Aromatic L-amino Acid Decarboxylase Inhibitors

In chemistry, aromaticity is a chemical property of cyclic ( ring-shaped), ''typically'' planar (flat) molecular structures with pi bonds in resonance (those containing delocalized electrons) that gives increased stability compared to saturated compounds having single bonds, and other geometric or connective non-cyclic arrangements with the same set of atoms. Aromatic rings are very stable and do not break apart easily. Organic compounds that are not aromatic are classified as aliphatic compounds—they might be cyclic, but only aromatic rings have enhanced stability. The term ''aromaticity'' with this meaning is historically related to the concept of having an aroma, but is a distinct property from that meaning.

Since the most common aromatic compounds are derivatives of benzene (an aromatic hydrocarbon common in petroleum and its distillates), the word ''aromatic'' occasionally refers informally to benzene derivatives, and so it was first defined. Nevertheless, many non-benzene aromatic compounds exist. In living organisms, for example, the most common aromatic rings are the double-ringed bases (Purine) in RNA and DNA. An aromatic functional group or other substituent is called an aryl group.

In terms of the electronic nature of the molecule, aromaticity describes a conjugated system often represented in Lewis diagrams as alternating single and double bonds in a ring. In reality, the electrons represented by the double bonds in the Lewis diagram are actually distributed evenly around the ring ("delocalized"), increasing the molecule's stability. Due to the restrictions imposed by the way Lewis diagrams are drawn, the molecule cannot be represented by one diagram, but rather a hybrid of multiple different diagrams (called resonance), such as with the two resonance structures of benzene. These molecules cannot be found in either one of these representations, with the longer single bonds in one location and the shorter double bond in another (see below). Rather, the molecule exhibits all equal bond lengths in between those of single and double bonds. This commonly seen model of aromatic rings, namely the idea that benzene was formed from a six-membered carbon ring with alternating single and double bonds (cyclohexatriene), was developed by August Kekulé (see below). The model for benzene consists of two resonance forms, which corresponds to the double and single bonds superimposing to produce six one-and-a-half bonds. Benzene is a more stable molecule than would be expected without accounting for charge delocalization.

Theory

As it is a standard for resonance diagrams, the use of a double-headed arrow indicates that two structures are not distinct entities but merely hypothetical possibilities. Neither is an accurate representation of the ''actual'' compound, which is best represented by a hybrid (average) of these structures. A C=C bond is shorter than a C−C bond. Benzene is a regular hexagon—it is planar and all six carbon–carbon bonds have the same length, which is intermediate between that of a single and that of a double bond.

In a cyclic molecule with three alternating double bonds, cyclohexatriene, the bond length of the single bond would be 1.54  Å and that of the double bond would be 1.34 Å. However, in a molecule of benzene, the length of each of the bonds is 1.40 Å, indicating it to be the average of single and double bond.

A better representation is that of the circular π-bond (Armstrong's ''inner cycle''), in which the electron density is evenly distributed through a π-bond above and below the ring. This model more correctly represents the location of electron density within the aromatic ring.

The single bonds are formed from overlap of hybridized atomic sp²-orbitals in line between the carbon nuclei—these are called σ-bonds. Double bonds consist of a σ-bond and a π-bond. The π-bonds are formed from overlap of atomic p-orbitals above and below the plane of the ring. The following diagram shows the positions of these p-orbitals:

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Since they are out of the plane of the atoms, these orbitals can interact with each other freely, and become delocalized. This means that, instead of being tied to one atom of carbon, each electron is shared by all six in the ring. Thus, there are not enough electrons to form double bonds on all the carbon atoms, but the "extra" electrons strengthen all of the bonds on the ring equally. The resulting molecular orbital is considered to have ''π symmetry''.

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History

The term "aromatic"

The first known use of the word "aromatic" as a ''chemical'' term—namely, to apply to compounds that contain the phenyl group—occurs in an article by August Wilhelm Hofmann in 1855. Hofmann used the term for a class of benzene compounds, many of which have odors (aromas), unlike pure saturated hydrocarbons. Aromaticity as a chemical property bears no general relationship with the olfactory properties of such compounds (how they smell), although in 1855, before the structure of benzene or organic compounds was understood, chemists like Hofmann were beginning to understand that odiferous molecules from plants, such as terpenes, had chemical properties that we recognize today are similar to unsaturated petroleum hydrocarbons like benzene. If this was indeed the earliest introduction of the term, it is curious that Hofmann says nothing about why he introduced an adjective indicating olfactory character to apply to a group of chemical substances, of which only some have notable aromas. Also, some of the most odoriferous organic substances known are terpenes, which are not aromatic in the chemical sense. Terpenes and benzenoid substances do have a chemical characteristic in common, that is, higher unsaturation than many aliphatic compounds, and Hofmann may not have made a distinction between the two categories. Many of the earliest-known examples of aromatic compounds, such as benzene and toluene, have distinctive pleasant smells. This property led to the term "aromatic" for this class of compounds, and hence the term "aromaticity" for the eventually discovered electronic property.

The structure of the benzene ring

In the 19th century, chemists found it puzzling that benzene could be so unreactive toward addition reactions, given its presumed high degree of unsaturation. The cyclohexatriene structure for benzene was first proposed by August Kekulé in 1865. Most chemists were quick to accept this structure, since it accounted for most of the known isomeric relationships of aromatic chemistry. The hexagonal structure explains why only one isomer of benzene exists and why disubstituted compounds have three isomers.

Between 1897 and 1906, J. J. Thomson, the discoverer of the electron, proposed three equivalent electrons between each pair of carbon atoms in benzene. An explanation for the exceptional stability of benzene is conventionally attributed to Sir Robert Robinson, who was apparently the first (in 1925) to coin the term ''aromatic sextet'' as a group of six electrons that resists disruption.

In fact, this concept can be traced further back, via Ernest Crocker in 1922, to Henry Edward Armstrong, who in 1890 wrote "the ixcentric affinities act within a cycle … benzene may be represented by a double ring … and when an additive compound is formed, the inner cycle of affinity suffers disruption, the contiguous carbon-atoms to which nothing has been attached of necessity acquire the ethylenic condition".

Here, Armstrong is describing at least four modern concepts. First, his "affinity" is better known nowadays as the electron, which was to be discovered only seven years later by J. J. Thomson. Second, he is describing electrophilic aromatic substitution, proceeding (third) through a Wheland intermediate, in which (fourth) the conjugation of the ring is broken. He introduced the symbol C centered on the ring as a shorthand for the ''inner cycle'', thus anticipating Erich Clar's notation. It is argued that he also anticipated the nature of wave mechanics, since he recognized that his affinities had direction, not merely being point particles, and collectively having a distribution that could be altered by introducing substituents onto the benzene ring (much as the distribution of the electric charge in a body is altered by bringing it near to another body).

The quantum mechanical origins of this stability, or aromaticity, were first modelled by Hückel in 1931. He was the first to separate the bonding electrons into sigma and pi electrons.

Aromaticity of an arbitrary aromatic compound can be measured quantitatively by the nucleus-independent chemical shift (NICS) computational method and aromaticity percentage methods.

Characteristics of aromatic systems

An aromatic (or aryl) ring contains a set of covalently bound atoms with specific characteristics:

# A delocalized conjugated π system, most commonly an arrangement of alternating single and double bonds
# Coplanar structure, with all the contributing atoms in the same plane
# Contributing atoms arranged in one or more rings
# A number of π delocalized electrons that is even, but not a multiple of 4. That is, 4''n'' + 2 π-electrons, where ''n'' = 0, 1, 2, 3, and so on. This is known as Hückel's rule.

According to Hückel's rule, if a molecule has 4''n'' + 2 π-electrons, it is aromatic, but if it has 4''n'' π-electrons and has characteristics 1–3 above, the molecule is said to be antiaromatic. Whereas benzene is aromatic (6 electrons, from 3 double bonds), cyclobutadiene is antiaromatic, since the number of π delocalized electrons is 4, which of course is a multiple of 4. The cyclobutadienide(2−) ion, however, is aromatic (6 electrons). An atom in an aromatic system can have other electrons that are not part of the system, and are therefore ignored for the 4''n'' + 2 rule. In furan, the oxygen atom is sp² hybridized. One lone pair is in the π system and the other in the plane of the ring (analogous to the C–H bond in the other positions). There are 6 π-electrons, so furan is aromatic.

Aromatic molecules typically display enhanced chemical stability, compared with similar non-aromatic molecules. A molecule that can be aromatic will tend to change toward aromaticity, and the added stability changes the chemistry of the molecule. Aromatic compounds undergo electrophilic aromatic substitution and nucleophilic aromatic substitution reactions, but not electrophilic addition reactions as happens with carbon–carbon double bonds.

In the presence of a magnetic field, the circulating π-electrons in an aromatic molecule produce an aromatic ring current that induces an additional magnetic field, an important effect in nuclear magnetic resonance. The NMR signal of protons in the plane of an aromatic ring are shifted substantially further down-field than those on non-aromatic sp² carbons. This is an important way of detecting aromaticity. By the same mechanism, the signals of protons located near the ring axis are shifted upfield.

Aromatic molecules are able to interact with each other in so-called π–π stacking: The π systems form two parallel rings overlap in a "face-to-face" orientation. Aromatic molecules are also able to interact with each other in an "edge-to-face" orientation: The slight positive charge of the substituents on the ring atoms of one molecule are attracted to the slight negative charge of the aromatic system on another molecule.

Planar monocyclic molecules containing 4''n'' π-electrons are called antiaromatic and are, in general, unstable. Molecules that could be antiaromatic will tend to change from this electronic or conformation, thereby becoming non-aromatic. For example, cyclooctatetraene (COT) distorts out of planarity, breaking π overlap between adjacent double bonds. Recent studies have determined that cyclobutadiene adopts an asymmetric, rectangular configuration in which single and double bonds indeed alternate, with no resonance; the single bonds are markedly longer than the double bonds, reducing unfavorable p-orbital overlap. This reduction of symmetry lifts the degeneracy of the two formerly non-bonding molecular orbitals, which by Hund's rule forces the two unpaired electrons into a new, weakly bonding orbital (and also creates a weakly antibonding orbital). Hence, cyclobutadiene is non-aromatic; the strain of the asymmetric configuration outweighs the anti-aromatic destabilization that would afflict the symmetric, square configuration.

Hückel's rule of aromaticity treats molecules in their singlet ground states (S₀). The stability trends of the compounds described here are found to be reversed in the lowest lying triplet and singlet excited states (T₁ and S₁), according to Baird's rule. This means that compounds like benzene, with 4''n'' + 2 π-electrons and aromatic properties in the ground state, become antiaromatic and often adopt less symmetric structures in the excited state.

Aromatic compounds

Importance

Aromatic compounds play key roles in the biochemistry of all living things. The four aromatic amino acids histidine, phenylalanine, tryptophan, and tyrosine each serve as one of the 20 basic building-blocks of proteins. Further, all 5 nucleotides (adenine, thymine, cytosine, guanine, and uracil) that make up the sequence of the genetic code in DNA and RNA are aromatic purines or pyrimidines. The molecule heme contains an aromatic system with 22 π-electrons. Chlorophyll also has a similar aromatic system.

Aromatic compounds are important in industry. Key aromatic hydrocarbons of commercial interest are benzene, toluene, ''ortho''-xylene and ''para''-xylene. About 35 million tonnes are produced worldwide every year. They are extracted from complex mixtures obtained by the refining of oil or by distillation of coal tar, and are used to produce a range of important chemicals and polymers, including styrene, phenol, aniline, polyester and nylon.

Neutral homocyclics

Benzene, as well as most other annulenes (with the exception of cyclodecapentaene, because it is non-planar) with the formula C_4''n''+2H_4''n''+2 where ''n'' is a natural number, such as cyclotetradecaheptaene (''n''=3).

Heterocyclics

In heterocyclic aromatics (heteroaromatics), one or more of the atoms in the aromatic ring is of an element other than carbon. This can lessen the ring's aromaticity, and thus (as in the case of furan) increase its reactivity. Other examples include pyridine, pyrazine, pyrrole, imidazole, pyrazole, oxazole, thiophene, and their benzannulated analogs (benzimidazole, for example). In all these examples, the number of π-electrons is 6, due to the π-electrons from the double bonds as well as the two electrons from any lone pair that is in the p-orbital that is in the plane of the aromatic π system. For example, in pyridine, the five sp²-hybridized carbons each have a p-orbital that is perpendicular to the plane of the ring, and each of these p-orbitals contains one π-electron. Additionally, the nitrogen atom is also sp²-hybridized and has one electron in a p-orbital, which adds up to 6 p-electrons, thus making pyridine aromatic. The lone pair on the nitrogen is not part of the aromatic π system. Pyrrole and imidazole are both five membered aromatic rings that contain heteroatoms. In pyrrole, each of the four sp²-hybridized carbons contributes one π-electron, and the nitrogen atom is also sp²-hybridized and contributes two π-electrons from its lone pair, which occupies a p-orbital. In imidazole, both nitrogens are sp²-hybridized; the one in the double bond contributes one electron and the one which is not in the double bond and is in a lone pair contributes two electrons to the π system.

Fused aromatics and polycyclics

Polycyclic aromatic hydrocarbons are molecules containing two or more simple aromatic rings fused together by sharing two neighboring carbon atoms. Examples are naphthalene, anthracene, and phenanthrene. In fused aromatics, not all carbon–carbon bonds are necessarily equivalent, as the electrons are not delocalized over the entire molecule. The aromaticity of these molecules can be explained using their orbital picture. Like benzene and other monocyclic aromatic molecules, polycyclics have a cyclic conjugated pi system with p-orbital overlap above and below the plane of the ring.

Substituted aromatics

Many chemical compounds are aromatic rings with other functional groups attached. Examples include trinitrotoluene (TNT), acetylsalicylic acid (aspirin), paracetamol, and the nucleotides of DNA.

Aromatic ions

Aromatic molecules need not be neutral molecules. Ions that satisfy Huckel's rule of 4''n'' + 2 π-electrons in a planar, cyclic, conjugated molecule are considered to be aromatic ions. For example, the cyclopentadienyl anion and the cycloheptatrienylium cation are both considered to be aromatic ions, and the azulene molecule can be approximated as a combination of both.

In order to convert the atom from sp³ to sp², a carbocation, carbanion, or carbon radical must be formed. These leave sp²-hybridized carbons that can partake in the π system of an aromatic molecule. Like neutral aromatic compounds, these compounds are stable and form easily. The cyclopentadienyl anion is formed very easily and thus 1,3-cyclopentadiene is a very acidic hydrocarbon with a p''K''_a of 16. Other examples of aromatic ions include the cyclopropenium cation (2 π-electrons) and cyclooctatetraenyl dianion (10 π electrons).

Atypical aromatic compounds

Aromaticity also occurs in compounds that are not carbocyclic or heterocyclic; inorganic six-membered-ring compounds analogous to benzene have been synthesized. For example, borazine is a six-membered ring composed of alternating boron and nitrogen atoms, each with one hydrogen attached. It has a delocalized π system and undergoes electrophilic substitution reactions appropriate to aromatic rings rather than reactions expected of non-aromatic molecules.

Quite recently, the aromaticity of planar rings occurring in the Zintl phase Li₁₂Si₇ was experimentally evinced by Li solid-state NMR. Metal aromaticity is believed to exist in certain clusters of aluminium and gallium, specifically Ga₃^2- and Al₄^2-, for example.

Homoaromaticity is the state of systems where conjugation is interrupted by a single sp hybridized carbon atom.

Y-aromaticity is used to describe a Y-shaped, planar (flat) molecule with resonance bonds. The concept was developed to explain the extraordinary stability and high basicity of the guanidinium cation. Guanidinium is not a ring molecule, and is cross-conjugated rather than a π system of consecutively attached atoms, but is reported to have its six π-electrons delocalized over the whole molecule. The concept is controversial and some authors emphasize different effects. This has also been suggested as the reason that the trimethylenemethane dication is more stable than the butadienyl dication.

σ-aromaticity refers to stabilization arising from the delocalization of sigma bonds. It is often invoked in cluster chemistry and is closely related to Wade's Rule. Furthermore, in 2021 a σ-aromatic Th₃ complex was reported, indicating that the concept of σ-aromaticity remains relevant for orbitals with principle quantum number 6.

Other symmetries

Möbius aromaticity occurs when a cyclic system of molecular orbitals, formed from p_π atomic orbitals and populated in a closed shell by 4''n'' (''n'' is an integer) electrons, is given a single half-twist to form a Möbius strip. A π system with 4''n'' electrons in a flat (non-twisted) ring would be antiaromatic, and therefore highly unstable, due to the symmetry of the combinations of p atomic orbitals. By twisting the ring, the symmetry of the system changes and becomes allowed (see also Möbius–Hückel concept for details). Because the twist can be left-handed or right-handed, the resulting Möbius aromatics are ''dissymmetric'' or chiral. But as of 2012, no Möbius aromatic molecules had been synthesized. Aromatics with two half-twists corresponding to the paradromic topologies were first suggested by Johann Listing. In one form of carbo-benzene, the ring is expanded and contains alkyne and allene groups.

Spherical aromaticity is aromaticity that occurs in fullerenes. In 2000, Andreas Hirsch and coworkers in Erlangen, Germany, formulated a rule to determine when a fullerene would be aromatic. They found that if there were 2(''n'' + 1)² π-electrons, then the fullerene would display aromatic properties. This follows from the fact that an aromatic fullerene must have full icosahedral (or other appropriate) symmetry, so the molecular orbitals must be entirely filled. This is possible only if there are exactly 2(''n'' + 1)² electrons, where ''n'' is a nonnegative integer.

See also

* Aromatization
* Aromatic amine
* List of benzo compounds
* Pi interaction
* Avoided crossing

References

External links

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Physical organic chemistry