Azomethine Ylide
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Azomethine ylides are nitrogen-based
1,3-dipole In organic chemistry, a 1,3-dipolar compound or 1,3-dipole is a dipolar compound with delocalized electrons and a separation of charge over three atoms. They are reactants in 1,3-dipolar cycloadditions. The dipole has at least one resonance s ...
s, consisting of an
iminium In organic chemistry, an iminium cation is a polyatomic ion with the general structure . They are common in synthetic chemistry and biology. Structure Iminium cations adopt alkene-like geometries. The central C=N unit is nearly coplanar with al ...
ion next to a carbanion. They are used in 1,3-dipolar cycloaddition reactions to form five-membered
heterocycle A heterocyclic compound or ring structure is a cyclic compound that has atoms of at least two different elements as members of its ring(s). Heterocyclic chemistry is the branch of organic chemistry dealing with the synthesis, properties, and ...
s, including pyrrolidines and
pyrroline Pyrrolines, also known under the name dihydropyrroles, are three different heterocyclic organic chemical compounds that differ in the position of the double bond. Pyrrolines are formally derived from the aromate pyrrole by hydrogenation. 1-Pyrrolin ...
s. These reactions are highly stereo- and
regioselective In chemistry, regioselectivity is the preference of chemical bonding or breaking in one direction over all other possible directions. It can often apply to which of many possible positions a reagent will affect, such as which proton a strong Base ( ...
, and have the potential to form four new contiguous stereocenters. Azomethine
ylides An ylide or ylid () is a neutral dipolar molecule containing a formally negatively charged atom (usually a carbanion) directly attached to a heteroatom with a formal positive charge (usually nitrogen, phosphorus or sulfur), and in which both atoms ...
thus have high utility in
total synthesis Total synthesis is the complete chemical synthesis of a complex molecule, often a natural product, from simple, commercially-available precursors. It usually refers to a process not involving the aid of biological processes, which distinguishes i ...
, and formation of
chiral ligand Enantioselective synthesis, also called asymmetric synthesis, is a form of chemical synthesis. It is defined by IUPAC as "a chemical reaction (or reaction sequence) in which one or more new elements of chirality are formed in a substrate molecu ...
s and pharmaceuticals. Azomethine ylides can be generated from many sources, including aziridines, imines, and iminiums. They are often generated ''in situ'', and immediately reacted with dipolarophiles.


Structure

The
resonance structure In chemistry, resonance, also called mesomerism, is a way of describing bonding in certain molecules or polyatomic ions by the combination of several contributing structures (or ''forms'', also variously known as ''resonance structures'' or '' ...
s below show the
1,3-dipole In organic chemistry, a 1,3-dipolar compound or 1,3-dipole is a dipolar compound with delocalized electrons and a separation of charge over three atoms. They are reactants in 1,3-dipolar cycloadditions. The dipole has at least one resonance s ...
contribution, in which the two carbon atoms adjacent to the nitrogen have a negative or positive charge. The most common representation of azomethine ylides is that in which the nitrogen is positively charged, and the negative charge is shared between the two carbon atoms. The relative contributions of the different resonance structures depend on the substituents on each atom. The carbon containing
electron-withdrawing In chemistry, an electron-withdrawing group (EWG) is a substituent that has some of the following kinetic and thermodynamic implications: *with regards to electron transfer, electron-withdrawing groups enhance the oxidizing power tendency of th ...
substituents will have a more partial negative charge, due to the ability of the nearby electron-withdrawing group to stabilize the negative charge. Three different ylide shapes are possible, each leading to different stereochemistry in the products of 1,3-dipolar cycloaddition reactions. W-shaped, U-shaped, and S-shaped ylides are possible. The W- and U-shaped ylides, in which the R substituents are on the same side, result in ''syn'' cycloaddition products, whereas S-shaped ylides result in ''anti'' products. In the examples below, where the R3 substituent ends up in the product depends on the substituent's steric and electronic nature (see regioselectivity of 1,3 dipolar cycloadditions). The stereochemistry of R1 and R2 in the cycloaddition product is derived from the dipole. The stereochemistry of R3 is derived from the dipolarophile—if the dipolarophile is more than mono-substituted (and
prochiral In stereochemistry, prochiral molecules are those that can be converted from achiral to chiral in a single step. An achiral species which can be converted to a chiral in two steps is called proprochiral. If two identical substituents are att ...
), up to four new stereocenters can result in the product.


Generation


From aziridines

Azomethine ylides can be generated from ring opening of
aziridines 220 px, chemotherapeutic agent by virtue of its antitumour activity. Aziridines are organic compounds containing the aziridine functional group, a three-membered heterocycle with one amine (-NR-) and two methylene bridges (--). The parent compou ...
. In accordance with the
Woodward–Hoffmann rules The Woodward–Hoffmann rules (or the pericyclic selection rules), devised by Robert Burns Woodward and Roald Hoffmann, are a set of rules used to rationalize or predict certain aspects of the stereochemistry and activation energy of pericyclic rea ...
, the thermal four-electron ring opening proceeds via a
conrotatory An electrocyclic reaction can either be classified as conrotatory or disrotatory based on the rotation at each end of the molecule. In conrotatory mode, both atomic orbitals of the end groups turn in the same direction (such as both atomic orbital ...
process, whereas the photochemical reaction is disrotatory. In this ring opening reaction, there is an issue of
torquoselectivity Torquoselectivity is a special kind of stereoselectivity observed in electrocyclic reactions in organic chemistry, defined as "the preference for inward or outward rotation of substituents in conrotatory or disrotatory electrocyclic reactions." Torq ...
. Electronegative substituents prefer to rotate outwards, to the same side as the R substituent on the nitrogen, whereas electropositive substituents prefer to rotate inwards. Note that with aziridines, ring opening can result in a different 1,3-dipole, in which a C–N bond (rather than the C–C bond) breaks.


By condensation of aldehyde with amine

One of the easiest methods of forming azomethine ylides is by condensation of an
aldehyde In organic chemistry, an aldehyde () is an organic compound containing a functional group with the structure . The functional group itself (without the "R" side chain) can be referred to as an aldehyde but can also be classified as a formyl grou ...
with an
amine In chemistry, amines (, ) are compounds and functional groups that contain a basic nitrogen atom with a lone pair. Amines are formally derivatives of ammonia (), wherein one or more hydrogen Hydrogen is the chemical element wi ...
. If the amine contains an electron-withdrawing group on the alpha carbon, such as an
ester In chemistry, an ester is a compound derived from an oxoacid (organic or inorganic) in which at least one hydroxyl group () is replaced by an alkoxy group (), as in the substitution reaction of a carboxylic acid and an alcohol. Glycerides a ...
, the
deprotonation Deprotonation (or dehydronation) is the removal (transfer) of a proton (or hydron, or hydrogen cation), (H+) from a Brønsted–Lowry acid in an acid–base reaction.Henry Jakubowski, Biochemistry Online Chapter 2A3, https://employees.csbsju. ...
occurs readily. A possible disadvantage of using this method is that the ester ends up in the cycloaddition product. An alternative is to use a carboxylic acid, which can easily be removed during the cycloaddition process by decarboxylation.


From imines and iminiums

Azomethine ylides can also be formed directly by deprotonation of iminiums.


By ''N''-metallation

The metal reagents used in this reaction include
lithium bromide Lithium bromide (LiBr) is a chemical compound of lithium and bromine. Its extreme hygroscopic character makes LiBr useful as a desiccant in certain air conditioning systems.Wietelmann, Ulrich and Bauer, Richard J. (2005) "Lithium and Lithium Compo ...
and
silver acetate Silver acetate is an coordination compound with the empirical formula CH3CO2Ag (or AgC2H3O2). A photosensitive, white, crystalline solid, it is a useful reagent in the laboratory as a source of silver ions lacking an oxidizing anion. Synthesis a ...
. In this method, the metal coordinates to the nitrogen in order to activate the substrate for deprotonation. Another way to form azomethine ylides from imines is by prototropy and by
alkylation Alkylation is the transfer of an alkyl group from one molecule to another. The alkyl group may be transferred as an alkyl carbocation, a free radical, a carbanion, or a carbene (or their equivalents). Alkylating agents are reagents for effecti ...
.


From münchnones

Ylides can be formed from
münchnone Münchnone (synonyms: 1,3-oxazolium-5-oxide; 1,3-oxazolium-5-olate; anhydro-5-hydroxy-1,3-oxazolium hydroxide; 5-hydroxy-1,3-oxazolium hydroxide, inner salt; oxido-oxazolium) is a mesoionic heterocyclic aromatic chemical compound, with the molecula ...
s, which are
mesoionic In chemistry, mesoionic compounds are one in which a heterocyclic structure is dipolar and where both the negative and the positive charges are delocalized. A completely uncharged structure cannot be written and mesoionic compounds cannot be rep ...
heterocycles, and act as cyclic azomethine ylides.


1,3-dipolar cycloaddition reactions

As with other cycloaddition reactions of a
1,3-dipole In organic chemistry, a 1,3-dipolar compound or 1,3-dipole is a dipolar compound with delocalized electrons and a separation of charge over three atoms. They are reactants in 1,3-dipolar cycloadditions. The dipole has at least one resonance s ...
with a π-system, 1,3-dipolar cycloaddition using an azomethine ylide is a six-electron process. According to the
Woodward–Hoffmann rules The Woodward–Hoffmann rules (or the pericyclic selection rules), devised by Robert Burns Woodward and Roald Hoffmann, are a set of rules used to rationalize or predict certain aspects of the stereochemistry and activation energy of pericyclic rea ...
, this addition is
suprafacial Antarafacial ( Woodward-Hoffmann symbol a) and suprafacial (s) are two topological concepts in organic chemistry describing the relationship between two simultaneous chemical bond making and/or bond breaking processes in or around a reaction center ...
with respect to both the dipole and dipolarophile. The reaction is generally viewed as concerted, in which the two carbon-carbon bonds are being formed at the same time, but asynchronously. However, depending on the nature of the dipole and dipolarophile,
diradical In chemistry, a diradical is a molecular species with two electrons occupying molecular orbitals (MOs) which are degenerate. The term "diradical" is mainly used to describe organic compounds, where most diradicals are extremely reactive and i ...
or
zwitterion In chemistry, a zwitterion ( ; ), also called an inner salt or dipolar ion, is a molecule that contains an equal number of positively- and negatively-charged functional groups. : With amino acids, for example, in solution a chemical equilibrium wil ...
ic intermediates are possible. The ''endo'' product is generally favored, as in the isoelectronic Diels–Alder reaction. In these reactions, the azomethine ylide is typically the
HOMO ''Homo'' () is the genus that emerged in the (otherwise extinct) genus '' Australopithecus'' that encompasses the extant species ''Homo sapiens'' ( modern humans), plus several extinct species classified as either ancestral to or closely relat ...
, and the electron-deficient dipolarophile the LUMO, although cycloaddition reactions with unactivated π-systems are known to occur, especially when the cyclization is intramolecular. For a discussion of frontier molecular orbital theory of 1,3-dipolar cycloadditions, see 1,3-dipolar cycloaddition#Frontier molecular orbital theory. 1,3-Dipolar cycloaddition reactions of azomethine ylides commonly use
alkene In organic chemistry, an alkene is a hydrocarbon containing a carbon–carbon double bond. Alkene is often used as synonym of olefin, that is, any hydrocarbon containing one or more double bonds.H. Stephen Stoker (2015): General, Organic, an ...
s or alkynes as dipolarophiles, to form
pyrrolidines Pyrrolidine, also known as tetrahydropyrrole, is an organic compound with the molecular formula (CH2)4NH. It is a cyclic secondary amine, also classified as a saturated heterocycle. It is a colourless liquid that is miscible with water and most ...
or pyrrolines, respectively. A reaction of an azomethine ylide with an alkene is shown above, and results in a pyrrolidine. This kind of reactions can be used to synthesis Ullazine. While dipolarophiles are typically α,β-unsaturated carbonyl compounds, there have been many recent advances in developing new types of dipolarophiles. When the dipole and dipolarophile are part of the same molecule, an intramolecular cyclization reaction can lead to a polycyclic product of considerable complexity. If the dipolarophile is tethered to a carbon of the dipole, a fused bicycle is formed. If it is tethered to the nitrogen, a bridged structure results. The intramolecular nature of the reaction can also be useful in that regioselectivity is often constrained. Another advantage to intramolecular reactions is that the dipolarophile need not be electron-deficient—many examples of cyclization reactions with electron-rich, alkyl-substituted dipolarophiles have been reported, including the synthesis of martinellic acid shown below.


Stereoselectivity of cycloadditions

Unlike most 1,3-dipolar cycloaddition reactions, in which the stereochemistry of the dipole is lost or non-existent, azomethine ylides are able to retain their stereochemistry. This is generally done by ring opening of an aziridine, and subsequent trapping by a dipolarophile before the stereochemistry can scramble. Like other 1,3-dipolar cycloaddition reactions, azomethine ylide cycloadditions can form endo or exo products. This selectivity can be tuned using metal catalysis.


Enantioselective synthesis

Enantioselective In chemistry, an enantiomer ( /ɪˈnænti.əmər, ɛ-, -oʊ-/ ''ih-NAN-tee-ə-mər''; from Ancient Greek ἐνάντιος ''(enántios)'' 'opposite', and μέρος ''(méros)'' 'part') – also called optical isomer, antipode, or optical anti ...
cycloaddition of azomethine ylides using chiral catalysts was first described in a seminal work by Allway and Grigg in 1991. This powerful method was further developed by Jørgensen and Zhang. These reactions generally use
zinc Zinc is a chemical element with the symbol Zn and atomic number 30. Zinc is a slightly brittle metal at room temperature and has a shiny-greyish appearance when oxidation is removed. It is the first element in group 12 (IIB) of the periodi ...
,
silver Silver is a chemical element with the symbol Ag (from the Latin ', derived from the Proto-Indo-European ''h₂erǵ'': "shiny" or "white") and atomic number 47. A soft, white, lustrous transition metal, it exhibits the highest electrical ...
,
copper Copper is a chemical element with the symbol Cu (from la, cuprum) and atomic number 29. It is a soft, malleable, and ductile metal with very high thermal and electrical conductivity. A freshly exposed surface of pure copper has a pinkis ...
,
nickel Nickel is a chemical element with symbol Ni and atomic number 28. It is a silvery-white lustrous metal with a slight golden tinge. Nickel is a hard and ductile transition metal. Pure nickel is chemically reactive but large pieces are slow ...
, and
calcium Calcium is a chemical element with the symbol Ca and atomic number 20. As an alkaline earth metal, calcium is a reactive metal that forms a dark oxide-nitride layer when exposed to air. Its physical and chemical properties are most similar t ...
complexes. Using chiral phosphine catalysts, enantiomerically pure spiroindolinones can be synthesized. The method described by Gong, et al. leads to an unexpected regiochemical outcome that does not follow electronic effects. This is attributed to favorable
pi stacking In chemistry, pi stacking (also called π–π stacking) refers to the presumptive attractive, noncovalent pi interactions ( orbital overlap) between the pi bonds of aromatic rings. However this is a misleading description of the phenomena sinc ...
with the catalyst.


Other reactions


Electrocyclizations

Conjugated azomethine ylides are capable of ,5 and ,7
electrocyclization In organic chemistry, an electrocyclic reaction is a type of pericyclic rearrangement where the net result is one pi bond being converted into one sigma bond or vice versa. These reactions are usually categorized by the following criteria: * React ...
s. An example of a ,7electrocyclization of a azomethine ylide is shown below. This
conrotatory An electrocyclic reaction can either be classified as conrotatory or disrotatory based on the rotation at each end of the molecule. In conrotatory mode, both atomic orbitals of the end groups turn in the same direction (such as both atomic orbital ...
ring-closing is followed by a
suprafacial Antarafacial ( Woodward-Hoffmann symbol a) and suprafacial (s) are two topological concepts in organic chemistry describing the relationship between two simultaneous chemical bond making and/or bond breaking processes in or around a reaction center ...
,5hydride shift, which affords the rearomatized product. The sterics and geometry of the reacting phenyl ring play a major role in the success of the reaction. The compounds resulting from this type of electrocyclization have been used as dienes in Diels–Alder reactions to attach compounds to
fullerene A fullerene is an allotrope of carbon whose molecule consists of carbon atoms connected by single and double bonds so as to form a closed or partially closed mesh, with fused rings of five to seven atoms. The molecule may be a hollow sphere, ...
s.


Use in synthesis


Total synthesis of martinellic acid

A cycloaddition of an azomethine ylide with an unactivated alkene was used in total synthesis of martinellic acid. The cycloaddition step formed two rings, including a pyrrolidine, and two stereocenters.


Total synthesis of spirotryprostatin B

In the synthesis of spirotryprostatin B, an azomethine ylide is formed from condensation of an amine with an
aldehyde In organic chemistry, an aldehyde () is an organic compound containing a functional group with the structure . The functional group itself (without the "R" side chain) can be referred to as an aldehyde but can also be classified as a formyl grou ...
. The ylide then reacts with an electron-deficient alkene on an indolinone, resulting in formation of a spirocyclic pyrrolidine and four contiguous stereocenters.


Synthesis of benzodiazepinones

Cyclization of an azomethine ylide with a carbonyl affords a spirocyclic
oxazolidine An oxazolidine is a five-membered ring compound consisting of three carbon atoms, a nitrogen atom and an oxygen atom. The O atom and NH group are the 1 and 3 positions, respectively. In oxazolidine derivatives, there is always a carbon atom betwee ...
, which loses CO2 to form a seven-membered ring. These high-utility decarboxylative multi-step reactions are common in azomethine ylide chemistry.


References

{{reflist Organic chemistry