Acridine dyes
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Acridine is an
organic compound In chemistry, organic compounds are generally any chemical compounds that contain carbon-hydrogen or carbon-carbon bonds. Due to carbon's ability to catenate (form chains with other carbon atoms), millions of organic compounds are known. The ...
and a nitrogen heterocycle with the formula C13H9N. Acridines are substituted derivatives of the parent ring. It is a planar molecule that is structurally related to
anthracene Anthracene is a solid polycyclic aromatic hydrocarbon (PAH) of formula C14H10, consisting of three fused benzene rings. It is a component of coal tar. Anthracene is used in the Economic production, production of the red dye alizarin and other dyes ...
with one of the central CH groups replaced by nitrogen. Like the related molecules
pyridine Pyridine is a basic heterocyclic organic compound with the chemical formula . It is structurally related to benzene, with one methine group replaced by a nitrogen atom. It is a highly flammable, weakly alkaline, water-miscible liquid with a d ...
and quinoline, acridine is mildly basic. It is an almost colorless solid, which crystallizes in needles. There are few commercial applications of acridines; at one time acridine dyes were popular, but they are now relegated to niche applications, such as with acridine orange. The name is a reference to the acrid odour and acrid skin-irritating effect of the compound.


Isolation and syntheses

Carl Gräbe Carl Gräbe (; 24 February 1841 – 19 January 1927) was a German industrial and academic chemist from Frankfurt am Main who held professorships in his field at Leipzig, Königsberg, and Geneva. He is known for the first synthesis of the ec ...
and Heinrich Caro first isolated acridine in 1870 from
coal tar Coal tar is a thick dark liquid which is a by-product of the production of coke and coal gas from coal. It is a type of creosote. It has both medical and industrial uses. Medicinally it is a topical medication applied to skin to treat psoriasi ...
. Acridine is separated from coal tar by extracting with dilute
sulfuric acid Sulfuric acid (American spelling and the preferred IUPAC name) or sulphuric acid ( Commonwealth spelling), known in antiquity as oil of vitriol, is a mineral acid composed of the elements sulfur, oxygen and hydrogen, with the molecular formu ...
. Addition of potassium dichromate to this solution precipitates acridine bichromate. The bichromate is decomposed using
ammonia Ammonia is an inorganic compound of nitrogen and hydrogen with the formula . A stable binary hydride, and the simplest pnictogen hydride, ammonia is a colourless gas with a distinct pungent smell. Biologically, it is a common nitrogenous was ...
. Acridine and its derivatives can be prepared by many synthetic processes. In the Bernthsen acridine synthesis, diphenylamine is condensed with
carboxylic acid In organic chemistry, a carboxylic acid is an organic acid that contains a carboxyl group () attached to an R-group. The general formula of a carboxylic acid is or , with R referring to the alkyl, alkenyl, aryl, or other group. Carboxylic ...
s in the presence of
zinc chloride Zinc chloride is the name of inorganic chemical compounds with the formula ZnCl2 and its hydrates. Zinc chlorides, of which nine crystalline forms are known, are colorless or white, and are highly soluble in water. This salt is hygroscopic and ev ...
. When
formic acid Formic acid (), systematically named methanoic acid, is the simplest carboxylic acid, and has the chemical formula HCOOH and structure . It is an important intermediate in chemical synthesis and occurs naturally, most notably in some ants. Es ...
is the carboxylic acid, the reaction yields the parent acridine. With the higher larger carboxylic acids, the derivatives substituted at the ''
meso Meso or mesos may refer to: * Apache Mesos, a computer clustering management platform * Meso, in-game currency for the massively multiplayer online role-playing game '' MapleStory'' * Meso compound, a stereochemical classification in chemistry * ...
'' carbon atom are generated. : Other older methods for the
organic synthesis Organic synthesis is a special branch of chemical synthesis and is concerned with the intentional construction of organic compounds. Organic molecules are often more complex than inorganic compounds, and their synthesis has developed into one o ...
of acridines include condensing diphenylamine with
chloroform Chloroform, or trichloromethane, is an organic compound with chemical formula, formula Carbon, CHydrogen, HChlorine, Cl3 and a common organic solvent. It is a colorless, strong-smelling, dense liquid produced on a large scale as a precursor to ...
in the presence of aluminium chloride, by passing the vapours of orthoaminodiphenylmethane over heated
litharge Litharge (from Greek lithargyros, lithos (stone) + argyros (silver) ''λιθάργυρος'') is one of the natural mineral forms of lead(II) oxide, PbO. Litharge is a secondary mineral which forms from the oxidation of galena ores. It forms as coa ...
, by heating salicylaldehyde with
aniline Aniline is an organic compound with the formula C6 H5 NH2. Consisting of a phenyl group attached to an amino group, aniline is the simplest aromatic amine In organic chemistry, an aromatic amine is an organic compound consisting of an aroma ...
and
zinc chloride Zinc chloride is the name of inorganic chemical compounds with the formula ZnCl2 and its hydrates. Zinc chlorides, of which nine crystalline forms are known, are colorless or white, and are highly soluble in water. This salt is hygroscopic and ev ...
or by distilling acridone (9-position a carbonyl group) over
zinc Zinc is a chemical element with the symbol Zn and atomic number 30. Zinc is a slightly brittle metal at room temperature and has a shiny-greyish appearance when oxidation is removed. It is the first element in group 12 (IIB) of the periodi ...
dust. Another classic method for the synthesis of acridones is the Lehmstedt-Tanasescu reaction. In
enzymology Enzymes () are proteins that act as biological catalysts by accelerating chemical reactions. The molecules upon which enzymes may act are called substrates, and the enzyme converts the substrates into different molecules known as products. A ...
, an
acridone synthase In enzymology, an acridone synthase () is an enzyme that catalyzes the chemical reaction :3 malonyl-CoA + N-methylanthraniloyl-CoA \rightleftharpoons 4 CoA + 1,3-dihydroxy-N-methylacridone + 3 CO2 Thus, the two substrates of this enzyme are mal ...
() is an
enzyme Enzymes () are proteins that act as biological catalysts by accelerating chemical reactions. The molecules upon which enzymes may act are called substrates, and the enzyme converts the substrates into different molecules known as products. A ...
that
catalyzes Catalysis () is the process of increasing the rate of a chemical reaction by adding a substance known as a catalyst (). Catalysts are not consumed in the reaction and remain unchanged after it. If the reaction is rapid and the catalyst recyc ...
the
chemical reaction A chemical reaction is a process that leads to the IUPAC nomenclature for organic transformations, chemical transformation of one set of chemical substances to another. Classically, chemical reactions encompass changes that only involve the pos ...
:3 malonyl-CoA + ''N''-methylanthraniloyl-CoA 4 CoA + 1,3-dihydroxy-''N''-methylacridone + 3 CO2 Thus, the two substrates of this enzyme are
malonyl-CoA Malonyl-CoA is a coenzyme A derivative of malonic acid. Functions It plays a key role in chain elongation in fatty acid biosynthesis and polyketide biosynthesis. Fatty acid biosynthesis Malonyl-CoA provides 2-carbon units to fatty acids and commi ...
and ''N''-methylanthraniloyl-CoA, whereas its three products are CoA, 1,3-dihydroxy-''N''-methylacridone, and CO2.


Reactions

Acridine displays the reactions expected of an unsaturated ''N''-heterocycle. It undergoes ''N''-alkylation with alkyl iodides to form alkyl acridinium iodides, which are readily transformed by the action of alkaline
potassium ferricyanide Potassium ferricyanide is the chemical compound with the formula K3 e(CN)6 This bright red salt contains the octahedrally coordinated 3−.html" ;"title="e(CN)6sup>3−">e(CN)6sup>3− ion. It is soluble in water and its solution shows some g ...
to ''N''-alkyl acridones.


Basicity

Acridine and its homologues are weakly basic. Acridine is a photobase which has a ground state p''K''a of 5.1, similar to that of
pyridine Pyridine is a basic heterocyclic organic compound with the chemical formula . It is structurally related to benzene, with one methine group replaced by a nitrogen atom. It is a highly flammable, weakly alkaline, water-miscible liquid with a d ...
, and an excited state p''K''a of 10.6. It also shares properties with quinoline.


Reduction and oxidation

Acridines can be reduced to the 9,10-dihydroacridines, sometimes called leucoacridines. Reaction with
potassium cyanide Potassium cyanide is a compound with the formula KCN. This colorless crystalline salt, similar in appearance to sugar, is highly soluble in water. Most KCN is used in gold mining, organic synthesis, and electroplating. Smaller applications includ ...
gives the 9-cyano-9,10-dehydro derivative. On oxidation with potassium permanganate, it yields acridinic acid (C9H5N(CO2H)2) otherwise known as quinoline-1,2-dicarboxylic acid. Acridine is easily
oxidized Redox (reduction–oxidation, , ) is a type of chemical reaction in which the oxidation states of substrate change. Oxidation is the loss of electrons or an increase in the oxidation state, while reduction is the gain of electrons or a d ...
by
peroxymonosulfuric acid Peroxymonosulfuric acid, , also known as persulfuric acid, peroxysulfuric acid, or Caro's acid. In this acid, the S(VI) center adopts its characteristic tetrahedral geometry; the connectivity is indicated by the formula HO–O–S(O)2–OH. It is ...
to the acridine amine oxide. The carbon 9-position of acridine is activated for addition reactions.


Applications

Several
dye A dye is a colored substance that chemically bonds to the substrate to which it is being applied. This distinguishes dyes from pigments which do not chemically bind to the material they color. Dye is generally applied in an aqueous solution an ...
s and drugs feature the acridine skeleton. Many acridines, such as proflavine, also have antiseptic properties. Acridine and related derivatives (such as
amsacrine Amsacrine (synonyms: m-AMSA, acridinyl anisidide) is an antineoplastic agent. It has been used in acute lymphoblastic leukemia. Mechanism Its planar fused ring system can intercalate into the DNA of tumor cells, thereby altering the major and ...
) bind to DNA and
RNA Ribonucleic acid (RNA) is a polymeric molecule essential in various biological roles in coding, decoding, regulation and expression of genes. RNA and deoxyribonucleic acid ( DNA) are nucleic acids. Along with lipids, proteins, and carbohydra ...
due to their abilities to
intercalate Intercalation may refer to: *Intercalation (chemistry), insertion of a molecule (or ion) into layered solids such as graphite * Intercalation (timekeeping), insertion of a leap day, week or month into some calendar years to make the calendar foll ...
. Acridine orange (3,6-dimethylaminoacridine) is a
nucleic acid Nucleic acids are biopolymers, macromolecules, essential to all known forms of life. They are composed of nucleotides, which are the monomers made of three components: a 5-carbon sugar, a phosphate group and a nitrogenous base. The two main cl ...
-selective metachromatic
stain A stain is a discoloration that can be clearly distinguished from the surface, material, or medium it is found upon. They are caused by the chemical or physical interaction of two dissimilar materials. Accidental staining may make materials app ...
useful for cell cycle determination.


Dyes

At one time acridine dyes were commercially significant, but they are now uncommon because they are not
lightfast Lightfastness is a property of a colourant such as dye or pigment that describes its resistance to fading when exposed to light. Dyes and pigments are used for example for dyeing of fabrics, plastics or other materials and manufacturing paints or ...
. Acridine dyes are prepared by condensation of
1,3-diaminobenzene ''m''-Phenylenediamine, also called 1,3-diaminobenzene, is an organic compound with the formula C6H4(NH2)2. It is an isomer of ''o''-phenylenediamine and ''p''-phenylenediamine. This aromatic diamine is a colourless solid that appears as needle ...
derivatives. Illustrative is the reaction of
2,4-diaminotoluene 2,4-Diaminotoluene is an organic compound with the formula C6H3(NH2)2CH3. It is one isomer of six with this formula. It is a white solid although commercial samples are often yellow-tan. Preparation It is prepared by hydrogenation of 2,4-dinit ...
with acetaldehyde: 9-Phenylacridine is the parent base of chrysaniline or 3,6-diamino-9-phenylacridine, which is the chief constituent of the dyestuff phosphine (not to be confused with
phosphine Phosphine (IUPAC name: phosphane) is a colorless, flammable, highly toxic compound with the chemical formula , classed as a pnictogen hydride. Pure phosphine is odorless, but technical grade samples have a highly unpleasant odor like rotting ...
gas), a byproduct in the manufacture of
rosaniline Fuchsine (sometimes spelled fuchsin) or rosaniline hydrochloride is a magenta dye with chemical formula C20H19N3·HCl.
. Chrysaniline forms red-coloured salts, which dye
silk Silk is a natural protein fiber, some forms of which can be woven into textiles. The protein fiber of silk is composed mainly of fibroin and is produced by certain insect larvae to form cocoons. The best-known silk is obtained from the coc ...
and
wool Wool is the textile fibre obtained from sheep and other mammals, especially goats, rabbits, and camelids. The term may also refer to inorganic materials, such as mineral wool and glass wool, that have properties similar to animal wool. As ...
in a fine yellow; and the solutions of the salts are characterized by their fine yellowish-green fluorescence. Chrysaniline was synthesized by O. Fischer and G. Koerner by condensing ''o''-nitrobenzaldehyde with aniline, the resulting ''o''-nitro-''p''-diaminotriphenylmethane being reduced to the corresponding ''o''-amino compound, which on oxidation yields chrysaniline. Benzoflavin, an isomer of chrysaniline, is also a dyestuff, and has been prepared by K. Oehler from ''m''-phenylenediamine and
benzaldehyde Benzaldehyde (C6H5CHO) is an organic compound consisting of a benzene ring with a formyl substituent. It is the simplest aromatic aldehyde and one of the most industrially useful. It is a colorless liquid with a characteristic almond-like odor. ...
. These substances condense to form tetraaminotriphenylmethane, which, on heating with acids, loses ammonia and yields 3,6-diamino-9,10-dihydrophenylacridine, from which benzoflavin is obtained by oxidation. It is a yellow powder, soluble in hot water.


Molecular biology

Acridine is known to induce small insertions or deletions in nucleotide sequences, resulting in
frameshift mutations A frameshift mutation (also called a framing error or a reading frame shift) is a genetic mutation caused by indels ( insertions or deletions) of a number of nucleotides in a DNA sequence that is not divisible by three. Due to the triplet nature ...
. This compound was useful to identify the triplet nature of the genetic codes.


Structure

As established by
X-ray crystallography X-ray crystallography is the experimental science determining the atomic and molecular structure of a crystal, in which the crystalline structure causes a beam of incident X-rays to diffract into many specific directions. By measuring the angles ...
, acridine has been obtained in eight polymorphs. All feature very similar planar molecules with nearly identical bond lengths and bond distances.


Safety

Acridine is a skin irritant. Its (rats, oral) is 2,000 mg/kg and 500 mg/kg (mice, oral).


See also

*
Lucigenin Lucigenin is an aromatic compound used in areas which include chemiluminescence. Its chemical name is bis-''N''-methylacridinium nitrate. It exhibits a bluish-green fluorescence. It is used as a probe for superoxide anion in biology, for its ch ...
, a chemiluminescent compound derived from acridine


References


Literature

* * [review article dealing with physical properties of acridines, natural products possessing the acridine core, biologically active acridines, applications of acridines, new syntheses and reactions of acridines]


External links

* * Synthesis of acridone in ''Organic Syntheses'' 19:6; ''Coll. Vol.'' 2:1

from o-chlorobenzoic acid, ''o''-chlorobenzoic acid and aniline in a
Goldberg reaction Goldberg or Goldberger may refer to: Arts and entertainment * Goldberg Ensemble, a British string ensemble * ''Goldberg Variations'', a set of 30 keyboard variations by Johann Sebastian Bach * ''The Goldbergs (broadcast series)'', American radio ...
. * Synthesis of 9-aminoacridine in ''
Organic Syntheses ''Organic Syntheses'' is a peer-reviewed scientific journal that was established in 1921. It publishes detailed and checked procedures for the synthesis of organic compounds. A unique feature of the review process is that all of the data and ex ...
'' 22:5; ''Coll. Vol.'' 3:53

from ''N''-phenylanthranilic acid. {{Authority control Acridines, Simple aromatic rings