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Aquicella
''Aquicella'' is a genus of Gram-negative rod-shaped cells and filaments in the family ''Coxiellaceae'' from the order ''Legionellales''. The type species of this genus is ''Aquicella lusitana.'' The name ''Aquicella'' is composed of the Latin term ''aqua'' (referring to water) and the Latin term ''cella'' (referring to a chamber, closet, or cabinet, or in biology, a cell). Together, the name ''Aquicella'' translates to a cell from water. Biochemical Characteristics and Molecular Signatures Members of this genus grow in protozoa and can be isolated from hydrothermal areas. All members are strictly aerobic, non-motile, do not produce spores and are oxidase and catalase negative. ''Aquicella'' species can grow in temperatures ranging from 30 °C to 43 °C and require a neutral pH and growth media containing activated charcoal and a-ketoglutarate. Colonies appear whitish with a pink or blue sheen. Analyses of genome sequences from ''Aquicella'' species identified six co ...
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Aquicella Lusitana
''Aquicella'' is a genus of Gram-negative bacteria, Gram-negative rod-shaped cells and filaments in the family ''Coxiellaceae'' from the order ''Legionellales''. The type species of this genus is ''Aquicella lusitana.'' The name ''Aquicella'' is composed of the Latin term ''aqua'' (referring to water) and the Latin term ''cella'' (referring to a chamber, closet, or cabinet, or in biology, a cell). Together, the name ''Aquicella'' translates to a cell from water. Biochemical Characteristics and Molecular Signatures Members of this genus grow in protozoa and can be isolated from hydrothermal areas. All members are strictly Aerobic organism, aerobic, non-motile, do not produce spores and are oxidase and catalase negative. ''Aquicella'' species can grow in temperatures ranging from 30 °C to 43 °C and require a neutral pH and growth media containing activated charcoal and a-ketoglutarate. Colonies appear whitish with a pink or blue sheen. Analyses of genome sequences fro ...
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Aquicella Siphonis
''Aquicella'' is a genus of Gram-negative rod-shaped cells and filaments in the family ''Coxiellaceae'' from the order '' Legionellales''. The type species of this genus is ''Aquicella lusitana.'' The name ''Aquicella'' is composed of the Latin term ''aqua'' (referring to water) and the Latin term ''cella'' (referring to a chamber, closet, or cabinet, or in biology, a cell). Together, the name ''Aquicella'' translates to a cell from water. Biochemical Characteristics and Molecular Signatures Members of this genus grow in protozoa and can be isolated from hydrothermal areas. All members are strictly aerobic, non-motile, do not produce spores and are oxidase and catalase negative. ''Aquicella'' species can grow in temperatures ranging from 30 °C to 43 °C and require a neutral pH and growth media containing activated charcoal and a-ketoglutarate. Colonies appear whitish with a pink or blue sheen. Analyses of genome sequences from ''Aquicella'' species identified six ...
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Legionellales
The Legionellales are an order of Pseudomonadota. Like all Pseudomonadota, they are Gram-negative.George M. Garrity: ''Bergey's Manual of Systematic Bacteriology''. 2. Auflage. Springer, New York, 2005, Volume 2: ''The Proteobacteria, Part B: The Gammaproteobacteria'' They comprise two families, typified by ''Legionella'' and '' Coxiella'', both of which include notable pathogens. For example, Q fever is caused by ''Coxiella burnetii'' and ''Legionella pneumophila'' causes Legionnaires' disease and Pontiac fever. Members of the order ''Legionellales'' can be molecularly distinguished from other Gammaproteobacteria by the presence of four conserved signature indels Conserved signature inserts and deletions (CSIs) in protein sequences provide an important category of molecular markers for understanding phylogenetic relationships. CSIs, brought about by rare genetic changes, provide useful phylogenetic markers ... (CSIs) in the proteins tRNA-guanine(34) transglycosylase, lipoprotei ...
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Coxiellaceae
The Coxiellaceae are a family in the order Legionellales. ''Coxiella burnetii'' is a species in this order. Another is ''Rickettsiella melolonthae''. References Legionellales Bacteria families {{Legionellales-stub ...
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Gram-negative Bacteria
Gram-negative bacteria are bacteria that do not retain the crystal violet stain used in the Gram staining method of bacterial differentiation. They are characterized by their cell envelopes, which are composed of a thin peptidoglycan cell wall sandwiched between an inner cytoplasmic cell membrane and a bacterial outer membrane. Gram-negative bacteria are found in virtually all environments on Earth that support life. The gram-negative bacteria include the model organism ''Escherichia coli'', as well as many pathogenic bacteria, such as ''Pseudomonas aeruginosa'', '' Chlamydia trachomatis'', and ''Yersinia pestis''. They are a significant medical challenge as their outer membrane protects them from many antibiotics (including penicillin), detergents that would normally damage the inner cell membrane, and lysozyme, an antimicrobial enzyme produced by animals that forms part of the innate immune system. Additionally, the outer leaflet of this membrane comprises a complex lipopol ...
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Protozoa
Protozoa (singular: protozoan or protozoon; alternative plural: protozoans) are a group of single-celled eukaryotes, either free-living or parasitic, that feed on organic matter such as other microorganisms or organic tissues and debris. Historically, protozoans were regarded as "one-celled animals", because they often possess animal-like behaviours, such as motility and predation, and lack a cell wall, as found in plants and many algae. When first introduced by Georg Goldfuss (originally spelled Goldfuß) in 1818, the taxon Protozoa was erected as a class within the Animalia, with the word 'protozoa' meaning "first animals". In later classification schemes it was elevated to a variety of higher ranks, including phylum, subkingdom and kingdom, and sometimes included within Protoctista or Protista. The approach of classifying Protozoa within the context of Animalia was widespread in the 19th and early 20th century, but not universal. By the 1970s, it became usual to require th ...
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Aerobic Organism
Aerobic means "requiring air," in which "air" usually means oxygen. Aerobic may also refer to * Aerobic exercise, prolonged exercise of moderate intensity * Aerobics, a form of aerobic exercise * Aerobic respiration, the aerobic process of cellular respiration * Aerobic organism Aerobic means "requiring air," in which "air" usually means oxygen. Aerobic may also refer to * Aerobic exercise, prolonged exercise of moderate intensity * Aerobics Aerobics is a form of physical exercise that combines rhythmic aerobic exe ..., a living thing with an oxygen-based metabolism See also * Anaerobic (other) {{disambiguation ...
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Conserved Signature Indels
Conserved signature inserts and deletions (CSIs) in protein sequences provide an important category of molecular markers for understanding phylogenetic relationships. CSIs, brought about by rare genetic changes, provide useful phylogenetic markers that are generally of defined size and they are flanked on both sides by conserved regions to ensure their reliability. While indels can be arbitrary inserts or deletions, CSIs are defined as only those protein indels that are present within conserved regions of the protein. The CSIs that are restricted to a particular clade or group of species, generally provide good phylogenetic markers of common evolutionary descent. Due to the rarity and highly specific nature of such changes, it is less likely that they could arise independently by either convergent or parallel evolution (i.e. homoplasy) and therefore are likely to represent synapomorphy. Other confounding factors such as differences in evolutionary rates at different sites or among ...
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Crossover Junction Endodeoxyribonuclease
Crossover junction endodeoxyribonuclease, also known as Holliday junction resolvase, Holliday junction endonuclease, Holliday junction-cleaving endonuclease, Holliday junction-resolving endoribonuclease, crossover junction endoribonuclease, and cruciform-cutting endonuclease, is an enzyme involved in DNA repair and homologous recombination. Specifically, it performs endonucleolytic cleavage that results in single-stranded crossover between two homologous DNA molecules at the Holliday junction to produce recombinant DNA products for chromosomal segregation. This process is known as Holliday junction resolution. Biological Function The Holliday junction is a structure that forms during genetic recombination, and links two double-stranded DNA molecules with a single-stranded crossover, which form during mitotic and meiotic recombination. Crossover junction endodeoxyribonucleases catalyze Holiday junction resolution, which is the formation of separate recombinant DNA molecules and chr ...
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Pyruvate Dehydrogenase (acetyl-transferring)
Pyruvate dehydrogenase is an enzyme that catalyzes the reaction of pyruvate and a lipoamide to give the acetylated dihydrolipoamide and carbon dioxide. The conversion requires the coenzyme thiamine pyrophosphate. Pyruvate dehydrogenase is usually encountered as a component, referred to as E1, of the pyruvate dehydrogenase complex (PDC). PDC consists of other enzymes, referred to as E2 and E3. Collectively E1-E3 transform pyruvate, NAD+, coenzyme A into acetyl-CoA, CO2, and NADH. The conversion is crucial because acetyl-CoA may then be used in the citric acid cycle to carry out cellular respiration. To distinguish between this enzyme and the PDC, it is systematically called pyruvate dehydrogenase (acetyl-transferring). Mechanism The thiamine pyrophosphate (TPP) converts to an ylide by deprotonation. The ylide attack the ketone group of pyruvate. The resulting adduct decarboxylation, decarboxylates. The resulting 1,3-dipole reductively acetylates lipoamide-E2. In terms of ...
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Bacteria Genera
This article lists the genera of the bacteria. The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI). However many taxonomic names are taken from the GTDB release 07-RS207 (8th April 2022). Phyla {, border="0" style="width: 100%;" ! , - , style="border:0px" valign="top", {, class="wikitable sortable" style="width: 100%; font-size: 95%;" !Syperphylum !Phylum !Authority !Synonyms , - , Parakaryota , , , Myojin parakaryote , - , , " Canglongiota" , Zhang et al. 2022 , , - , , " Fervidibacteria" , , OctSpa1-106 , - , , " Heilongiota" , Zhang et al. 2022 , , - , , " Qinglongiota" , Zhang et al. 2022 , , - , , " Salinosulfoleibacteria" , Tazi et al. 2006 , , - , , " Teskebacteria" , Dojka 1998 , WS1 , - , , " Tharpellota" , Speth et al. 2022 , , - , Terrabacteria , Chloroflexota , Whitman et al. 2018 , "Thermomicrobiota" , - , Terrabacteria , " Dormibacterot ...
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