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Trophic Coherence
Trophic coherence is a property of directed graphs (or directed networks). It is based on the concept of trophic levels used mainly in ecology, but which can be defined for directed networks in general and provides a measure of hierarchical structure among nodes. Trophic coherence is the tendency of nodes to fall into well-defined trophic levels. It has been related to several structural and dynamical properties of directed networks, including the prevalence of cycles and network motifs, ecological stability, intervality, and spreading processes like epidemics and neuronal avalanches. Definition Consider a directed network defined by the N\times N adjacency matrix A=(a_). Each node i can be assigned a trophic level s_i according to :: s_i=1+\frac\sum_j a_ s_j, where k_i^\text=\sum_j a_ is i's in-degree, and nodes with k_i^\text=0 (basal nodes) have s_i=1 by convention. Each edge has a ''trophic difference'' associated, defined as x_=s_i-s_j. The ''trophic coherence'' of th ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Directed Graph
In mathematics, and more specifically in graph theory, a directed graph (or digraph) is a graph that is made up of a set of vertices connected by directed edges, often called arcs. Definition In formal terms, a directed graph is an ordered pair where * ''V'' is a set whose elements are called '' vertices'', ''nodes'', or ''points''; * ''A'' is a set of ordered pairs of vertices, called ''arcs'', ''directed edges'' (sometimes simply ''edges'' with the corresponding set named ''E'' instead of ''A''), ''arrows'', or ''directed lines''. It differs from an ordinary or undirected graph, in that the latter is defined in terms of unordered pairs of vertices, which are usually called ''edges'', ''links'' or ''lines''. The aforementioned definition does not allow a directed graph to have multiple arrows with the same source and target nodes, but some authors consider a broader definition that allows directed graphs to have such multiple arcs (namely, they allow the arc set to be a m ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Trophic Level
The trophic level of an organism is the position it occupies in a food web. A food chain is a succession of organisms that eat other organisms and may, in turn, be eaten themselves. The trophic level of an organism is the number of steps it is from the start of the chain. A food web starts at trophic level 1 with primary producers such as plants, can move to herbivores at level 2, carnivores at level 3 or higher, and typically finish with apex predators at level 4 or 5. The path along the chain can form either a one-way flow or a food "web". Ecological communities with higher biodiversity form more complex trophic paths. The word ''trophic'' derives from the Greek τροφή (trophē) referring to food or nourishment. History The concept of trophic level was developed by Raymond Lindeman (1942), based on the terminology of August Thienemann (1926): "producers", "consumers" and "reducers" (modified to "decomposers" by Lindeman). Overview The three basic ways in which org ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Nature (journal)
''Nature'' is a British weekly scientific journal founded and based in London, England. As a multidisciplinary publication, ''Nature'' features peer-reviewed research from a variety of academic disciplines, mainly in science and technology. It has core editorial offices across the United States, continental Europe, and Asia under the international scientific publishing company Springer Nature. ''Nature'' was one of the world's most cited scientific journals by the Science Edition of the 2019 ''Journal Citation Reports'' (with an ascribed impact factor of 42.778), making it one of the world's most-read and most prestigious academic journals. , it claimed an online readership of about three million unique readers per month. Founded in autumn 1869, ''Nature'' was first circulated by Norman Lockyer and Alexander Macmillan as a public forum for scientific innovations. The mid-20th century facilitated an editorial expansion for the journal; ''Nature'' redoubled its efforts in exp ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Proc
Proc may refer to: * Proč, a village in eastern Slovakia * '' Proč?'', a 1987 Czech film * procfs or proc filesystem, a special file system (typically mounted to ) in Unix-like operating systems for accessing process information * Protein C (PROC) * Proc, a term in video game terminology * Procedures or process, in the programming language ALGOL 68 * People's Republic of China, the formal name of China China, officially the People's Republic of China (PRC), is a country in East Asia. It is the world's most populous country, with a population exceeding 1.4 billion, slightly ahead of India. China spans the equivalent of five time zones and ... * the official acronym for the Canadian House of Commons Standing Committee on Procedure and House Affairs {{disambiguation ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Beta Distribution
In probability theory and statistics, the beta distribution is a family of continuous probability distributions defined on the interval , 1in terms of two positive parameters, denoted by ''alpha'' (''α'') and ''beta'' (''β''), that appear as exponents of the random variable and control the shape of the distribution. The beta distribution has been applied to model the behavior of random variables limited to intervals of finite length in a wide variety of disciplines. The beta distribution is a suitable model for the random behavior of percentages and proportions. In Bayesian inference, the beta distribution is the conjugate prior probability distribution for the Bernoulli, binomial, negative binomial and geometric distributions. The formulation of the beta distribution discussed here is also known as the beta distribution of the first kind, whereas ''beta distribution of the second kind'' is an alternative name for the beta prime distribution. The generalization to mult ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Barabási–Albert Model
The Barabási–Albert (BA) model is an algorithm for generating random scale-free network, scale-free complex network, networks using a preferential attachment mechanism. Several natural and human-made systems, including the Internet, the World Wide Web, citation analysis, citation networks, and some social networks are thought to be approximately scale-free and certainly contain few nodes (called hubs) with unusually high degree as compared to the other nodes of the network. The BA model tries to explain the existence of such nodes in real networks. The algorithm is named for its inventors Albert-László Barabási and Réka Albert. Concepts Many observed networks (at least approximately) fall into the class of scale-free networks, meaning that they have power law, power-law (or scale-free) degree distributions, while random graph models such as the Erdős–Rényi model, Erdős–Rényi (ER) model and the Watts and Strogatz model, Watts–Strogatz (WS) model do not exhibit pow ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Green Eggs And Ham
''Green Eggs and Ham'' is a children's book by Dr. Seuss, first published on August 12, 1960. As of 2019, the book has sold 8 million copies worldwide. The story has appeared in several adaptations, starting with 1973's ''Dr. Seuss on the Loose'' starring Paul Winchell as the voice of both characters, and more recently an animated TV series of the same name on Netflix (which also gave the originally unnamed character Sam pesters the name "Guy-Am-I"). Plot Sam-I-Am offers an unnamed man a plate of green eggs and ham. However, the man refuses repeatedly throughout the story, saying "I do not like green eggs and ham. I do not like them, Sam-I-Am." Sam further asks him to eat that food in various locations (house, box, car, tree, train, dark, rain, boat) and with a few different animals (mouse, fox, goat), but is still rebuffed. Finally, Sam-I-am asks the man to try them, and he accepts the green eggs and ham. When he declares that he likes them, he happily says, "I do so like gr ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Green Eggs And Ham Word Adjacency Network
Green is the color between cyan and yellow on the visible spectrum. It is evoked by light which has a dominant wavelength of roughly 495570 nm. In subtractive color systems, used in painting and color printing, it is created by a combination of yellow and cyan; in the RGB color model, used on television and computer screens, it is one of the additive primary colors, along with red and blue, which are mixed in different combinations to create all other colors. By far the largest contributor to green in nature is chlorophyll, the chemical by which plants photosynthesize and convert sunlight into chemical energy. Many creatures have adapted to their green environments by taking on a green hue themselves as camouflage. Several minerals have a green color, including the emerald, which is colored green by its chromium content. During post-classical and early modern Europe, green was the color commonly associated with wealth, merchants, bankers, and the gentry, while red ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Journal Of The Royal Society Interface
The ''Journal of the Royal Society Interface'' is a monthly peer-reviewed scientific journal covering the interface between the life sciences and the physical sciences, including chemistry, engineering, materials science, mathematics, and physics. The editor-in-chief is Richard Cogdell (University of Glasgow). The journal was established in 2004 and is published by the Royal Society. Abstracting and indexing The journal is abstracted and indexed in the Chemical Abstracts Service, Science Citation Index, BIOSIS Previews, Current Contents/Life Sciences, The Zoological Record, Scopus, and Index Medicus/MEDLINE/PubMed. According to the ''Journal Citation Reports'', the journal has a 2020 impact factor The impact factor (IF) or journal impact factor (JIF) of an academic journal is a scientometric index calculated by Clarivate that reflects the yearly mean number of citations of articles published in the last two years in a given journal, as ... of 4.118. References Externa ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Ecological Niche
In ecology, a niche is the match of a species to a specific environmental condition. Three variants of ecological niche are described by It describes how an organism or population responds to the distribution of resources and competitors (for example, by growing when resources are abundant, and when predators, parasites and pathogens are scarce) and how it in turn alters those same factors (for example, limiting access to resources by other organisms, acting as a food source for predators and a consumer of prey). "The type and number of variables comprising the dimensions of an environmental niche vary from one species to another ndthe relative importance of particular environmental variables for a species may vary according to the geographic and biotic contexts". See also Chapter 2: Concepts of niches, pp. 7 ''ff'' A Grinnellian niche is determined by the habitat in which a species lives and its accompanying behavioral adaptations. An Eltonian niche emphasizes that a spec ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Gene Regulatory Networks
A gene (or genetic) regulatory network (GRN) is a collection of molecular regulators that interact with each other and with other substances in the cell to govern the gene expression levels of mRNA and proteins which, in turn, determine the function of the cell. GRN also play a central role in morphogenesis, the creation of body structures, which in turn is central to evolutionary developmental biology (evo-devo). The regulator can be DNA, RNA, protein or any combination of two or more of these three that form a complex, such as a specific sequence of DNA and a transcription factor to activate that sequence. The interaction can be direct or indirect (through transcribed RNA or translated protein). In general, each mRNA molecule goes on to make a specific protein (or set of proteins). In some cases this protein will be Protein#Structural proteins, structural, and will accumulate at the cell membrane or within the cell to give it particular structural properties. In other cases th ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Metabolic Networks
A metabolic network is the complete set of metabolic and physical processes that determine the physiological and biochemical properties of a cell. As such, these networks comprise the chemical reactions of metabolism, the metabolic pathways, as well as the regulatory interactions that guide these reactions. With the sequencing of complete genomes, it is now possible to reconstruct the network of biochemical reactions in many organisms, from bacteria to human. Several of these networks are available online: Kyoto Encyclopedia of Genes and Genomes (KEGG), EcoCyc, BioCyc and metaTIGER. Metabolic networks are powerful tools for studying and modelling metabolism. Uses Metabolic networks can be used to detect comorbidity patterns in diseased patients. Certain diseases, such as obesity and diabetes, can be present in the same individual concurrently, sometimes one disease being a significant risk factor for the other disease. The disease phenotypes themselves are normally the conseque ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
