Bioinformatics software

The list of

bioinformatics Bioinformatics () is an interdisciplinary field that develops methods and software tools for understanding biological data, in particular when the data sets are large and complex. As an interdisciplinary field of science, bioinformatics combin ...

software tools can be split up according to the license used: * List of proprietary bioinformatics software *

List of open-source bioinformatics software This is a list of computer software which is made for bioinformatics and released under open-source software licenses with articles in Wikipedia. See also * List of sequence alignment software * List of open-source healthcare software * Lis ...

Alternatively, here is a categorization according to the respective bioinformatics subfield specialized on: *Sequence analysis software **

List of sequence alignment software This list of sequence alignment software is a compilation of software tools and web portals used in pairwise sequence alignment and multiple sequence alignment. See structural alignment software for structural alignment of proteins. Database searc ...

List of alignment visualization software This page is a subsection of the list of sequence alignment software. Multiple alignment visualization tools typically serve four purposes: * Aid general understanding of large-scale DNA or protein alignments * Visualize alignments for figures and ...

Alignment-free sequence analysis In bioinformatics, alignment-free sequence analysis approaches to molecular sequence and structure data provide alternatives over alignment-based approaches. The emergence and need for the analysis of different types of data generated through biolo ...

De novo sequence assemblers De novo sequence assemblers are a type of program that assembles short nucleotide sequences into longer ones without the use of a reference genome. These are most commonly used in bioinformatic studies to assemble genomes or transcriptomes. Two com ...

List of gene prediction software This is a list of software tools and web portals used for gene prediction. See also * Gene prediction * List of RNA structure prediction software * Comparison of software for molecular mechanics modeling References {{Reflist, 2 Predicti ...

** List of disorder prediction software ** List of Protein subcellular localization prediction tools ** List of phylogenetics software ** List of phylogenetic tree visualization software ** :Metagenomics_software *Structural biology software **

List of molecular graphics systems This is a list of notable software systems that are used for visualizing macromolecules. Key The tables below indicate which types of data can be visualized in each system: See also * Biological data visualization * Comparison of nucleic ...

List of protein-ligand docking software The number of notable protein-ligand docking programs currently available is high and has been steadily increasing over the last decades. The following list presents an overview of the most common notable programs, listed alphabetically, with ...

** List of RNA structure prediction software ** List of software for protein model error verification **

List of protein secondary structure prediction programs List of notable protein secondary structure prediction programs See also * List of protein structure prediction software * Protein structure prediction Protein structure prediction is the inference of the three-dimensional structure of a pro ...

List of protein structure prediction software This list of protein structure prediction software summarizes notable used software tools in protein structure prediction, including homology modeling, protein threading Protein threading, also known as fold recognition, is a method of protein m ...

** :Molecular dynamics software **

Structural alignment software This list of structural comparison and alignment software is a compilation of software tools and web portals used in pairwise or multiple structural comparison and structural alignment. Structural comparison and alignment Key map: * Class: :* Cα ...

*Other **

Bioinformatics workflow management system A bioinformatics workflow management system is a specialized form of workflow management system designed specifically to compose and execute a series of computational or data manipulation steps, or a workflow, that relate to bioinformatics. Ther ...

** List of genetic engineering software **

List of systems biology visualization software Online software Applications References {{Reflist Systems A system is a group of interacting or interrelated elements that act according to a set of rules to form a unified whole. A system, surrounded and influenced by its environment, ...

List of systems biology modelling software Systems biology relies heavily on building mathematical models to help understand and make predictions of biological processes. Specialized software to assist in building models has been developed since the arrival of the first digital computers. Th ...

** 2D gel analysis software ** List of mass spectrometry software