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List Of Molecular Graphics Systems
This is a list of notable software systems that are used for visualizing macromolecules. Key The tables below indicate which types of data can be visualized in each system: See also * Biological data visualization * Comparison of nucleic acid simulation software * Comparison of software for molecular mechanics modeling * List of microscopy visualization systems * List of open-source bioinformatics software * Molecular graphics * Molecule editor A molecule editor is a computer program for creating and modifying representations of chemical structures. Molecule editors can manipulate chemical structure representations in either a simulated two-dimensional space or three-dimensional space, v ... References External links * A rather detailed, objective, and technical assessment of about 20 tools. * * * {{Chemistry software Chemistry software molecular graphics systems Molecular modelling ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Amira (software)
Amira (pronounce: Ah-meer-ah) is a software platform for 3D and 4D data visualization, processing, and analysis. It is being actively developed by Thermo Fisher Scientific in collaboration with the Zuse Institute Berlin (ZIB), and commercially distributed by Thermo Fisher Scientific. Overview Amira is an extendable software system for scientific visualization, data analysis, and presentation of 3D and 4D data. It is used by thousands of researchers and engineers in academia and industry around the world. Its flexible user interface and modular architecture make it a universal tool for processing and analysis of data from various modalities; e.g. micro-CT, PET, Ultrasound. Its ever-expanding functionality has made it a versatile data analysis and visualization solution, applicable to and being used in many fields, such as microscopy in biology and materials science, molecular biology, quantum physics, astrophysics, computational fluid dynamics (CFD), finite element modeling (FE ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
BALL
A ball is a round object (usually spherical, but can sometimes be ovoid) with several uses. It is used in ball games, where the play of the game follows the state of the ball as it is hit, kicked or thrown by players. Balls can also be used for simpler activities, such as catch or juggling. Balls made from hard-wearing materials are used in engineering applications to provide very low friction bearings, known as ball bearings. Black-powder weapons use stone and metal balls as projectiles. Although many types of balls are today made from rubber, this form was unknown outside the Americas until after the voyages of Columbus. The Spanish were the first Europeans to see the bouncing rubber balls (although solid and not inflated) which were employed most notably in the Mesoamerican ballgame. Balls used in various sports in other parts of the world prior to Columbus were made from other materials such as animal bladders or skins, stuffed with various materials. As balls are one o ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Microsoft Windows
Windows is a group of several proprietary graphical operating system families developed and marketed by Microsoft. Each family caters to a certain sector of the computing industry. For example, Windows NT for consumers, Windows Server for servers, and Windows IoT for embedded systems. Defunct Windows families include Windows 9x, Windows Mobile, and Windows Phone. The first version of Windows was released on November 20, 1985, as a graphical operating system shell for MS-DOS in response to the growing interest in graphical user interfaces (GUIs). Windows is the most popular desktop operating system in the world, with 75% market share , according to StatCounter. However, Windows is not the most used operating system when including both mobile and desktop OSes, due to Android's massive growth. , the most recent version of Windows is Windows 11 for consumer PCs and tablets, Windows 11 Enterprise for corporations, and Windows Server 2022 for servers. Genealogy By marketing ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Browser Plugin
A browser extension is a small software module for customizing a web browser. Browsers typically allow a variety of extensions, including user interface modifications, HTTP cookie, cookie management, ad blocking, and the custom userscript, scripting and Style sheet (web development), styling of web pages. Plug-ins Browser plug-in (computing), plug-ins are a separate type of module. The main difference is that extensions are distributed as source code, while plug-ins are distributed as executables (i.e. object code). Plug-ins are no longer supported by the major browsers, but extensions are widely used. The most popular browser, Google Chrome, has over 100,000 extensions available but stopped supporting plug-ins in 2020. History Internet Explorer was the first major browser to support extensions, with the release of Internet Explorer 4, version 4 in 1999. Firefox has supported extensions since its launch in 2004. Opera (web browser), Opera began supporting extensions in 2009, and bo ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
MDL Chime
MDL ''Chime'' was a free plugin used by web browsers to display the three-dimensional structures of molecules. and was based on the RasMol code. Chime was used by a wide range of biochemistry web sites for the visualization of macromolecules, many of which were linked to the ''World Index of Molecular Visualization Resources'' MolVisIndex.Org. Chime was also used until 2006 at the Protein Data Bank to examine structures stored there. Although available in 1996 in both Windows 95 and classic Mac OS versions for both Netscape and Internet Explorer browsers, development of Chime did not follow the move to Mac OS X for the Mac and support for Windows-based browsers other than Internet Explorer was limited (although it works well in Mozilla Firefox). One significant feature added in 1997 was the ability to display spectroscopic data in the form of the IUPAC JCAMP-DX protocols. Apart from this, most subsequent updates were for the installation package to follow the development of Wi ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Standalone Program
A stand-alone program, also known as a freestanding program, is a computer program that does not load any external module, library function or program and that is designed to boot with the bootstrap procedure of the target processor – it runs on bare metal. In early computers like the ENIAC without the concept of an operating system, standalone programs were the only way to run a computer. Standalone programs are usually written in or compiled to the assembly language for the specific hardware. Later standalone programs typically were provided for utility functions such as disk formatting. Also, computers with very limited memory used standalone programs, i.e. most computers until the mid-1950s, and later still embedded processors. Standalone programs are now mainly limited to SoC's or Microcontrollers (where battery life, price, and data space are at premiums) [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Applet
In computing, an applet is any small application that performs one specific task that runs within the scope of a dedicated widget engine or a larger program, often as a plug-in. The term is frequently used to refer to a Java applet, a program written in the Java programming language that is designed to be placed on a web page. Applets are typical examples of transient and auxiliary applications that don't monopolize the user's attention. Applets are not full-featured application programs, and are intended to be easily accessible. History The word ''applet'' was first used in 1990 in ''PC Magazine''. However, the concept of an applet, or more broadly a small interpreted program downloaded and executed by the user, dates at least to RFC 5 (1969) by Jeff Rulifson, which described the Decode-Encode Language, which was designed to allow remote use of the oN-Line System over ARPANET, by downloading small programs to enhance the interaction. This has been specifically credited as ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Java Platform
Java is a set of computer software and specifications developed by James Gosling at Sun Microsystems, which was later acquired by the Oracle Corporation, that provides a system for developing application software and deploying it in a cross-platform computing environment. Java is used in a wide variety of computing platforms from embedded devices and mobile phones to enterprise servers and supercomputers. Java applets, which are less common than standalone Java applications, were commonly run in secure, sandboxed environments to provide many features of native applications through being embedded in HTML pages. Writing in the Java programming language is the primary way to produce code that will be deployed as byte code in a Java virtual machine (JVM); byte code compilers are also available for other languages, including Ada, JavaScript, Python, and Ruby. In addition, several languages have been designed to run natively on the JVM, including Clojure, Groovy, and Scala. J ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Jmol
Jmol is computer software for molecular modelling chemical structures in 3-dimensions. Jmol returns a 3D representation of a molecule that may be used as a teaching tool, or for research e.g., in chemistry and biochemistry. It is written in the programming language Java, so it can run on the operating systems Windows, macOS, Linux, and Unix, if Java is installed. It is free and open-source software released under a GNU Lesser General Public License (LGPL) version 2.0. A standalone application and a software development kit (SDK) exist that can be integrated into other Java applications, such as Bioclipse and Taverna. A popular feature is an applet that can be integrated into web pages to display molecules in a variety of ways. For example, molecules can be displayed as ball-and-stick models, space-filling models, ribbon diagrams, etc. Jmol supports a wide range of chemical file formats, including Protein Data Bank (pdb), Crystallographic Information File (cif), MDL Molfile (mol ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Gabedit
Gabedit is a graphical user interface to GAMESS (US), Gaussian, MOLCAS, MOLPRO, MPQC, OpenMopac, PC GAMESS, ORCA and Q-Chem computational chemistry packages. Major features * Builds molecules by atom, ring, group, amino acid and nucleoside. * Creates an input file for computational chemistry packages. * Reads output from the ab initio packages, and supports a number of other formats. * Displays molecular orbitals or electron density as contour plots or 3D grid plots and output to a number of graphical formats. * Animates molecular vibrations, contours, isosurfaces and rotation. See also * List of molecular graphics systems * PC GAMESS * ORCA * Quantum chemistry computer programs * SAMSON Samson (; , '' he, Šīmšōn, label= none'', "man of the sun") was the last of the judges of the ancient Israelites mentioned in the Book of Judges (chapters 13 to 16) and one of the last leaders who "judged" Israel before the institution o ... External links Gabedit official ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Coot (software)
The program Coot (Crystallographic Object-Oriented Toolkit) is used to display and manipulate atomic models of macromolecules, typically of proteins or nucleic acids, using 3D computer graphics. It is primarily focused on building and validation of atomic models into three-dimensional electron density maps obtained by X-ray crystallography methods, although it has also been applied to data from electron microscopy. Overview Coot displays electron density maps and atomic models and allows model manipulations such as idealization, real space refinement, manual rotation/translation, rigid-body fitting, ligand search, solvation, mutations, rotamers, and Ramachandran idealization. The software is designed to be easy-to-learn for novice users, achieved by ensuring that tools for common tasks are 'discoverable' through familiar user interface elements (menus and toolbars), or by intuitive behaviour (mouse controls). Recent developments have enhanced the usability of the software for exp ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
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