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Pholiotina Atrocyanea
''Pholiotina'' is a genus of small agaric fungi. It was circumscribed by Swiss mycologist Victor Fayod in 1889 for '' Conocybe''-like species with partial veils. The genus has since been expanded to include species lacking partial veils. Taxonomic details The genus ''Pholiotina'' is defined as small thin '' Mycena''-like mushrooms, with an hymenoderm pileipellis, a dry cap surface, cystidia that are sub-capitate to blunt, and spores which are rusty brown in deposit. Spores of mushrooms of this genus are thick walled, smooth and have a germ pore. Victor Fayod designated ''Pholiotina blattaria'' as the type species of ''Pholiotina'', but this name was used for many different species of ''Pholiotina'' with partial veils and it is unclear which species is really ''P. blattaria'', which makes it a nomen dubium. He designated a lectotype for this species in the same publication, and microscopic examination revealed that this specimen belongs to the species ''P. vexans'', ...
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Pholiotina Smithii
''Pholiotina smithii'' is a rare member of the genus ''Pholiotina'' which contains the hallucinogenic alkaloid psilocybin. It was formerly known as ''Galera cyanopes'' '' Photography and microscopy by Jordan luebben''. Description *Cap: 0.3 - 1(1.3) cm across Conic to convex but expands to nearly plane in age, with a distinct umbo, smooth, ochraceous tawny to cinnamon-brown, darker at edges, glistening when wet, hygrophanous, even to striate when moist. Lightens when it dries, turning a tan color. *Gills: adnate to adnexed, crowded to subdistant, narrow to moderately broad, pale grayish yellow to brown with whitish edges, darkening to rusty cinnamon brown in age. *Spores: Cinnamon brown, (6.5)7.0 - 9.0 x 4.0 - 4.5(5) micrometers smooth and ellipsoid with thick walls and a small but distinct germ-pore. * Stipe: (1)2 to 5(7.5) cm long, .75 - 1(1.5) mm thick, mostly equal but often slightly swollen at the base. Fragile, whitish with fine fibrils but becoming smooth, lacks an annu ...
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Cystidia
A cystidium (plural cystidia) is a relatively large cell found on the sporocarp of a basidiomycete (for example, on the surface of a mushroom gill), often between clusters of basidia. Since cystidia have highly varied and distinct shapes that are often unique to a particular species or genus, they are a useful micromorphological characteristic in the identification of basidiomycetes. In general, the adaptive significance of cystidia is not well understood. Classification of cystidia By position Cystidia may occur on the edge of a lamella (or analogous hymenophoral structure) (cheilocystidia), on the face of a lamella (pleurocystidia), on the surface of the cap (dermatocystidia or pileocystidia), on the margin of the cap (circumcystidia) or on the stipe (caulocystidia). Especially the pleurocystidia and cheilocystidia are important for identification within many genera. Sometimes the cheilocystidia give the gill edge a distinct colour which is visible to the naked eye or wit ...
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Series (botany)
In botany and plant taxonomy, a series is a subdivision of a genus, a taxonomic rank below that of section (and subsection) but above that of species. Sections and/or series are typically used to help organize very large genera, which may have hundreds of species. Cultivar marketing The term "series" is also used (in seed marketing) for groupings of cultivars, but this term has no formal status with that meaning in the ''ICNCP The ''International Code of Nomenclature for Cultivated Plants'' (ICNCP), is a guide to the rules and regulations for naming cultigens, plants whose origin or selection is primarily due to intentional human activity. It is also known as Cultivate ...''.Glossary in References Botanical nomenclature Plant taxonomy {{Botany-stub ...
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Section (biology)
In biology a section ( la, sectio) is a taxonomic rank that is applied differently in botany and zoology. In botany Within flora (plants), 'section' refers to a ''botanical'' rank below the genus, but above the species: * Domain > Kingdom > Division > Class > Order > Family > Tribe > Genus > Subgenus > Section > Subsection > Species In zoology Within fauna (animals), 'section' refers to a ''zoological'' rank below the order, but above the family: * Domain > Kingdom > Phylum > Class > Order > Section > Family > Tribe > Genus > Species In bacteriology The International Code of Nomenclature for Bacteria The International Code of Nomenclature of Prokaryotes (ICNP) formerly the International Code of Nomenclature of Bacteria (ICNB) or Bacteriological Code (BC) governs the scientific names for Bacteria and Archaea.P. H. A. Sneath, 2003. A short histor ... states that the Section rank is an informal one, between the subgenus and species (as in botany). References Botanical no ...
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Classification (biology)
In biology, taxonomy () is the science, scientific study of naming, defining (Circumscription (taxonomy), circumscribing) and classifying groups of biological organisms based on shared characteristics. Organisms are grouped into taxon, taxa (singular: taxon) and these groups are given a taxonomic rank; groups of a given rank can be aggregated to form a more inclusive group of higher rank, thus creating a taxonomic hierarchy. The principal ranks in modern use are domain (biology), domain, kingdom (biology), kingdom, phylum (''division'' is sometimes used in botany in place of ''phylum''), class (biology), class, order (biology), order, family (biology), family, genus, and species. The Swedish botanist Carl Linnaeus is regarded as the founder of the current system of taxonomy, as he developed a ranked system known as Linnaean taxonomy for categorizing organisms and binomial nomenclature for naming organisms. With advances in the theory, data and analytical technology of biologica ...
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Clades
A clade (), also known as a monophyletic group or natural group, is a group of organisms that are monophyletic – that is, composed of a common ancestor and all its lineal descendants – on a phylogenetic tree. Rather than the English term, the equivalent Latin term ''cladus'' (plural ''cladi'') is often used in taxonomical literature. The common ancestor may be an individual, a population, or a species (extinct or extant). Clades are nested, one in another, as each branch in turn splits into smaller branches. These splits reflect evolutionary history as populations diverged and evolved independently. Clades are termed monophyletic (Greek: "one clan") groups. Over the last few decades, the cladistic approach has revolutionized biological classification and revealed surprising evolutionary relationships among organisms. Increasingly, taxonomists try to avoid naming taxa that are not clades; that is, taxa that are not monophyletic. Some of the relationships between organisms t ...
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Polyphyletic
A polyphyletic group is an assemblage of organisms or other evolving elements that is of mixed evolutionary origin. The term is often applied to groups that share similar features known as homoplasies, which are explained as a result of convergent evolution. The arrangement of the members of a polyphyletic group is called a polyphyly .. ource for pronunciation./ref> It is contrasted with monophyly and paraphyly. For example, the biological characteristic of warm-bloodedness evolved separately in the ancestors of mammals and the ancestors of birds; "warm-blooded animals" is therefore a polyphyletic grouping. Other examples of polyphyletic groups are algae, C4 photosynthetic plants, and edentates. Many taxonomists aim to avoid homoplasies in grouping taxa together, with a goal to identify and eliminate groups that are found to be polyphyletic. This is often the stimulus for major revisions of the classification schemes. Researchers concerned more with ecology than with systema ...
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Molecular Phylogenetics
Molecular phylogenetics () is the branch of phylogeny that analyzes genetic, hereditary molecular differences, predominantly in DNA sequences, to gain information on an organism's evolutionary relationships. From these analyses, it is possible to determine the processes by which diversity among species has been achieved. The result of a molecular phylogenetic analysis is expressed in a phylogenetic tree. Molecular phylogenetics is one aspect of molecular systematics, a broader term that also includes the use of molecular data in taxonomy and biogeography. Molecular phylogenetics and molecular evolution correlate. Molecular evolution is the process of selective changes (mutations) at a molecular level (genes, proteins, etc.) throughout various branches in the tree of life (evolution). Molecular phylogenetics makes inferences of the evolutionary relationships that arise due to molecular evolution and results in the construction of a phylogenetic tree. History The theoretical frame ...
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Lectotype
In biology, a type is a particular specimen (or in some cases a group of specimens) of an organism to which the scientific name of that organism is formally attached. In other words, a type is an example that serves to anchor or centralizes the defining features of that particular taxon. In older usage (pre-1900 in botany), a type was a taxon rather than a specimen. A taxon is a scientifically named grouping of organisms with other like organisms, a set that includes some organisms and excludes others, based on a detailed published description (for example a species description) and on the provision of type material, which is usually available to scientists for examination in a major museum research collection, or similar institution. Type specimen According to a precise set of rules laid down in the International Code of Zoological Nomenclature (ICZN) and the International Code of Nomenclature for algae, fungi, and plants (ICN), the scientific name of every taxon is almost a ...
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Nomen Dubium
In binomial nomenclature, a ''nomen dubium'' (Latin for "doubtful name", plural ''nomina dubia'') is a scientific name that is of unknown or doubtful application. Zoology In case of a ''nomen dubium'' it may be impossible to determine whether a specimen belongs to that group or not. This may happen if the original type series (i. e. holotype, isotype, syntype or paratype) is lost or destroyed. The zoological and botanical codes allow for a new type specimen, or neotype, to be chosen in this case. A name may also be considered a ''nomen dubium'' if its name-bearing type is fragmentary or lacking important diagnostic features (this is often the case for species known only as fossils). To preserve stability of names, the ''International Code of Zoological Nomenclature'' allows a new type specimen, or neotype, to be chosen for a ''nomen dubium'' in this case. 75.5. Replacement of unidentifiable name-bearing type by a neotype. When an author considers that the taxonomic identity of a ...
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Type Species
In zoological nomenclature, a type species (''species typica'') is the species name with which the name of a genus or subgenus is considered to be permanently taxonomically associated, i.e., the species that contains the biological type specimen(s). Article 67.1 A similar concept is used for suprageneric groups and called a type genus. In botanical nomenclature, these terms have no formal standing under the code of nomenclature, but are sometimes borrowed from zoological nomenclature. In botany, the type of a genus name is a specimen (or, rarely, an illustration) which is also the type of a species name. The species name that has that type can also be referred to as the type of the genus name. Names of genus and family ranks, the various subdivisions of those ranks, and some higher-rank names based on genus names, have such types.
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