in Nomenclature (LPSN) is an online database that maintains information on the naming and taxonomy of prokaryotes, following the taxonomy requirements and rulings of the International Code of Nomenclature of Prokaryotes The International Code of Nomenclature of Prokaryotes (ICNP) formerly the International Code of Nomenclature of Bacteria (ICNB) or Bacteriological Code (BC) governs the scientific names for Bacteria and Archaea.P. H. A. Sneath, 2003. A short hist .... The database was curated from 1997 to June 2013 by Jean P. Euzéby. From July 2013 to January 2020, LPSN was curated by Aidan C. Parte. In February 2020, a new version of LPSN was published as a service of the Leibniz Institute DSMZ, thereby also integrating the Prokaryotic Nomenclature Up-to-date service. References External links List of Prokaryotic names with Standing in Nomenclature
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Cystobacter Velatus
''Cystobacter'' is a genus in the phylum Myxococcota (Bacteria). Etymology The genus name stems from Greek noun '' κύστις (kustis)'', meaning "bladder" and Neolatin masculine noun '' bacter'' "rod" consequently the Neolatin masculine noun ''Cystobacter'' means bladder-forming rod. Species The genus contains 8 species (including basonyms and synonyms), namely * '' C. armeniaca'' Reichenbach 2007 (L. fem. n. ''armeniaca'', an apricot-tree, intended to mean apricot-colored.) * '' C. badius'' Reichenbach 2007 (L. masc. adj. ''badius'', chestnut brown.) * '' C. ferrugineus'' ( Krzemieniewska and Krzemieniewski 1927) McCurdy 1970 (L. masc. adj. ''ferrugineus'', of the color of iron-rust, dark-red.) * '' C. fuscus'' Schroeter 1886 (L. masc. adj. ''fuscus'', dark, swarthy, dusky, tawny.) * '' C. miniatus'' Reichenbach 2007 (L. masc. part. adj. ''miniatus'', cinnabar-red.) * '' C. velatus'' Reichenbach 2007 (L. part. adj. ''velatus'', veiled, covered.) Phylogeny The currently ac ...
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Cystobacter Fuscus
''Cystobacter'' is a genus in the phylum Myxococcota (Bacteria). Etymology The genus name stems from Greek noun '' κύστις (kustis)'', meaning "bladder" and Neolatin masculine noun '' bacter'' "rod" consequently the Neolatin masculine noun ''Cystobacter'' means bladder-forming rod. Species The genus contains 8 species (including basonyms and synonyms), namely * '' C. armeniaca'' Reichenbach 2007 (L. fem. n. ''armeniaca'', an apricot-tree, intended to mean apricot-colored.) * '' C. badius'' Reichenbach 2007 (L. masc. adj. ''badius'', chestnut brown.) * '' C. ferrugineus'' ( Krzemieniewska and Krzemieniewski 1927) McCurdy 1970 (L. masc. adj. ''ferrugineus'', of the color of iron-rust, dark-red.) * '' C. fuscus'' Schroeter 1886 (L. masc. adj. ''fuscus'', dark, swarthy, dusky, tawny.) * '' C. miniatus'' Reichenbach 2007 (L. masc. part. adj. ''miniatus'', cinnabar-red.) * '' C. velatus'' Reichenbach 2007 (L. part. adj. ''velatus'', veiled, covered.) Phylogeny The currently ac ...
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Bacteria
Bacteria (; singular: bacterium) are ubiquitous, mostly free-living organisms often consisting of one biological cell. They constitute a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria were among the first life forms to appear on Earth, and are present in most of its habitats. Bacteria inhabit soil, water, acidic hot springs, radioactive waste, and the deep biosphere of Earth's crust. Bacteria are vital in many stages of the nutrient cycle by recycling nutrients such as the fixation of nitrogen from the atmosphere. The nutrient cycle includes the decomposition of dead bodies; bacteria are responsible for the putrefaction stage in this process. In the biological communities surrounding hydrothermal vents and cold seeps, extremophile bacteria provide the nutrients needed to sustain life by converting dissolved compounds, such as hydrogen sulphide and methane, to energy. Bacteria also live in symbiotic and parasitic relationsh ...
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