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Syrmaticus Pheasant
__NOTOC__ The genus ''Syrmaticus'' contains the five species of long-tailed pheasants. The males have short spurs and usually red facial wattles, but otherwise differ wildly in appearance. The hens (females) and chicks of all the species have a rather conservative and plesiomorphic drab brown color pattern.Zhan & Zhang (2005) 5 species are generally accepted in this genus. Systematics and taxonomy The genus is occasionally included in ''Phasianus'' based on DNA sequence data, but this does not seem well warranted; the molecular evolution in this genus has been unusual and can easily mislead molecular phylogenetic studies and makes molecular clocks unreliable. At least in the cytochrome ''b'' sequence transitions have outnumbered transversions to an extent rarely seen in other birds. Transition-transversion frequencies in mtDNA control region are by contrast more like those usually seen in birds, but this region of the mitochondrial genome has been evolving unusually slowly i ...
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Johann Georg Wagler
Johann Georg Wagler (28 March 1800 – 23 August 1832) was a German herpetologist and ornithologist. Wagler was assistant to Johann Baptist von Spix, and gave lectures in zoology at the Ludwig Maximilian University of Munich after it was moved to Munich. He worked on the extensive collections brought back from Brazil by Spix, and published partly together with him books on reptiles from Brazil. Wagler wrote ''Monographia Psittacorum'' (1832), which included the correct naming of the blue macaws. In 1832, Wagler died of an accidental self-inflicted gunshot wound while out collecting in München-Moosach. Life Johann Georg Wagler was a German naturalist and scientist in the 19th century, whose works primarily focused on herpetology and ornithology (Beolens, Watkins & Grayson, 2011). Johan Georg Wagler was born on the 28th of March 1800, in the city of Nuremberg, where the Chancellor of the City Court was Wagler's father (Wagler, 1884). After taking up gymnastics at Nuremberg, J ...
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Molecular Clock
The molecular clock is a figurative term for a technique that uses the mutation rate of biomolecules to deduce the time in prehistory when two or more life forms diverged. The biomolecular data used for such calculations are usually nucleotide sequences for DNA, RNA, or amino acid sequences for proteins. The benchmarks for determining the mutation rate are often fossil or archaeological dates. The molecular clock was first tested in 1962 on the hemoglobin protein variants of various animals, and is commonly used in molecular evolution to estimate times of speciation or radiation. It is sometimes called a gene clock or an evolutionary clock. Early discovery and genetic equidistance The notion of the existence of a so-called "molecular clock" was first attributed to Émile Zuckerkandl and Linus Pauling who, in 1962, noticed that the number of amino acid differences in hemoglobin between different lineages changes roughly linearly with time, as estimated from fossil evidence. ...
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Montane Forest
Montane ecosystems are found on the slopes of mountains. The alpine climate in these regions strongly affects the ecosystem because temperatures fall as elevation increases, causing the ecosystem to stratify. This stratification is a crucial factor in shaping plant community, biodiversity, metabolic processes and ecosystem dynamics for montane ecosystems. Dense montane forests are common at moderate elevations, due to moderate temperatures and high rainfall. At higher elevations, the climate is harsher, with lower temperatures and higher winds, preventing the growth of trees and causing the plant community to transition to montane grasslands, shrublands or alpine tundra. Due to the unique climate conditions of montane ecosystems, they contain increased numbers of endemic species. Montane ecosystems also exhibit variation in ecosystem services, which include carbon storage and water supply. Life zones As elevation increases, the climate becomes cooler, due to a decrease in a ...
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Submontane
Foothills or piedmont are geographically defined as gradual increases in elevation at the base of a mountain range, higher hill range or an upland area. They are a transition zone between plains and low relief hills and the adjacent topographically higher mountains, hills, and uplands. Frequently foothills consist of alluvial fans, coalesced alluvial fans, and dissected plateaus. Description Foothills primarily border mountains, especially those which are reached through low ridges that increase in size closer and closer to the mountain, but can also border uplands and higher hills. Examples Areas where foothills exist, or areas commonly referred to as the foothills, include the: *Sierra Nevada foothills of California, USA *Foothills of the San Gabriel Valley in Los Angeles County, California, USA *Rocky Mountain Foothills in British Columbia and Alberta, Canada *Silesian Foothills in Silesia, Poland *Sivalik Hills along the Himalayas in the Indian subcontinent * Catalin ...
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Late Miocene
The Late Miocene (also known as Upper Miocene) is a sub-epoch of the Miocene epoch (geology), Epoch made up of two faunal stage, stages. The Tortonian and Messinian stages comprise the Late Miocene sub-epoch, which lasted from 11.63 Ma (million years ago) to 5.333 Ma. The evolution of life The gibbons (family Hylobatidae) and orangutans (genus ''Pongo'') are the first groups to split from the line leading to the hominins, including humans, then gorillas (genus ''Gorilla''), and finally, chimpanzees and bonobos (genus ''Pan (genus), Pan''). The splitting date between hominin and chimpanzee lineages is placed by some between 4 to 8 million years ago, that is, during the Late Miocene. References External links GeoWhen Database - Late Miocene
Miocene, .03 Miocene geochronology, 03 Messinian, * Tortonian, * {{geochronology-stub ...
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Sister Species
In phylogenetics, a sister group or sister taxon, also called an adelphotaxon, comprises the closest relative(s) of another given unit in an evolutionary tree. Definition The expression is most easily illustrated by a cladogram: Taxon A and taxon B are sister groups to each other. Taxa A and B, together with any other extant or extinct descendants of their most recent common ancestor (MRCA), form a monophyletic group, the clade AB. Clade AB and taxon C are also sister groups. Taxa A, B, and C, together with all other descendants of their MRCA form the clade ABC. The whole clade ABC is itself a subtree of a larger tree which offers yet more sister group relationships, both among the leaves and among larger, more deeply rooted clades. The tree structure shown connects through its root to the rest of the universal tree of life. In cladistic standards, taxa A, B, and C may represent specimens, species, genera, or any other taxonomic units. If A and B are at the same taxonomic ...
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Clade
A clade (), also known as a monophyletic group or natural group, is a group of organisms that are monophyletic – that is, composed of a common ancestor and all its lineal descendants – on a phylogenetic tree. Rather than the English term, the equivalent Latin term ''cladus'' (plural ''cladi'') is often used in taxonomical literature. The common ancestor may be an individual, a population, or a species (extinct or extant). Clades are nested, one in another, as each branch in turn splits into smaller branches. These splits reflect evolutionary history as populations diverged and evolved independently. Clades are termed monophyletic (Greek: "one clan") groups. Over the last few decades, the cladistic approach has revolutionized biological classification and revealed surprising evolutionary relationships among organisms. Increasingly, taxonomists try to avoid naming taxa that are not clades; that is, taxa that are not monophyletic. Some of the relationships between organisms ...
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Eumelanin
Melanin (; from el, μέλας, melas, black, dark) is a broad term for a group of natural pigments found in most organisms. Eumelanin is produced through a multistage chemical process known as melanogenesis, where the oxidation of the amino acid tyrosine is followed by polymerization. The melanin pigments are produced in a specialized group of cells known as melanocytes. Functionally, eumelanin serves as protection against UV radiation. There are five basic types of melanin: eumelanin, pheomelanin, neuromelanin, allomelanin and pyomelanin. The most common type is eumelanin, of which there are two types— brown eumelanin and black eumelanin. Pheomelanin, which is produced when melanocytes are malfunctioning due to derivation of the gene to its recessive format is a cysteine-derivative that contains poly benzothiazine portions that are largely responsible for the of red yellow tint given to some skin or hair colors. Neuromelanin is found in the brain. Research has been u ...
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Phylogeny
A phylogenetic tree (also phylogeny or evolutionary tree Felsenstein J. (2004). ''Inferring Phylogenies'' Sinauer Associates: Sunderland, MA.) is a branching diagram or a tree showing the evolutionary relationships among various biological species or other entities based upon similarities and differences in their physical or genetic characteristics. All life on Earth is part of a single phylogenetic tree, indicating common ancestry. In a ''rooted'' phylogenetic tree, each node with descendants represents the inferred most recent common ancestor of those descendants, and the edge lengths in some trees may be interpreted as time estimates. Each node is called a taxonomic unit. Internal nodes are generally called hypothetical taxonomic units, as they cannot be directly observed. Trees are useful in fields of biology such as bioinformatics, systematics, and phylogenetics. ''Unrooted'' trees illustrate only the relatedness of the leaf nodes and do not require the ancestral root to be ...
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MtDNA Control Region
The mtDNA control region is an area of the mitochondrial genome which is non-coding DNA. This region controls RNA and DNA synthesis. It is the most polymorphic region of the human mtDNA genome, with polymorphism concentrated in hypervariable regions. The average nucleotide diversity in these regions is 1.7%. Despite this variability, an RNA transcript from this region has a conserved secondary structure (''pictured'') which has been found to be under selective pressure. The mtDNA control region contains the origin of replication of one strand, and the origin of transcription for both strands. There is also an open reading frame thought to code for 7s ribosomal RNA in humans but not in mice or cows, where it has been deleted. Distinction from D-loop The control region and mtDNA D-loop are sometimes used synonymously in the literature; specifically the control region includes the D-loop along with adjacent transcription promoter regions. For this reason, the control region ...
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MtDNA
Mitochondrial DNA (mtDNA or mDNA) is the DNA located in mitochondria, cellular organelles within eukaryotic cells that convert chemical energy from food into a form that cells can use, such as adenosine triphosphate (ATP). Mitochondrial DNA is only a small portion of the DNA in a eukaryotic cell; most of the DNA can be found in the cell nucleus and, in plants and algae, also in plastids such as chloroplasts. Human mitochondrial DNA was the first significant part of the human genome to be sequenced. This sequencing revealed that the human mtDNA includes 16,569 base pairs and encodes 13 proteins. Since animal mtDNA evolves faster than nuclear genetic markers, it represents a mainstay of phylogenetics and evolutionary biology. It also permits an examination of the relatedness of populations, and so has become important in anthropology and biogeography. Origin Nuclear and mitochondrial DNA are thought to be of separate evolutionary origin, with the mtDNA being derived from t ...
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Bird
Birds are a group of warm-blooded vertebrates constituting the class Aves (), characterised by feathers, toothless beaked jaws, the laying of hard-shelled eggs, a high metabolic rate, a four-chambered heart, and a strong yet lightweight skeleton. Birds live worldwide and range in size from the bee hummingbird to the ostrich. There are about ten thousand living species, more than half of which are passerine, or "perching" birds. Birds have whose development varies according to species; the only known groups without wings are the extinct moa and elephant birds. Wings, which are modified forelimbs, gave birds the ability to fly, although further evolution has led to the loss of flight in some birds, including ratites, penguins, and diverse endemic island species. The digestive and respiratory systems of birds are also uniquely adapted for flight. Some bird species of aquatic environments, particularly seabirds and some waterbirds, have further evolved for swimming. B ...
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