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Aquificota
The ''Aquificota'' phylum is a diverse collection of bacteria that live in harsh environmental settings. The name ''Aquificota'' was given to this phylum based on an early genus identified within this group, ''Aquifex'' (“water maker”), which is able to produce water by oxidizing hydrogen. They have been found in springs, pools, and oceans. They are autotrophs, and are the primary carbon fixers in their environments. These bacteria are Gram-negative, non-spore-forming rods. They are true bacteria (domain Bacteria) as opposed to the other inhabitants of extreme environments, the Archaea. Taxonomy The ''Aquificota'' currently contain 15 genera and 42 validly published species. The phylum comprises a single class and two orders. Aquificales consists of the families Aquificaceae and Hydrogenothermaceae, while the Desulfurobacteriaceae are the only family within the Desulfobacteriales. ''Thermosulfidibacter takaii'' is not assigned to a family within the phylum based on its phylog ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Aquificales
The ''Aquificota'' phylum is a diverse collection of bacteria that live in harsh environmental settings. The name ''Aquificota'' was given to this phylum based on an early genus identified within this group, ''Aquifex'' (“water maker”), which is able to produce water by oxidizing hydrogen. They have been found in springs, pools, and oceans. They are autotrophs, and are the primary carbon fixers in their environments. These bacteria are Gram-negative, non-spore-forming rods. They are true bacteria (domain Bacteria) as opposed to the other inhabitants of extreme environments, the Archaea. Taxonomy The ''Aquificota'' currently contain 15 genera and 42 validly published species. The phylum comprises a single class and two orders. Aquificales consists of the families Aquificaceae and Hydrogenothermaceae, while the Desulfurobacteriaceae are the only family within the Desulfobacteriales. ''Thermosulfidibacter takaii'' is not assigned to a family within the phylum based on its phylog ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Desulfurobacteriaceae
The Desulfurobacteriaceae family (biology), family are bacteria belonging to the Aquificota phylum. Phylogeny Taxonomy The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LSPN) and the National Center for Biotechnology Information (NCBI). * Class "Desulfurobacteriia" ** Order Desulfurobacteriales Gupta & Lali 2014 *** Family Desulfurobacteriaceae L'Haridon et al. 2006 em. Gupta & Lali 2013 **** Genus ''Balnearium'' Takai et al. 2003 ***** Species ''Balnearium lithotrophicum, B. lithotrophicum'' Takai et al. 2003 **** Genus ''Desulfurobacterium'' L'Haridon et al. 1998 emend. L'Haridon et al. 2006 ***** Species ''Desulfurobacterium atlanticum, D. atlanticum'' L'Haridon et al. 2006 ***** Species "''Desulfurobacterium crinifex, D. crinifex''" Alain et al. 2003 ***** Species ''Desulfurobacterium indicum, D. indicum'' Cao et al. 2017 ***** Species ''Desulfurobacterium pacificum, D. pacificum'' L'Haridon et al. 2006 ***** Species '' ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Thermotogota
The Thermotogota are a phylum of the domain Bacteria. The phylum Thermotogota is composed of Gram-negative staining, anaerobic, and mostly thermophilic and hyperthermophilic bacteria.Gupta, RS (2014) The Phylum Thermotogae. The Prokaryotes 989-1015. Springer Berlin Heidelberg. Characteristics The name of this phylum is derived from the existence of many of these organisms at high temperatures along with the characteristic sheath structure, or "toga", surrounding the cells of these species.Reysenbach, A.-L. (2001) Phylum BII. Thermotogae phy. nov. In: Bergey's Manual of Systematic Bacteriology, pp. 369-387. Eds D. R. Boone, R. W. Castenholz. Springer-Verlag: Berlin. Recently, some Thermotogota existing at moderate temperatures have also been identified. Although Thermotogota species exhibit Gram-negative staining, they are bounded by a single-unit lipid membrane, hence they are monoderm bacteria. Because of the ability of some Thermotogota species to thrive at high temperatures, th ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Conserved Signature Indels
Conserved signature inserts and deletions (CSIs) in protein sequences provide an important category of molecular markers for understanding phylogenetic relationships. CSIs, brought about by rare genetic changes, provide useful phylogenetic markers that are generally of defined size and they are flanked on both sides by conserved regions to ensure their reliability. While indels can be arbitrary inserts or deletions, CSIs are defined as only those protein indels that are present within conserved regions of the protein. The CSIs that are restricted to a particular clade or group of species, generally provide good phylogenetic markers of common evolutionary descent. Due to the rarity and highly specific nature of such changes, it is less likely that they could arise independently by either convergent or parallel evolution (i.e. homoplasy) and therefore are likely to represent synapomorphy. Other confounding factors such as differences in evolutionary rates at different sites or among ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Thermotogales
The Thermotogota are a phylum of the domain Bacteria. The phylum Thermotogota is composed of Gram-negative staining, anaerobic, and mostly thermophilic and hyperthermophilic bacteria.Gupta, RS (2014) The Phylum Thermotogae. The Prokaryotes 989-1015. Springer Berlin Heidelberg. Characteristics The name of this phylum is derived from the existence of many of these organisms at high temperatures along with the characteristic sheath structure, or "toga", surrounding the cells of these species.Reysenbach, A.-L. (2001) Phylum BII. Thermotogae phy. nov. In: Bergey's Manual of Systematic Bacteriology, pp. 369-387. Eds D. R. Boone, R. W. Castenholz. Springer-Verlag: Berlin. Recently, some Thermotogota existing at moderate temperatures have also been identified. Although Thermotogota species exhibit Gram-negative staining, they are bounded by a single-unit lipid membrane, hence they are monoderm bacteria. Because of the ability of some Thermotogota species to thrive at high temperatures, ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Hydrogenothermaceae
The Hydrogenothermaceae family are bacteria that live in harsh environmental settings. They have been found in hot springs, sulfur pools, and thermal ocean vents. They are true bacteria as opposed to the other inhabitants of extreme environments, the Archaea. An example occurrence of certain extremophiles in this family are organisms of the genus ''Sulfurihydrogenibium'' that are capable of surviving in extremely hot environments such as Hverigerdi, Iceland. Obtaining energy Hydrogenothermaceae families consist of aerobic or microaerophilic bacteria, which generally obtain energy by oxidation of hydrogen or reduced sulfur compounds by molecular oxygen. Phylogeny The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LSPN) and the National Center for Biotechnology Information The National Center for Biotechnology Information (NCBI) is part of the United States National Library of Medicine (NLM), a branch of the National Inst ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Aquifex
''Aquifex'' is a bacterial genus, belonging to phylum Aquificota. There is one species of ''Aquifex'' with a validly published name – '' A. pyrophilus'' – but "'' A. aeolicus''" is sometimes considered as species though it has no standing as a name given it has not been validly or effectively published. ''Aquifex'' spp. are extreme thermophiles, growing best at temperature of 85 °C to 95 °C. They are members of the ''Bacteria'' as opposed to the other inhabitants of extreme environments, the Archaea. ''Aquifex'' spp. are rod-shaped bacteria with a length of 2 to 6 µm, have a diameter of around 0.5 µm and are motile. They are non-sporeforming, Gram negative autotrophs. ''Aquifex'' means ''water-maker'' in Latin, and refers to the fact that its method of respiration creates water. ''Aquifex'' tend to form cell aggregates composed of up to 100 individual cells. ''Aquifex'' spp. are thermophilic and often grow near underwater volcanoes or hot springs. ''A. ae ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
The All-Species Living Tree Project
The All-Species Living Tree' Project is a collaboration between various academic groups/institutes, such as ARB Project, ARB, SILVA rRNA database project, and List of Prokaryotic names with Standing in Nomenclature, LPSN, with the aim of assembling a database of 16S ribosomal RNA, 16S rRNA sequences of all validly published species of ''Bacteria'' and ''Archaea''. At one stage, 23S ribosomal RNA, 23S sequences were also collected, but this has since stopped. Currently there are over 10,950 species in the aligned dataset and several more are being added either as new species are discovered or species that are not represented in the database are sequenced. Initially the latter group consisted of 7% of species. Similar (and more recent) projects include the Genomic Encyclopedia of Bacteria and Archaea (GEBA), which focused on whole genome sequencing of bacteria and archaea. Tree The tree was created by maximum likelihood analysis without bootstrap: consequently accuracy is traded ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Gram-negative
Gram-negative bacteria are bacteria that do not retain the crystal violet stain used in the Gram staining method of bacterial differentiation. They are characterized by their cell envelopes, which are composed of a thin peptidoglycan cell wall sandwiched between an inner cytoplasmic cell membrane and a bacterial outer membrane. Gram-negative bacteria are found in virtually all environments on Earth that support life. The gram-negative bacteria include the model organism ''Escherichia coli'', as well as many pathogenic bacteria, such as ''Pseudomonas aeruginosa'', ''Chlamydia trachomatis'', and ''Yersinia pestis''. They are a significant medical challenge as their outer membrane protects them from many antibiotics (including penicillin), detergents that would normally damage the inner cell membrane, and lysozyme, an antimicrobial enzyme produced by animals that forms part of the innate immune system. Additionally, the outer leaflet of this membrane comprises a complex lipo ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Bacteria
Bacteria (; singular: bacterium) are ubiquitous, mostly free-living organisms often consisting of one biological cell. They constitute a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria were among the first life forms to appear on Earth, and are present in most of its habitats. Bacteria inhabit soil, water, acidic hot springs, radioactive waste, and the deep biosphere of Earth's crust. Bacteria are vital in many stages of the nutrient cycle by recycling nutrients such as the fixation of nitrogen from the atmosphere. The nutrient cycle includes the decomposition of dead bodies; bacteria are responsible for the putrefaction stage in this process. In the biological communities surrounding hydrothermal vents and cold seeps, extremophile bacteria provide the nutrients needed to sustain life by converting dissolved compounds, such as hydrogen sulphide and methane, to energy. Bacteria also live in symbiotic and parasitic relationsh ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Aquificaceae
The Aquificaceae family are bacteria that live in harsh environmental settings such as hot springs, sulfur pools, and hydrothermal vents. Although they are true bacteria as opposed to the other inhabitants of extreme environments, the Archaea, Aquificaceae genera are an early phylogenetic branch. Phylogeny The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI) Unassigned species: * "''Aquifex aeolicus''" Huber and Stetter 2001 See also * List of bacterial orders * List of bacteria genera This article lists the genera of the bacteria. The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI). However many taxonomic names are ... References * Reysenbach A-L, Phylum BI (2001) Aquificae phy. nov. In: Boone DR, Castenholz RW (eds) Bergey's Manual of Systematic ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Phylum (biology)
In biology, a phylum (; plural: phyla) is a level of classification or taxonomic rank below kingdom and above class. Traditionally, in botany the term division has been used instead of phylum, although the International Code of Nomenclature for algae, fungi, and plants accepts the terms as equivalent. Depending on definitions, the animal kingdom Animalia contains about 31 phyla, the plant kingdom Plantae contains about 14 phyla, and the fungus kingdom Fungi contains about 8 phyla. Current research in phylogenetics is uncovering the relationships between phyla, which are contained in larger clades, like Ecdysozoa and Embryophyta. General description The term phylum was coined in 1866 by Ernst Haeckel from the Greek (, "race, stock"), related to (, "tribe, clan"). Haeckel noted that species constantly evolved into new species that seemed to retain few consistent features among themselves and therefore few features that distinguished them as a group ("a self-contained uni ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
