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ReScience C
''ReScience C'' is a journal created in 2015 by Nicolas Rougier and Konrad Hinsen with the aim of publishing researchers' attempts to replicate computations made by other authors, using independently written, free and open-source software (FOSS), with an open process of peer review. The journal states that requiring the replication software to be free and open-source ensures the reproducibility of the original research. Creation ''ReScience C'' was created in 2015 by Nicolas Rougier and Konrad Hinsen in the context of the replication crisis of the early 2010s, in which concern about difficulty in replicating (different data or details of method) or reproducing (same data, same method) peer-reviewed, published research papers was widely discussed. ''ReScience Cs scope is computational research, with the motivation that journals rarely require the provision of source code, and when source code is provided, it is rarely checked against the results claimed in the research article. Pol ...
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Reproducibility
Reproducibility, also known as replicability and repeatability, is a major principle underpinning the scientific method. For the findings of a study to be reproducible means that results obtained by an experiment or an observational study or in a statistical analysis of a data set should be achieved again with a high degree of reliability when the study is replicated. There are different kinds of replication but typically replication studies involve different researchers using the same methodology. Only after one or several such successful replications should a result be recognized as scientific knowledge. With a narrower scope, ''reproducibility'' has been introduced in computational sciences: Any results should be documented by making all data and code available in such a way that the computations can be executed again with identical results. In recent decades, there has been a rising concern that many published scientific results fail the test of reproducibility, evoking a r ...
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Software Heritage
Software Heritage provides a service for archiving and referencing historical and contemporary software with a focus on human readable source code. The site was unveiled in 2016 by Inria and is supported by UNESCO. The project itself is structured as a nonprofit multistakeholder initiative. Overview The stated mission of Software Heritage is to collect, preserve and share all software that is publicly available in source code form, with the goal of building a common, shared infrastructure at the service of industry, research, culture and society as a whole. Software source code is collected by crawling code hosting platforms, like GitHub, GitLab.com or Bitbucket, and package archives, like npm or PyPI, and ingested into a special data structure, a Merkle DAG, that is the core of the archive. Each artifact in the archive is associated with an identifier called a SWHID. In order to increase the chances of preserving the Software Heritage archive over the long term, a mirror ...
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Metascience
Metascience (also known as meta-research) is the use of scientific methodology to study science itself. Metascience seeks to increase the quality of scientific research while reducing inefficiency. It is also known as "''research on research''" and "''the science of science''", as it uses research methods to study how research is done and find where improvements can be made. Metascience concerns itself with all fields of research and has been described as "a bird's eye view of science". In the words of John Ioannidis, "Science is the best thing that has happened to human beings ... but we can do it better." In 1966, an early meta-research paper examined the statistical methods of 295 papers published in ten high-profile medical journals. It found that "in almost 73% of the reports read ... conclusions were drawn when the justification for these conclusions was invalid." Meta-research in the following decades found many methodological flaws, inefficiencies, and poor practices in r ...
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English-language Journals
English is a West Germanic languages, West Germanic language of the Indo-European language family, with its earliest forms spoken by the inhabitants of early medieval England. It is named after the Angles, one of the ancient Germanic peoples that migrated to the island of Great Britain. Existing on a dialect continuum with Scots language, Scots, and then closest related to the Low German, Low Saxon and Frisian languages, English is Genetic relationship (linguistics), genealogically West Germanic language, West Germanic. However, its vocabulary is also distinctively influenced by Langues d'oïl, dialects of France (about List of English words of French origin, 29% of Modern English words) and Latin (also about 29%), plus some grammar and a small amount of core vocabulary influenced by Old Norse (a North Germanic language). Speakers of English are called Anglophones. The earliest forms of English, collectively known as Old English, evolved from a group of West Germanic (Ingvae ...
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PeerJ Computer Science
''PeerJ'' is an open access peer-reviewed scientific mega journal covering research in the biological and medical sciences. It is published by a company of the same name that was co-founded by CEO Jason Hoyt (formerly at Mendeley) and publisher Peter Binfield (formerly at '' PLOS One''), with initial financial backing of US$950,000 from O'Reilly Media's O'Reilly AlphaTech Ventures, and later funding from Sage Publishing. PeerJ officially launched in June 2012, started accepting submissions on December 3, 2012, and published its first articles on February 12, 2013. The company is a member of CrossRef, CLOCKSS, ORCID, and the Open Access Scholarly Publishers Association. The company's offices are in Corte Madera (California, USA), and London (Great Britain). Submitted research is judged solely on scientific and methodological soundness (as at '' PLoS ONE''), with a facility for peer reviews to be published alongside each paper. Business model ''PeerJ'' uses a business model th ...
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Nature (journal)
''Nature'' is a British weekly scientific journal founded and based in London, England. As a multidisciplinary publication, ''Nature'' features peer-reviewed research from a variety of academic disciplines, mainly in science and technology. It has core editorial offices across the United States, continental Europe, and Asia under the international scientific publishing company Springer Nature. ''Nature'' was one of the world's most cited scientific journals by the Science Edition of the 2019 ''Journal Citation Reports'' (with an ascribed impact factor of 42.778), making it one of the world's most-read and most prestigious academic journals. , it claimed an online readership of about three million unique readers per month. Founded in autumn 1869, ''Nature'' was first circulated by Norman Lockyer and Alexander Macmillan as a public forum for scientific innovations. The mid-20th century facilitated an editorial expansion for the journal; ''Nature'' redoubled its efforts in exp ...
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Peer Review
Peer review is the evaluation of work by one or more people with similar competencies as the producers of the work (peers). It functions as a form of self-regulation by qualified members of a profession within the relevant field. Peer review methods are used to maintain quality standards, improve performance, and provide credibility. In academia, scholarly peer review is often used to determine an academic paper's suitability for publication. Peer review can be categorized by the type of activity and by the field or profession in which the activity occurs, e.g., medical peer review. It can also be used as a teaching tool to help students improve writing assignments. Henry Oldenburg (1619–1677) was a German-born British philosopher who is seen as the 'father' of modern scientific peer review. Professional Professional peer review focuses on the performance of professionals, with a view to improving quality, upholding standards, or providing certification. In academia, peer ...
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Zenodo
Zenodo is a general-purpose open repository developed under the European OpenAIRE program and operated by CERN. It allows researchers to deposit research papers, data sets, research software, reports, and any other research related digital artefacts. For each submission, a persistent digital object identifier (DOI) is minted, which makes the stored items easily citeable. Characteristics Zenodo was launched on May 8th 2013 as the successor of the ''OpenAIRE Orphan Records Repository'' to let researchers in any subject area comply with any open science deposit requirement absent an institutional repository. It was relaunched as Zenodo in 2015 to provide a place for researchers to deposit datasets; it allows the uploading of files up to 50 GB. It provides a DOI to datasets and other submitted data that lacks one to make the work easier to cite and supports various data and license types. One supported source is GitHub repositories. Zenodo is supported by CERN "as a margina ...
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GitHub
GitHub, Inc. () is an Internet hosting service for software development and version control using Git. It provides the distributed version control of Git plus access control, bug tracking, software feature requests, task management, continuous integration, and wikis for every project. Headquartered in California, it has been a subsidiary of Microsoft since 2018. It is commonly used to host open source software development projects. As of June 2022, GitHub reported having over 83 million developers and more than 200 million repositories, including at least 28 million public repositories. It is the largest source code host . History GitHub.com Development of the GitHub.com platform began on October 19, 2007. The site was launched in April 2008 by Tom Preston-Werner, Chris Wanstrath, P. J. Hyett and Scott Chacon after it had been made available for a few months prior as a beta release. GitHub has an annual keynote called GitHub Universe. Organizational ...
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Replication Crisis
The replication crisis (also called the replicability crisis and the reproducibility crisis) is an ongoing methodological crisis in which the results of many scientific studies are difficult or impossible to reproduce. Because the reproducibility of empirical results is an essential part of the scientific method, such failures undermine the credibility of theories building on them and potentially call into question substantial parts of scientific knowledge. The replication crisis is frequently discussed in relation to psychology and medicine, where considerable efforts have been undertaken to reinvestigate classic results, to determine both their reliability and, if found unreliable, the reasons for the failure. Data strongly indicate that other natural, and social sciences are affected as well. The phrase ''replication crisis'' was coined in the early 2010s as part of a growing awareness of the problem. Considerations of causes and remedies have given rise to a new scientific ...
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Reproducibility
Reproducibility, also known as replicability and repeatability, is a major principle underpinning the scientific method. For the findings of a study to be reproducible means that results obtained by an experiment or an observational study or in a statistical analysis of a data set should be achieved again with a high degree of reliability when the study is replicated. There are different kinds of replication but typically replication studies involve different researchers using the same methodology. Only after one or several such successful replications should a result be recognized as scientific knowledge. With a narrower scope, ''reproducibility'' has been introduced in computational sciences: Any results should be documented by making all data and code available in such a way that the computations can be executed again with identical results. In recent decades, there has been a rising concern that many published scientific results fail the test of reproducibility, evoking a r ...
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