Polydnavirus
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A polydnavirus (PDV) is a member of the
family Family (from la, familia) is a Social group, group of people related either by consanguinity (by recognized birth) or Affinity (law), affinity (by marriage or other relationship). The purpose of the family is to maintain the well-being of its ...
''Polydnaviridae'' of
insect Insects (from Latin ') are pancrustacean hexapod invertebrates of the class Insecta. They are the largest group within the arthropod phylum. Insects have a chitinous exoskeleton, a three-part body ( head, thorax and abdomen), three pairs ...
virus A virus is a submicroscopic infectious agent that replicates only inside the living cells of an organism. Viruses infect all life forms, from animals and plants to microorganisms, including bacteria and archaea. Since Dmitri Ivanovsky's 1 ...
es. There are two genera in the family: ''
Bracovirus ''Bracovirus'' is a genus of viruses, in the family ''Polydnaviridae''. Bracoviruses are an ancient symbiotic virus contained in parasitic braconid wasps that evolved off of the ''nudivirus'' about 190 million years ago and has been evolving at ...
'' and ''
Ichnovirus ''Ichnovirus'' is a genus of viruses, in the family ''Polydnaviridae''. Parasitoid wasps serve as hosts, and these wasps are themselves parasitoids of Lepidoptera. There are 21 species in this genus. Taxonomy The genus contains the following 21 ...
''. Polydnaviruses form a
symbiotic relationship Symbiosis (from Greek , , "living together", from , , "together", and , bíōsis, "living") is any type of a close and long-term biological interaction between two different biological organisms, be it mutualistic, commensalistic, or parasit ...
with
parasitoid wasps Parasitoid wasps are a large group of hymenopteran superfamilies, with all but the wood wasps (Orussoidea) being in the wasp-waisted Apocrita. As parasitoids, they lay their eggs on or in the bodies of other arthropods, sooner or later causi ...
; (
ichnovirus ''Ichnovirus'' is a genus of viruses, in the family ''Polydnaviridae''. Parasitoid wasps serve as hosts, and these wasps are themselves parasitoids of Lepidoptera. There are 21 species in this genus. Taxonomy The genus contains the following 21 ...
es (IV) occur in ichneumonid wasps and
bracovirus ''Bracovirus'' is a genus of viruses, in the family ''Polydnaviridae''. Bracoviruses are an ancient symbiotic virus contained in parasitic braconid wasps that evolved off of the ''nudivirus'' about 190 million years ago and has been evolving at ...
es (BV) in
braconid wasps The Braconidae are a family of parasitoid wasps. After the closely related Ichneumonidae, braconids make up the second-largest family in the order Hymenoptera, with about 17,000 recognized species and many thousands more undescribed. One analysis ...
). The larvae of wasps in both of those groups are themselves parasitic on
Lepidoptera Lepidoptera ( ) is an order (biology), order of insects that includes butterfly, butterflies and moths (both are called lepidopterans). About 180,000 species of the Lepidoptera are described, in 126 Family (biology), families and 46 Taxonomic r ...
(moths and butterflies), and the polydnaviruses are important in circumventing the immune response of their parasitized hosts. Little or no
sequence homology Sequence homology is the biological homology between DNA, RNA, or protein sequences, defined in terms of shared ancestry in the evolutionary history of life. Two segments of DNA can have shared ancestry because of three phenomena: either a spe ...
exists between BV and IV, suggesting that the two genera have been evolving independently for a long time.


Taxonomy

The genus contains the following genera: * ''
Bracovirus ''Bracovirus'' is a genus of viruses, in the family ''Polydnaviridae''. Bracoviruses are an ancient symbiotic virus contained in parasitic braconid wasps that evolved off of the ''nudivirus'' about 190 million years ago and has been evolving at ...
'' * ''
Ichnovirus ''Ichnovirus'' is a genus of viruses, in the family ''Polydnaviridae''. Parasitoid wasps serve as hosts, and these wasps are themselves parasitoids of Lepidoptera. There are 21 species in this genus. Taxonomy The genus contains the following 21 ...
''


Structure

Viruses in ''Polydnaviridae'' are enveloped, with
prolate A spheroid, also known as an ellipsoid of revolution or rotational ellipsoid, is a quadric surface obtained by rotating an ellipse about one of its principal axes; in other words, an ellipsoid with two equal semi-diameters. A spheroid has circu ...
ellipsoid An ellipsoid is a surface that may be obtained from a sphere by deforming it by means of directional scalings, or more generally, of an affine transformation. An ellipsoid is a quadric surface;  that is, a surface that may be defined as the ...
and cylindrical geometries.
Genomes In the fields of molecular biology and genetics, a genome is all the genetic information of an organism. It consists of nucleotide sequences of DNA (or RNA in RNA viruses). The nuclear genome includes protein-coding genes and non-coding gen ...
are circular and segmented, composed of multiple segments of double-stranded,
superhelical DNA DNA supercoiling refers to the amount of twist in a particular DNA strand, which determines the amount of strain on it. A given strand may be "positively supercoiled" or "negatively supercoiled" (more or less tightly wound). The amount of a str ...
packaged in
capsid A capsid is the protein shell of a virus, enclosing its genetic material. It consists of several oligomeric (repeating) structural subunits made of protein called protomers. The observable 3-dimensional morphological subunits, which may or may ...
proteins Proteins are large biomolecules and macromolecules that comprise one or more long chains of amino acid residues. Proteins perform a vast array of functions within organisms, including catalysing metabolic reactions, DNA replication, respo ...
. They are around 2.0–31kb in length.


Life cycle

Viral replication is nuclear. DNA-templated
transcription Transcription refers to the process of converting sounds (voice, music etc.) into letters or musical notes, or producing a copy of something in another medium, including: Genetics * Transcription (biology), the copying of DNA into RNA, the fir ...
is the method of transcription. The virus exits the host cell by nuclear pore export. Parasitoid wasps serve as hosts for the virus, and Lepidoptera serve as hosts for these wasps. The female wasp injects one or more eggs into its host along with a quantity of virus. The virus and wasp are in a mutualistic
symbiotic Symbiosis (from Greek , , "living together", from , , "together", and , bíōsis, "living") is any type of a close and long-term biological interaction between two different biological organisms, be it mutualistic, commensalistic, or parasit ...
relationship: expression of viral genes prevents the wasp's host's immune system from killing the wasp's injected egg and causes other physiological alterations that ultimately cause the parasitized host to die. Transmission routes are parental.


Biology

These viruses are part of a unique biological system consisting of an endoparasitic wasp (
parasitoid In evolutionary ecology, a parasitoid is an organism that lives in close association with its host (biology), host at the host's expense, eventually resulting in the death of the host. Parasitoidism is one of six major evolutionarily stable str ...
), a host (usually
lepidoptera Lepidoptera ( ) is an order (biology), order of insects that includes butterfly, butterflies and moths (both are called lepidopterans). About 180,000 species of the Lepidoptera are described, in 126 Family (biology), families and 46 Taxonomic r ...
n) larva, and the virus. The full
genome In the fields of molecular biology and genetics, a genome is all the genetic information of an organism. It consists of nucleotide sequences of DNA (or RNA in RNA viruses). The nuclear genome includes protein-coding genes and non-coding ge ...
of the virus is
endogenous Endogenous substances and processes are those that originate from within a living system such as an organism, tissue, or cell. In contrast, exogenous substances and processes are those that originate from outside of an organism. For example, es ...
, dispersed among the genome of the wasp. The virus only replicates in a particular part of the ovary, called the calyx, of pupal and adult female wasps. The virus is injected along with the wasp egg into the body cavity of a lepidopteran host caterpillar and infects cells of the caterpillar. The infection does not lead to replication of new viruses; rather, it affects the caterpillar's
immune system The immune system is a network of biological processes that protects an organism from diseases. It detects and responds to a wide variety of pathogens, from viruses to parasitic worms, as well as cancer cells and objects such as wood splinte ...
, as the virion carries virulence genes instead of viral replication genes. It can be considered a type of
viral vector Viral vectors are tools commonly used by molecular biologists to deliver genetic material into cells. This process can be performed inside a living organism (''in vivo'') or in cell culture (''in vitro''). Viruses have evolved specialized molecul ...
. Without the virus infection,
phagocytic Phagocytosis () is the process by which a cell uses its plasma membrane to engulf a large particle (≥ 0.5 μm), giving rise to an internal compartment called the phagosome. It is one type of endocytosis. A cell that performs phagocytosis is ...
hemocytes A blood cell, also called a hematopoietic cell, hemocyte, or hematocyte, is a cell produced through hematopoiesis and found mainly in the blood. Major types of blood cells include red blood cells (erythrocytes), white blood cells (leukocytes), a ...
(blood cells) will encapsulate and kill the wasp egg and larvae, but the immune suppression caused by the virus allows survival of the wasp egg and larvae, leading to hatching and complete development of the immature wasp in the caterpillar. Additionally, genes expressed from the polydnavirus in the parasitised host alter host development and metabolism to be beneficial for the growth and survival of the parasitoid larva.Webb, B. A. (1998). ''Polydnavirus biology, genome structure, and evolution''. In Miller, L.K., Ball, L.A., Eds. ''The Insect Viruses''. Plenum Publishing Corporation. pp. 105–139.


Potential carrier subfamilies

*
Ichneumonoidea The superfamily Ichneumonoidea contains one extinct and three extant families, including the two largest families within Hymenoptera: Ichneumonidae and Braconidae. The group is thought to contain as many as 100,000 species, many of which have not ...
**
Braconidae The Braconidae are a family of parasitoid wasps. After the closely related Ichneumonidae, braconids make up the second-largest family in the order Hymenoptera, with about 17,000 recognized species and many thousands more undescribed. One analysis ...
***
Microgastrinae Microgastrinae is a subfamily of braconid wasps, encompassing almost 3,000 described species, with an estimated 30,000–50,000 total species. This makes it one of the richest subfamilies with the most species of parasitoid wasps. Genera These 8 ...
*** Miracinae *** Cheloninae *** Cardiochilinae *** Mendeselinae *** Khoikhoiinae **
Ichneumonidae The Ichneumonidae, also known as the ichneumon wasps, Darwin wasps, or ichneumonids, are a family (biology), family of parasitoid wasps of the insect order Hymenoptera. They are one of the most diverse groups within the Hymenoptera with roughly 2 ...
***
Campopleginae Campopleginae is a large subfamily of the parasitoid wasp family Ichneumonidae with a world-wide distribution. Species in this subfamily have been used in the biological control of the alfalfa weevil, clover weevil, various species of ''Heliothis ...
***
Banchinae Banchinae is a subfamily of ichneumonid parasitoid wasps containing about 1,500 species; the genera '' Glypta'' and '' Lissonota'' are very large. The three tribes ( Banchini, Glyptini and Atrophini) are all distributed worldwide. In older t ...


Characteristics

Both genera of PDV share certain characteristics: *the virus particles of each contain multiple segments of dsDNA (double-strand, or "normal" DNA, as contrasted with positive- or negative-sense single-strand DNA or RNA, as found in some other viruses) with each segment containing only part of the full genome (much like chromosomes in eukaryotic organisms) *the genome of the virus has eukaryotic characteristics such as the presence of
introns An intron is any nucleotide sequence within a gene that is not expressed or operative in the final RNA product. The word ''intron'' is derived from the term ''intragenic region'', i.e. a region inside a gene."The notion of the cistron .e., gene. ...
(common for insect genes but rare for viruses) and a low coding density *the genome of each virus is integrated into the host wasp genome *the genome is organized in several multiple-member genes families (which differ between Bracoviruses and Ichnoviruses) *the virus particles are only produced in specific cell types in the female wasp's reproductive organs The morphologies of the two genera are different when observed by electron microscopy. Ichnoviruses tend to be ovoid while bracoviruses are short rods. The virions of Bracoviruses are released by
cell lysis Lysis ( ) is the breaking down of the membrane of a cell, often by viral, enzymic, or osmotic (that is, "lytic" ) mechanisms that compromise its integrity. A fluid containing the contents of lysed cells is called a ''lysate''. In molecular bio ...
; the virions of Ichnoviruses are released by budding.


Evolution

Nucleic acid Nucleic acids are biopolymers, macromolecules, essential to all known forms of life. They are composed of nucleotides, which are the monomers made of three components: a 5-carbon sugar, a phosphate group and a nitrogenous base. The two main cl ...
analysis suggests a very long association of the viruses with the wasps (estimated 73.7 million years ± 10 million).


Older wasp-derived theory

Two proposals have been advanced for how the wasp/virus association developed. The first suggests that the virus is derived from wasp genes. Many parasitoids that do not use PDVs inject proteins that provide many of the same functions, that is, a suppression of the immune response to the parasite egg. In this model, the braconid and ichneumonid wasps packaged genes for these functions into the viruses—essentially creating a gene-transfer system that results in the caterpillar producing the immune-suppressing factors. In this scenario, the PDV structural proteins (capsids) were probably "borrowed" from existing viruses.


Current endogenous virus theory

The alternative proposal suggests that ancestral wasps developed a beneficial association with an existing virus that eventually led to the integration of the virus into the wasp's genome. Following integration, the genes responsible for virus replication and the capsids were (eventually) no longer included in the PDV genome. This hypothesis is supported by the distinct morphology differences between IV and BV, suggesting different ancestral viruses for the two genera. BV has likely evolved from a
nudivirus Nudiviruses are a family of animal viruses that constitute the family ''Nudiviridae''. Insects and marine crustaceans serve as natural hosts. There are 11 species in this family, assigned to 4 genera. Diseases associated with this family include: ...
, specifically a betanudivirus, ~. IV has a less clear origin: although earlier reports finds a protein p44/p53 with structural similarities to
ascovirus ''Ascoviridae'' is a family of double strand DNA viruses that infect primarily invertebrates, mainly noctuids and spodoptera species; it contains two genera, ''Ascovirus'', which contains three species, and ''Toursvirus'' with a single species ' ...
, the link was not confirmed in later studies. As a result, the current opinion is that IV originated from a yet-unidentified novel viral family, with weak link to the
NCLDV ''Nucleocytoviricota'' is a phylum of viruses. Members of the phylum are also known as the nucleocytoplasmic large DNA viruses (NCLDV), which serves as the basis of the name of the phylum with the suffix - for virus phylum. These viruses are refe ...
s. In either case, both genera were formed through a single integration event in their respective wasp lineages. The two groups of viruses in the family are not in fact phylogenetically related suggesting that this taxon may need revision.


Effect on host immunity

In the host, several mechanisms of the insect immune system can be triggered when the wasp lays its eggs and when the parasitic wasp is developing. When a large body (wasp egg or small particle used experimentally) is introduced into an insect's body, the classic immune reaction is the encapsulation by the hematocytes. An encapsulated body can also be melanised in order to asphyxiate it, thanks to another type of hemocyte, which uses the
phenoloxidase Polyphenol oxidase (PPO; also polyphenol oxidase i, chloroplastic), an enzyme involved in fruit browning, is a tetramer that contains four atoms of copper per molecule. PPO may accept monophenols and/or ''o''-diphenols as substrates. The ...
pathway to produce melanin. Small particles can be phagocytosed, and macrophage cells can then be also melanised in a nodule. Finally, insects can also respond with production of antiviral peptides. PolyDNAvirus protect the hymenopteran larvae from the host immune system, acting at different levels. *First they can disable or destroy hematocytes. The polyDNAvirus associated with ''Cotesia rubecula'', code for a protein CrV1 that denatures actin filaments in hematocytes, so those cells become less able to move and adhere to the larvae. ''Microplitis demolitor'' Bracovirus (MdBV) induce apoptosis of hematocytes, thanks to its gene PTP-H2. It also decreases the adhesion capacity of hematocytes, thanks to its gene Glc1.8. The gene also inhibits phagocytosis. *PolyDNAvirus can also act on melanisation, MdBV interferes with the production of
phenoloxidase Polyphenol oxidase (PPO; also polyphenol oxidase i, chloroplastic), an enzyme involved in fruit browning, is a tetramer that contains four atoms of copper per molecule. PPO may accept monophenols and/or ''o''-diphenols as substrates. The ...
. *Finally, polyDNAvirus can also produce viral
ankyrin Ankyrins are a family of proteins that mediate the attachment of integral membrane proteins to the spectrin-actin based membrane cytoskeleton. Ankyrins have binding sites for the beta subunit of spectrin and at least 12 families of integral mem ...
s, that interfere with production of antiviral peptides. In some Ichnoviruses, Vankyrin can also prevent apoptosis, the extreme reaction of a cell to block viral propagation. *The Ichnoviruses produce some proteins called vinnexins which have been recognized as homologous to the
innexins Innexins are transmembrane proteins that form gap junctions in invertebrates. Gap junctions are composed of membrane proteins that form a channel permeable to ions and small molecules connecting the cytoplasm of adjacent cells. Although gap junct ...
of insects. They are responsible for the encoding of the structural units of the gap-junctions. These proteins may alter the intercellular communication which could explain the disruption of the
encapsidation {{Short pages monitor