The somites (outdated term: primitive segments) are a set of bilaterally paired blocks of
paraxial mesoderm
Paraxial mesoderm, also known as presomitic or somitic mesoderm is the area of mesoderm in the neurulating embryo that flanks and forms simultaneously with the neural tube. The cells of this region give rise to somites, blocks of tissue runnin ...
that form in the
embryonic stage of
somitogenesis, along the head-to-tail axis in
segmented animals. In
vertebrate
Vertebrates () comprise all animal taxon, taxa within the subphylum Vertebrata () (chordates with vertebral column, backbones), including all mammals, birds, reptiles, amphibians, and fish. Vertebrates represent the overwhelming majority of the ...
s, somites subdivide into the
dermatomes,
myotomes
A myotome is the group of muscles that a single spinal nerve innervates. Similarly a dermatome is an area of skin that a single nerve innervates with sensory fibers. Myotomes are separated by myosepta (singular: myoseptum). In vertebrate embryo ...
,
sclerotomes and
syndetomes that give rise to the
vertebrae
The spinal column, a defining synapomorphy shared by nearly all vertebrates, Hagfish are believed to have secondarily lost their spinal column is a moderately flexible series of vertebrae (singular vertebra), each constituting a characteristi ...
of the
vertebral column
The vertebral column, also known as the backbone or spine, is part of the axial skeleton. The vertebral column is the defining characteristic of a vertebrate in which the notochord (a flexible rod of uniform composition) found in all chordate ...
,
rib cage
The rib cage, as an enclosure that comprises the ribs, vertebral column and sternum in the thorax of most vertebrates, protects vital organs such as the heart, lungs and great vessels.
The sternum, together known as the thoracic cage, is a semi ...
, part of the
occipital bone
The occipital bone () is a cranial dermal bone and the main bone of the occiput (back and lower part of the skull). It is trapezoidal in shape and curved on itself like a shallow dish. The occipital bone overlies the occipital lobes of the c ...
,
skeletal muscle
Skeletal muscles (commonly referred to as muscles) are organs of the vertebrate muscular system and typically are attached by tendons to bones of a skeleton. The muscle cells of skeletal muscles are much longer than in the other types of m ...
,
cartilage,
tendon
A tendon or sinew is a tough, high-tensile-strength band of dense fibrous connective tissue that connects muscle to bone. It is able to transmit the mechanical forces of muscle contraction to the skeletal system without sacrificing its ability ...
s, and
skin
Skin is the layer of usually soft, flexible outer tissue covering the body of a vertebrate animal, with three main functions: protection, regulation, and sensation.
Other cuticle, animal coverings, such as the arthropod exoskeleton, have diffe ...
(of the back).
The word ''somite'' is sometimes also used in place of the word ''
metamere''. In this definition, the somite is a
homologously-paired structure in an animal
body plan
A body plan, ( ), or ground plan is a set of morphological features common to many members of a phylum of animals. The vertebrates share one body plan, while invertebrates have many.
This term, usually applied to animals, envisages a "bluepri ...
, such as is visible in
annelids
The annelids (Annelida , from Latin ', "little ring"), also known as the segmented worms, are a large phylum, with over 22,000 extant species including ragworms, earthworms, and leeches. The species exist in and have adapted to various ecolo ...
and
arthropods
Arthropods (, (gen. ποδός)) are invertebrate animals with an exoskeleton, a segmented body, and paired jointed appendages. Arthropods form the phylum Arthropoda. They are distinguished by their jointed limbs and cuticle made of chitin, oft ...
.
Development
The
mesoderm
The mesoderm is the middle layer of the three germ layers that develops during gastrulation in the very early development of the embryo of most animals. The outer layer is the ectoderm, and the inner layer is the endoderm.Langman's Medical Emb ...
forms at the same time as the other two
germ layer
A germ layer is a primary layer of cells that forms during embryonic development. The three germ layers in vertebrates are particularly pronounced; however, all eumetazoans (animals that are sister taxa to the sponges) produce two or three pr ...
s, the
ectoderm
The ectoderm is one of the three primary germ layers formed in early embryonic development. It is the outermost layer, and is superficial to the mesoderm (the middle layer) and endoderm (the innermost layer). It emerges and originates from the o ...
and
endoderm. The mesoderm at either side of the neural tube is called
paraxial mesoderm
Paraxial mesoderm, also known as presomitic or somitic mesoderm is the area of mesoderm in the neurulating embryo that flanks and forms simultaneously with the neural tube. The cells of this region give rise to somites, blocks of tissue runnin ...
. It is distinct from the mesoderm underneath the neural tube which is called the
chordamesoderm that becomes the notochord. The paraxial mesoderm is initially called the “segmental plate” in the chick embryo or the “unsegmented mesoderm” in other vertebrates. As the
primitive streak regresses and neural folds gather (to eventually become the
neural tube
In the developing chordate (including vertebrates), the neural tube is the embryonic precursor to the central nervous system, which is made up of the brain and spinal cord. The neural groove gradually deepens as the neural fold become elevated, ...
), the paraxial mesoderm separates into blocks called somites.
Formation
The pre-somitic mesoderm commits to the somitic fate before mesoderm becomes capable of forming somites. The cells within each somite are specified based on their location within the somite. Additionally, they retain the ability to become any kind of somite-derived structure until relatively late in the process of
somitogenesis.
The development of the somites depends on a clock mechanism as described by the
clock and wavefront model. In one description of the model, oscillating
Notch
Notch may refer to:
* Notch (engineering), an indentation or slit in a material
* Nock (arrow), notch in the rearmost end of an arrow
* Markus Persson (born 1979), a Swedish game designer known by his online alias "Notch", best known for creatin ...
and
Wnt signals provide the clock. The wave is a gradient of the
FGF protein that is
rostral to
caudal
Caudal may refer to:
Anatomy
* Caudal (anatomical term) (from Latin ''cauda''; tail), used to describe how close something is to the trailing end of an organism
* Caudal artery, the portion of the dorsal aorta of a vertebrate that passes into the ...
(nose to tail gradient). Somites form one after the other down the length of the embryo from the head to the tail, with each new somite forming on the caudal (tail) side of the previous one.
The timing of the interval is not universal. Different species have different interval timing. In the
chick
Chick or chicks may refer to:
*Chick (young bird), a bird that has not yet reached adulthood
People
* Chick (nickname), a list of people
* Chick (surname), various people
* Chick McGee, stage name of radio personality Charles Dean Hayes (born 19 ...
embryo somites are formed every 90 minutes. In the
mouse
A mouse ( : mice) is a small rodent. Characteristically, mice are known to have a pointed snout, small rounded ears, a body-length scaly tail, and a high breeding rate. The best known mouse species is the common house mouse (''Mus musculus' ...
the interval is 2 hours.
For some species, the number of somites may be used to determine the stage of embryonic development more reliably than the number of hours post-fertilization because rate of development can be affected by temperature or other environmental factors. The somites appear on both sides of the
neural tube
In the developing chordate (including vertebrates), the neural tube is the embryonic precursor to the central nervous system, which is made up of the brain and spinal cord. The neural groove gradually deepens as the neural fold become elevated, ...
simultaneously. Experimental manipulation of the developing somites will not alter the rostral/caudal orientation of the somites, as the cell fates have been determined prior to somitogenesis. Somite formation can be induced by ''
Noggin''-secreting cells. The number of somites is species dependent and independent of embryo size (for example, if modified via surgery or genetic engineering). Chicken embryos have 50 somites; mice have 65, while snakes have 500.
As cells within the paraxial mesoderm begin to come together, they are termed
somitomeres, indicating a lack of complete separation between segments. The outer cells undergo a
mesenchymal–epithelial transition to form an
epithelium around each somite. The inner cells remain as
mesenchyme
Mesenchyme () is a type of loosely organized animal embryonic connective tissue of undifferentiated cells that give rise to most tissues, such as skin, blood or bone. The interactions between mesenchyme and epithelium help to form nearly every ...
.
Notch signalling
The ''Notch'' system, as part of the clock and wavefront model, forms the boundaries of the somites. ''
DLL1'' and ''
DLL3
Delta-like 3 (Drosophila), also known as DLL3, is a protein which in humans is encoded by the ''DLL3'' gene. Two transcript variants encoding distinct isoforms have been identified for this gene.
Function
This gene encodes a member of the delt ...
'' are ''Notch''
ligand
In coordination chemistry, a ligand is an ion or molecule ( functional group) that binds to a central metal atom to form a coordination complex. The bonding with the metal generally involves formal donation of one or more of the ligand's ele ...
s, mutations of which cause various defects. Notch regulates ''
HES1'', which sets up the caudal half of the somite. ''Notch'' activation turns on ''
LFNG'' which in turn inhibits the ''Notch'' receptor. ''Notch'' activation also turns on the ''
HES1 gene'' which inactivates ''LFNG'', re-enabling the ''Notch'' receptor, and thus accounting for the oscillating clock model. ''
MESP2'' induces the ''
EPHA4
EPH receptor A4 (ephrin type-A receptor 4) is a protein that in humans is encoded by the ''EPHA4'' gene.
This gene belongs to the ephrin receptor subfamily of the protein-tyrosine kinase family. EPH and EPH-related receptors have been implicated i ...
'' gene, which causes repulsive interaction that separates somites by causing segmentation. ''EPHA4'' is restricted to the boundaries of somites. ''
EPHB2
Ephrin type-B receptor 2 is a protein that in humans is encoded by the ''EPHB2'' gene.
Function
Ephrin receptors and their ligands, the ephrins, mediate numerous developmental processes, particularly in the nervous system. Based on their stru ...
'' is also important for boundaries.
Mesenchymal-epithelial transition
Fibronectin
Fibronectin is a high-molecular weight (~500-~600 kDa) glycoprotein of the extracellular matrix that binds to membrane-spanning receptor proteins called integrins. Fibronectin also binds to other extracellular matrix proteins such as collagen ...
and
N-cadherin
Cadherin-2 also known as Neural cadherin (N-cadherin), is a protein that in humans is encoded by the ''CDH2'' gene. CDH2 has also been designated as CD325 (cluster of differentiation 325).
Cadherin-2 is a transmembrane protein expressed in multip ...
are key to the
mesenchymal-epithelial transition process in the developing embryo. The process is probably regulated by paraxis and ''MESP2''. In turn, ''MESP2'' is regulated by ''Notch'' signaling. Paraxis is regulated by processes involving the
cytoskeleton
The cytoskeleton is a complex, dynamic network of interlinking protein filaments present in the cytoplasm of all cells, including those of bacteria and archaea. In eukaryotes, it extends from the cell nucleus to the cell membrane and is comp ...
.
Specification
The
Hox genes specify somites as a whole based on their position along the anterior-posterior axis through specifying the pre-somitic mesoderm before somitogenesis occurs. After somites are made, their identity as a whole has already been determined, as is shown by the fact that transplantation of somites from one region to a completely different region results in the formation of structures usually observed in the original region. In contrast, the cells within each somite retain plasticity (the ability to form any kind of structure) until relatively late in somitic development.
Derivatives
In the developing vertebrate
embryo
An embryo is an initial stage of development of a multicellular organism. In organisms that reproduce sexually, embryonic development is the part of the life cycle that begins just after fertilization of the female egg cell by the male sperm ...
, somites split to form dermatomes, skeletal muscle (myotomes),
tendon
A tendon or sinew is a tough, high-tensile-strength band of dense fibrous connective tissue that connects muscle to bone. It is able to transmit the mechanical forces of muscle contraction to the skeletal system without sacrificing its ability ...
s and cartilage (syndetomes)
and
bone
A bone is a rigid organ that constitutes part of the skeleton in most vertebrate animals. Bones protect the various other organs of the body, produce red and white blood cells, store minerals, provide structure and support for the body, an ...
(sclerotomes).
Because the sclerotome differentiates before the dermatome and the myotome, the term dermomyotome refers to the combined dermatome and myotome before they separate out.
Dermatome
The dermatome is the dorsal portion of the paraxial mesoderm somite which gives rise to the skin (
dermis). In the human embryo it arises in the third week of
embryogenesis
An embryo is an initial stage of development of a multicellular organism. In organisms that reproduce sexually, embryonic development is the part of the life cycle that begins just after fertilization of the female egg cell by the male sperm ...
.
It is formed when a dermomyotome (the remaining part of the somite left when the sclerotome migrates), splits to form the dermatome and the myotome.
The dermatomes contribute to the skin,
fat and
connective tissue
Connective tissue is one of the four primary types of animal tissue, along with epithelial tissue, muscle tissue, and nervous tissue. It develops from the mesenchyme derived from the mesoderm the middle embryonic germ layer. Connective tissue ...
of the
neck
The neck is the part of the body on many vertebrates that connects the head with the torso. The neck supports the weight of the head and protects the nerves that carry sensory and motor information from the brain down to the rest of the body. In ...
and of the trunk, though most of the skin is derived from
lateral plate mesoderm.
Myotome
The myotome is that part of a somite that forms the muscles of the animal.
Each myotome divides into an
epaxial part (''epimere''), at the back, and a
hypaxial part (''hypomere'') at the front.
The
myoblasts from the hypaxial division form the muscles of the thoracic and anterior abdominal walls. The epaxial muscle mass loses its segmental character to form the
extensor muscles of the neck and trunk of mammals.
In fishes, salamanders, caecilians, and reptiles, the body musculature remains segmented as in the embryo, though it often becomes folded and overlapping, with epaxial and hypaxial masses divided into several distinct muscle groups.
Sclerotome
The sclerotome (or cutis plate) forms the
vertebra
The spinal column, a defining synapomorphy shared by nearly all vertebrates, Hagfish are believed to have secondarily lost their spinal column is a moderately flexible series of vertebrae (singular vertebra), each constituting a characterist ...
e and the rib cartilage and part of the occipital bone; the myotome forms the
musculature of the back, the ribs and the limbs; the syndetome forms the tendons and the dermatome forms the
skin
Skin is the layer of usually soft, flexible outer tissue covering the body of a vertebrate animal, with three main functions: protection, regulation, and sensation.
Other cuticle, animal coverings, such as the arthropod exoskeleton, have diffe ...
on the back. In addition, the somites specify the migration paths of
neural crest
Neural crest cells are a temporary group of cells unique to vertebrates that arise from the embryonic ectoderm germ layer, and in turn give rise to a diverse cell lineage—including melanocytes, craniofacial cartilage and bone, smooth muscle, ...
cells and the
axon
An axon (from Greek ἄξων ''áxōn'', axis), or nerve fiber (or nerve fibre: see spelling differences), is a long, slender projection of a nerve cell, or neuron, in vertebrates, that typically conducts electrical impulses known as action ...
s of
spinal nerves. From their initial location within the somite, the sclerotome cells migrate medially towards the
notochord
In anatomy, the notochord is a flexible rod which is similar in structure to the stiffer cartilage. If a species has a notochord at any stage of its life cycle (along with 4 other features), it is, by definition, a chordate. The notochord cons ...
. These cells meet the sclerotome cells from the other side to form the vertebral body. The lower half of one sclerotome fuses with the upper half of the adjacent one to form each vertebral body.
[
Walker, Warren F., Jr. (1987) ''Functional Anatomy of the Vertebrate'' San Francisco: Saunders College Publishing.] From this vertebral body, sclerotome cells move dorsally and surround the developing
spinal cord
The spinal cord is a long, thin, tubular structure made up of nervous tissue, which extends from the medulla oblongata in the brainstem to the lumbar region of the vertebral column (backbone). The backbone encloses the central canal of the spin ...
, forming the
vertebral arch. Other cells move distally to the costal processes of
thoracic vertebrae
In vertebrates, thoracic vertebrae compose the middle segment of the vertebral column, between the cervical vertebrae and the lumbar vertebrae. In humans, there are twelve thoracic vertebrae and they are intermediate in size between the cervical ...
to form the ribs.
In arthropods
In
crustacean
Crustaceans (Crustacea, ) form a large, diverse arthropod taxon which includes such animals as decapods, seed shrimp, branchiopods, fish lice, krill, remipedes, isopods, barnacles, copepods, amphipods and mantis shrimp. The crustacean gro ...
development, a somite is a segment of the hypothetical primitive crustacean body plan. In current crustaceans, several of those somites may be fused.
See also
*
Developmental biology
Developmental biology is the study of the process by which animals and plants grow and develop. Developmental biology also encompasses the biology of regeneration, asexual reproduction, metamorphosis, and the growth and differentiation of ste ...
References
External links
*
{{Authority control
Embryology