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UpSet Plot
UpSet plots are a data visualization method for showing set data with more than three intersecting sets. UpSet shows intersections in a matrix, with the rows of the matrix corresponding to the sets, and the columns to the intersections between these sets (or vice versa). The size of the sets and of the intersections are shown as bar charts. History UpSet plots were first proposed in 2014. The first prototype was implemented as an interactive, web-based application. UpSet plots are related to Mosaic Plots, although Mosaic plots are designed for categorical instead of set data. UpSet plots became popular as they became available as an R -library based on Matplotlib, and were subsequently re-implemented in various programming languages, such as Python, and others. As of May 2022, UpSetR has been downloaded from CRAN more than 1 million times. UpSet plots are now frequently used instead of Venn diagrams, especially in life sciences. Usage UpSet plots visualize int ...
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Data And Information Visualization
Data and information visualization (data viz or info viz) is an interdisciplinary field that deals with the graphic representation of data and information. It is a particularly efficient way of communicating when the data or information is numerous as for example a time series. It is also the study of visual representations of abstract data to reinforce human cognition. The abstract data include both numerical and non-numerical data, such as text and geographic information. It is related to infographics and scientific visualization. One distinction is that it's information visualization when the spatial representation (e.g., the page layout of a graphic design) is chosen, whereas it's scientific visualization when the spatial representation is given. From an academic point of view, this representation can be considered as a mapping between the original data (usually numerical) and graphic elements (for example, lines or points in a chart). The mapping determines how the attri ...
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GitHub
GitHub, Inc. () is an Internet hosting service for software development and version control using Git. It provides the distributed version control of Git plus access control, bug tracking, software feature requests, task management, continuous integration, and wikis for every project. Headquartered in California, it has been a subsidiary of Microsoft since 2018. It is commonly used to host open source software development projects. As of June 2022, GitHub reported having over 83 million developers and more than 200 million repositories, including at least 28 million public repositories. It is the largest source code host . History GitHub.com Development of the GitHub.com platform began on October 19, 2007. The site was launched in April 2008 by Tom Preston-Werner, Chris Wanstrath, P. J. Hyett and Scott Chacon after it had been made available for a few months prior as a beta release. GitHub has an annual keynote called GitHub Universe. Organizational ...
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Venn Diagram
A Venn diagram is a widely used diagram style that shows the logical relation between set (mathematics), sets, popularized by John Venn (1834–1923) in the 1880s. The diagrams are used to teach elementary set theory, and to illustrate simple set relationships in probability, logic, statistics, linguistics and computer science. A Venn diagram uses simple closed curves drawn on a plane to represent sets. Very often, these curves are circles or ellipses. Similar ideas had been proposed before Venn. Christian Weise in 1712 (''Nucleus Logicoe Wiesianoe'') and Leonhard Euler (''Letters to a German Princess'') in 1768, for instance, came up with similar ideas. The idea was popularised by Venn in ''Symbolic Logic'', Chapter V "Diagrammatic Representation", 1881. Details A Venn diagram may also be called a ''set diagram'' or ''logic diagram''. It is a diagram that shows ''all'' possible logical relations between a finite collection of different sets. These diagrams depict element ...
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Heat Map
A heat map (or heatmap) is a data visualization technique that shows magnitude of a phenomenon as color in two dimensions. The variation in color may be by hue or intensity, giving obvious visual cues to the reader about how the phenomenon is clustered or varies over space. There are two fundamentally different categories of heat maps: the cluster heat map and the spatial heat map. In a cluster heat map, magnitudes are laid out into a matrix of fixed cell size whose rows and columns are discrete phenomena and categories, and the sorting of rows and columns is intentional and somewhat arbitrary, with the goal of suggesting clusters or portraying them as discovered via statistical analysis. The size of the cell is arbitrary but large enough to be clearly visible. By contrast, the position of a magnitude in a spatial heat map is forced by the location of the magnitude in that space, and there is no notion of cells; the phenomenon is considered to vary continuously. "Heat map" is a re ...
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Violin Plot
The violin, sometimes known as a ''fiddle'', is a wooden chordophone (string instrument) in the violin family. Most violins have a hollow wooden body. It is the smallest and thus highest-pitched instrument (soprano) in the family in regular use. The violin typically has four strings (some can have five), usually tuned in perfect fifths with notes G3, D4, A4, E5, and is most commonly played by drawing a bow across its strings. It can also be played by plucking the strings with the fingers (pizzicato) and, in specialized cases, by striking the strings with the wooden side of the bow (col legno). Violins are important instruments in a wide variety of musical genres. They are most prominent in the Western classical tradition, both in ensembles (from chamber music to orchestras) and as solo instruments. Violins are also important in many varieties of folk music, including country music, bluegrass music, and in jazz. Electric violins with solid bodies and piezoelectric pickups ar ...
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Box Plot
In descriptive statistics, a box plot or boxplot is a method for graphically demonstrating the locality, spread and skewness groups of numerical data through their quartiles. In addition to the box on a box plot, there can be lines (which are called ''whiskers'') extending from the box indicating variability outside the upper and lower quartiles, thus, the plot is also termed as the box-and-whisker plot and the box-and-whisker diagram. Outliers that differ significantly from the rest of the dataset may be plotted as individual points beyond the whiskers on the box-plot. Box plots are non-parametric: they display variation in samples of a statistical population without making any assumptions of the underlying statistical distribution (though Tukey's boxplot assumes symmetry for the whiskers and normality for their length). The spacings in each subsection of the box-plot indicate the degree of dispersion (spread) and skewness of the data, which are usually described using the five ...
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UpSet Plot And A Corresponding Venn Diagram
Upset may refer to: * Upset (band), an American rock band * Upset (competition), where a likely winner loses * "Upset" (''Hit the Floor''), an episode of the television series ''Hit the Floor'' * Upset (horse), a racehorse * Upset (wastewater treatment), temporarily decreased effluent quality * Aircraft upset, a dangerous aviation condition * Upper set, in mathematics * UpSet Plot UpSet plots are a data visualization method for showing set data with more than three intersecting sets. UpSet shows intersections in a matrix, with the rows of the matrix corresponding to the sets, and the columns to the intersections between t ..., in data visualization * Upset forging, a forging process where a workpiece's diameter is increased by compressing its length. * Upset, a type of fault in wood, see Shakes (timber) § Thunder shake or upset {{disambiguation ...
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UpSet Intersection Concept
Upset may refer to: * Upset (band), an American rock band * Upset (competition), where a likely winner loses * "Upset" (''Hit the Floor''), an episode of the television series ''Hit the Floor'' * Upset (horse), a racehorse * Upset (wastewater treatment), temporarily decreased effluent quality * Aircraft upset, a dangerous aviation condition * Upper set, in mathematics * UpSet Plot UpSet plots are a data visualization method for showing set data with more than three intersecting sets. UpSet shows intersections in a matrix, with the rows of the matrix corresponding to the sets, and the columns to the intersections between t ..., in data visualization * Upset forging, a forging process where a workpiece's diameter is increased by compressing its length. * Upset, a type of fault in wood, see Shakes (timber) § Thunder shake or upset {{disambiguation ...
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CRAN (R Programming Language)
R packages are extensions to the R statistical programming language. R packages contain code, data, and documentation in a standardised collection format that can be installed by users of R, typically via a centralised software repository such as CRAN (the Comprehensive R Archive Network). The large number of packages available for R, and the ease of installing and using them, has been cited as a major factor driving the widespread adoption of the language in data science. Compared to libraries in other programming language, R packages must conform to a relatively strict specification. The ''Writing R Extensions'' manual specifies a standard directory structure for R source code, data, documentation, and package metadata, which enables them to be installed and loaded using R's in-built package management tools. Packages distributed on CRAN must meet additional standards. According to John Chambers, whilst these requirements "impose considerable demands" on package developers, the ...
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Set (mathematics)
A set is the mathematical model for a collection of different things; a set contains '' elements'' or ''members'', which can be mathematical objects of any kind: numbers, symbols, points in space, lines, other geometrical shapes, variables, or even other sets. The set with no element is the empty set; a set with a single element is a singleton. A set may have a finite number of elements or be an infinite set. Two sets are equal if they have precisely the same elements. Sets are ubiquitous in modern mathematics. Indeed, set theory, more specifically Zermelo–Fraenkel set theory, has been the standard way to provide rigorous foundations for all branches of mathematics since the first half of the 20th century. History The concept of a set emerged in mathematics at the end of the 19th century. The German word for set, ''Menge'', was coined by Bernard Bolzano in his work ''Paradoxes of the Infinite''. Georg Cantor, one of the founders of set theory, gave the following defin ...
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Python (programming Language)
Python is a high-level, general-purpose programming language. Its design philosophy emphasizes code readability with the use of significant indentation. Python is dynamically-typed and garbage-collected. It supports multiple programming paradigms, including structured (particularly procedural), object-oriented and functional programming. It is often described as a "batteries included" language due to its comprehensive standard library. Guido van Rossum began working on Python in the late 1980s as a successor to the ABC programming language and first released it in 1991 as Python 0.9.0. Python 2.0 was released in 2000 and introduced new features such as list comprehensions, cycle-detecting garbage collection, reference counting, and Unicode support. Python 3.0, released in 2008, was a major revision that is not completely backward-compatible with earlier versions. Python 2 was discontinued with version 2.7.18 in 2020. Python consistently ranks as ...
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Matplotlib
Matplotlib is a plotting library for the Python programming language and its numerical mathematics extension NumPy. It provides an object-oriented API for embedding plots into applications using general-purpose GUI toolkits like Tkinter, wxPython, Qt, or GTK. There is also a procedural "pylab" interface based on a state machine (like OpenGL), designed to closely resemble that of MATLAB, though its use is discouraged. SciPy makes use of Matplotlib. Matplotlib was originally written by John D. Hunter. Since then it has had an active development community and is distributed under a BSD-style license. Michael Droettboom was nominated as matplotlib's lead developer shortly before John Hunter's death in August 2012 and was further joined by Thomas Caswell. Matplotlib is a NumFOCUS fiscally sponsored project. Matplotlib 2.0.x supports Python versions 2.7 through 3.10. Python 3 support started with Matplotlib 1.2. Matplotlib 1.4 is the last version to support Python 2.6. Matplo ...
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