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Shewanella Amazonensis
''Shewanella amazonensis'' is a facultative anaerobic bacterium from the genus of ''Shewanella'' which has been isolated from shallow water sediments from the Amazon River The Amazon River (, ; es, Río Amazonas, pt, Rio Amazonas) in South America is the largest river by discharge volume of water in the world, and the disputed longest river system in the world in comparison to the Nile. The headwaters of t .... The strain SB2B of ''Shewanella amazonensis'' produces hentriacontanonaene. References External linksType strain of ''Shewanella amazonensis'' at Bac''Dive'' - the Bacterial Diversity Metadatabase Alteromonadales Bacteria described in 1998 {{Alteromonadales-stub ...
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Bacteria
Bacteria (; singular: bacterium) are ubiquitous, mostly free-living organisms often consisting of one biological cell. They constitute a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria were among the first life forms to appear on Earth, and are present in most of its habitats. Bacteria inhabit soil, water, acidic hot springs, radioactive waste, and the deep biosphere of Earth's crust. Bacteria are vital in many stages of the nutrient cycle by recycling nutrients such as the fixation of nitrogen from the atmosphere. The nutrient cycle includes the decomposition of dead bodies; bacteria are responsible for the putrefaction stage in this process. In the biological communities surrounding hydrothermal vents and cold seeps, extremophile bacteria provide the nutrients needed to sustain life by converting dissolved compounds, such as hydrogen sulphide and methane, to energy. Bacteria also live in symbiotic and parasitic relationsh ...
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Pseudomonadota
Pseudomonadota (synonym Proteobacteria) is a major phylum of Gram-negative bacteria. The renaming of phyla in 2021 remains controversial among microbiologists, many of whom continue to use the earlier names of long standing in the literature. The phylum Proteobacteria includes a wide variety of pathogenic genera, such as ''Escherichia'', '' Salmonella'', ''Vibrio'', ''Yersinia'', ''Legionella'', and many others.Slonczewski JL, Foster JW, Foster E. Microbiology: An Evolving Science 5th Ed. WW Norton & Company; 2020. Others are free-living (nonparasitic) and include many of the bacteria responsible for nitrogen fixation. Carl Woese established this grouping in 1987, calling it informally the "purple bacteria and their relatives". Because of the great diversity of forms found in this group, it was later informally named Proteobacteria, after Proteus, a Greek god of the sea capable of assuming many different shapes (not after the Proteobacteria genus ''Proteus''). In 2021 the Internat ...
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Gammaproteobacteria
Gammaproteobacteria is a class of bacteria in the phylum Pseudomonadota (synonym Proteobacteria). It contains about 250 genera, which makes it the most genera-rich taxon of the Prokaryotes. Several medically, ecologically, and scientifically important groups of bacteria belong to this class. It is composed by all Gram-negative microbes and is the most phylogenetically and physiologically diverse class of Proteobacteria. These microorganisms can live in several terrestrial and marine environments, in which they play various important roles, including ''extreme environments'' such as hydrothermal vents. They generally have different shapes - rods, curved rods, cocci, spirilla, and filaments and include free living bacteria, biofilm formers, commensals and symbionts, some also have the distinctive trait of being bioluminescent. Metabolisms found in the different genera are very different; there are both aerobic and anaerobic (obligate or facultative) species, chemolithoautotrophic ...
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Alteromonadales
The Alteromonadales are an order of Pseudomonadota. Although they have been treated as a single family, the Alteromonadaceae, they were divided into eight by Ivanova ''et al.'' in 2004. The cells are straight or curved rods. They are motile by the use of a single flagellum A flagellum (; ) is a hairlike appendage that protrudes from certain plant and animal sperm cells, and from a wide range of microorganisms to provide motility. Many protists with flagella are termed as flagellates. A microorganism may have f .... Most of the species are marine. References * George M. Garrity: ''Bergey's Manual of Systematic Bacteriology''. 2. Auflage. Springer, New York, 2005, Volume 2: ''The Proteobacteria, Part B: The Gammaproteobacteria'' * Elena P. Ivanova, Sebastien Flavier, and Richard Christen. (2004). Phylogenetic relationships among marine ''Alteromonas''-like proteobacteria: emended description of the family Alteromonadaceae and proposal of Pseudoalteromonadaceae ''fam. nov. ...
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Shewanellaceae
''Shewanella'' is the sole genus included in the marine bacteria family Shewanellaceae. Some species within it were formerly classed as ''Alteromonas''. ''Shewanella'' consists of facultatively anaerobic Gram-negative rods, most of which are found in extreme aquatic habitats where the temperature is very low and the pressure is very high. ''Shewanella'' bacteria are a normal component of the surface flora of fish and are implicated in fish spoilage. ''Shewanella chilikensis'', a species of the genus ''Shewanella'' commonly found in the marine sponges of Saint Martin's Island of the Bay of Bengal, Bangladesh. ''Shewanella oneidensis'' MR-1 is a widely used laboratory model to study anaerobic respiration of metals and other anaerobic extracellular electron acceptors, and for teaching about microbial electrogenesis and microbial fuel cells. Biochemical characteristics of ''Shewanella'' species Colony, morphological, physiological, and biochemical characteristics of ''Shewanell ...
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Shewanella
''Shewanella'' is the sole genus included in the marine bacteria family Shewanellaceae. Some species within it were formerly classed as ''Alteromonas''. ''Shewanella'' consists of facultatively anaerobic Gram-negative rods, most of which are found in extreme aquatic habitats where the temperature is very low and the pressure is very high. ''Shewanella'' bacteria are a normal component of the surface flora of fish and are implicated in fish spoilage. ''Shewanella chilikensis'', a species of the genus ''Shewanella'' commonly found in the marine sponges of Saint Martin's Island of the Bay of Bengal, Bangladesh. ''Shewanella oneidensis'' MR-1 is a widely used laboratory model to study anaerobic respiration of metals and other anaerobic extracellular electron acceptors, and for teaching about microbial electrogenesis and microbial fuel cells. Biochemical characteristics of ''Shewanella'' species Colony, morphological, physiological, and biochemical characteristics of ''Shewanell ...
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LPSN
List of Prokaryotic names with Standing in Nomenclature (LPSN) is an online database that maintains information on the naming and taxonomy of prokaryotes, following the taxonomy requirements and rulings of the International Code of Nomenclature of Prokaryotes The International Code of Nomenclature of Prokaryotes (ICNP) formerly the International Code of Nomenclature of Bacteria (ICNB) or Bacteriological Code (BC) governs the scientific names for Bacteria and Archaea.P. H. A. Sneath, 2003. A short hist .... The database was curated from 1997 to June 2013 by Jean P. Euzéby. From July 2013 to January 2020, LPSN was curated by Aidan C. Parte. In February 2020, a new version of LPSN was published as a service of the Leibniz Institute DSMZ, thereby also integrating the Prokaryotic Nomenclature Up-to-date service. References External links List of Prokaryotic names with Standing in Nomenclature
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Anaerobic Organism
An anaerobic organism or anaerobe is any organism that does not require molecular oxygen for growth. It may react negatively or even die if free oxygen is present. In contrast, an aerobic organism (aerobe) is an organism that requires an oxygenated environment. Anaerobes may be unicellular (e.g. protozoans, bacteria) or multicellular. Most fungi are obligate aerobes, requiring oxygen to survive. However, some species, such as the Chytridiomycota that reside in the rumen of cattle, are obligate anaerobes; for these species, anaerobic respiration is used because oxygen will disrupt their metabolism or kill them. Deep waters of the ocean are a common anoxic environment. First observation In his letter of 14 June 1680 to The Royal Society, Antonie van Leeuwenhoek described an experiment he carried out by filling two identical glass tubes about halfway with crushed pepper powder, to which some clean rain water was added. Van Leeuwenhoek sealed one of the glass tubes using a flame an ...
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Amazon River
The Amazon River (, ; es, Río Amazonas, pt, Rio Amazonas) in South America is the largest river by discharge volume of water in the world, and the disputed longest river system in the world in comparison to the Nile. The headwaters of the Apurímac River on Nevado Mismi had been considered for nearly a century as the Amazon basin's most distant source, until a 2014 study found it to be the headwaters of the Mantaro River on the Cordillera Rumi Cruz in Peru. The Mantaro and Apurímac rivers join, and with other tributaries form the Ucayali River, which in turn meets the Marañón River upstream of Iquitos, Peru, forming what countries other than Brazil consider to be the main stem of the Amazon. Brazilians call this section the Solimões River above its confluence with the Rio Negro forming what Brazilians call the Amazon at the Meeting of Waters ( pt, Encontro das Águas) at Manaus, the largest city on the river. The Amazon River has an average discharge of about – ...
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Hentriacontanonaene
Hentriacontanonaene is a long-chain polyunsaturated hydrocarbon produced by numerous gamma-proteobacteria primarily from the marine environment. Hentriacontanonaene was originally isolated from bacterial isolates from Antarctic sea ice cores. All isolated bacteria that produced hentriacontanonaene also produced the polyunsaturated fatty acids eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA). Given its polyunsaturated nature it has been proposed that this molecule is produced as part of a response to maintain optimal membrane fluidity. Biosynthesis The biosynthesis of this compound was initially identified by its similarity to other known pathways found in bacteria that produce similar long-chain hydrocarbons. Production of monounsaturated and tri-unsaturated long-chain hydrocarbons in various microbial lineages has been attributed to the ''oleABCD'' gene cluster. In this pathway two acyl-CoA or acyl-ACP are condensed using a non-decarboxylative Claisen condensation t ...
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