Phanerochaete
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Phanerochaete
''Phanerochaete'' is a genus of crust fungi in the family Phanerochaetaceae. Taxonomy The genus was circumscribed by Finnish mycologist Petter Karsten in 1889. Marinus Anton Donk redefined the limits of the genus in two publications in 1957 and 1962. ''Phanerochaete'' has traditionally been delimited based on the overall morphology of the fruit body, as well as microscopic characteristics including the nature of the hyphal structure, cystidia, and spores. Molecular analyses demonstrate that the genus is polyphyletic, containing members placed throughout the phlebioid clade of the Polyporales. The genus name is derived from the Greek words φανεφός ("distinct") and χαίτη ("hair"). Description ''Phanerochaete'' species have membranaceous, crust-like fruit bodies. The hyphal system is monomitic, with simple-septate generative hyphae; single or multiple clamps may be present in the subiculum. The basidia (spore-bearing cells) are club-shaped and smooth. Spores of th ...
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Phanerochaetaceae
The Phanerochaetaceae are a family of mostly crust fungi in the order Polyporales. Taxonomy Phanerochaetaceae was first conceived by Swedish mycologist John Eriksson in 1958 as the subfamily Phanerochaetoideae of the Corticiaceae. It was later published validly by Erast Parmasto in 1986, and raised to familial status by Swiss mycologist Walter Jülich in 1982. The type genus is ''Phanerochaete''. In 2007, Karl-Henrik Larsson proposed using the name Phanerochaetaceae to refer to the clade of crust fungi clustered near ''Phanerochaete''. In 2013, a more extensive molecular analysis showed that the Phanerochaetaceae were a subclade of the large phlebioid clade, which also contains members of the families Meruliaceae and Irpicaceae. The generic limits of ''Phanerochaete'' were revised in 2015, and new genera were added in 2016. , Index Fungorum accepts 30 genera and 367 species in the family. Description Most Phanerochaetaceae species are crust-like. Their hyphal system is mo ...
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Lignin Peroxidase
In enzymology, a lignin peroxidase () is an enzyme that catalyzes the chemical reaction :1,2-bis(3,4-dimethoxyphenyl)propane-1,3-diol + H2O2 \rightleftharpoons 3,4-dimethoxybenzaldehyde + 1-(3,4-dimethoxyphenyl)ethane-1,2-diol + H2O Thus, the two substrates of this enzyme are 1,2-bis(3,4-dimethoxyphenyl)propane-1,3-diol and H2O2, whereas its 3 products are 3,4-dimethoxybenzaldehyde, 1-(3,4-dimethoxyphenyl)ethane-1,2-diol, and H2O. This enzyme belongs to the family of oxidoreductases, specifically those acting on a peroxide as acceptor (peroxidases) and can be included in the broad category of ligninases. The systematic name of this enzyme class is 1,2-bis(3,4-dimethoxyphenyl)propane-1,3-diol:hydrogen-peroxide oxidoreductase. Other names in common use include diarylpropane oxygenase, ligninase I, diarylpropane peroxidase, LiP, diarylpropane:oxygen,hydrogen-peroxide oxidoreductase (C-C-bond-cleaving). It employs one cofactor, heme. Background Lignin is highly resistant to ...
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Polyporales
The Polyporales are an order of about 1800 species of fungi in the division Basidiomycota. The order includes some (but not all) polypores as well as many corticioid fungi and a few agarics (mainly in the genus ''Lentinus''). Many species within the order are saprotrophic, most of them wood-rotters. Some genera, such as ''Ganoderma'' and ''Fomes'', contain species that attack living tissues and then continue to degrade the wood of their dead hosts. Those of economic importance include several important pathogens of trees and a few species that cause damage by rotting structural timber. Some of the Polyporales are commercially cultivated and marketed for use as food items or in traditional Chinese medicine. Taxonomy History The order was originally proposed in 1926 by Swiss mycologist Ernst Albert Gäumann to accommodate species within the phylum Basidiomycota producing basidiocarps (fruit bodies) showing a gymnocapous mode of development (forming the spore-bearing surface ext ...
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Wood-decay Fungus
A wood-decay or xylophagous fungus is any species of fungus that digests moist wood, causing it to rot. Some species of wood-decay fungi attack dead wood, such as brown rot, and some, such as ''Armillaria'' (honey fungus), are parasitic and colonize living trees. Excessive moisture above the fibre saturation point in wood is required for fungal colonization and proliferation. In nature, this process causes the breakdown of complex molecules and leads to the return of nutrients to the soil. Wood-decay fungi consume wood in various ways; for example, some attack the carbohydrates in wood and some others decay lignin. The rate of decay of wooden materials in various climates can be estimated by empirical models.Viitanen, T. et al. (2010). Towards modelling of decay risk of wooden materials. European Journal of Wood and Wood Products 68:303-313. Wood-decay fungi can be classified according to the type of decay that they cause. The best-known types are brown rot, soft rot, and whit ...
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Lignin
Lignin is a class of complex organic polymers that form key structural materials in the support tissues of most plants. Lignins are particularly important in the formation of cell walls, especially in wood and bark, because they lend rigidity and do not rot easily. Chemically, lignins are polymers made by cross-linking phenolic precursors. History Lignin was first mentioned in 1813 by the Swiss botanist A. P. de Candolle, who described it as a fibrous, tasteless material, insoluble in water and alcohol but soluble in weak alkaline solutions, and which can be precipitated from solution using acid. He named the substance “lignine”, which is derived from the Latin word '' lignum'', meaning wood. It is one of the most abundant organic polymers on Earth, exceeded only by cellulose. Lignin constitutes 30% of non-fossil organic carbon on Earth, and 20 to 35% of the dry mass of wood. Lignin is present in red algae, which suggest that the common ancestor of plants and red algae ...
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Elias Magnus Fries
Elias Magnus Fries (15 August 1794 – 8 February 1878) was a Swedish mycologist and botanist. Career Fries was born at Femsjö (Hylte Municipality), Småland, the son of the pastor there. He attended school in Växjö. He acquired an extensive knowledge of flowering plants from his father. In 1811 Fries entered Lund University where he obtained a doctorate in 1814. In the same year he was appointed an associate professorship in botany. He was elected a member of the Royal Swedish Academy of Sciences, and in 1824, became a full professor. In 1834 he became Borgström professor (Swed. ''Borgströmianska professuren'', a chair endowed by Erik Eriksson Borgström, 1708–1770) in applied economics at Uppsala University. The position was changed to "professor of botany and applied economics" in 1851. He was elected a Foreign Honorary Member of the American Academy of Arts and Sciences in 1849. That year he was also appointed director of the Uppsala University Botanica ...
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Clamp Connection
A clamp connection is a hook-like structure formed by growing hyphal cells of certain fungi. It is a characteristic feature of Basidiomycetes fungi. It is created to ensure that each cell, or segment of hypha separated by septa (cross walls), receives a set of differing nuclei, which are obtained through mating of hyphae of differing sexual types. It is used to maintain genetic variation within the hypha much like the mechanisms found in crozier (hook) during sexual reproduction. Formation Clamp connections are formed by the terminal hypha during elongation. Before the clamp connection is formed this terminal segment contains two nuclei. Once the terminal segment is long enough it begins to form the clamp connection. At the same time, each nucleus undergoes mitotic division to produce two daughter nuclei. As the clamp continues to develop it uptakes one of the daughter (green circle) nuclei and separates it from its sister nucleus. While this is occurring the remaining nuclei ...
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Manganese Peroxidase
Manganese is a chemical element with the symbol Mn and atomic number 25. It is a hard, brittle, silvery metal, often found in minerals in combination with iron. Manganese is a transition metal with a multifaceted array of industrial alloy uses, particularly in stainless steels. It improves strength, workability, and resistance to wear. Manganese oxide is used as an oxidising agent; as a rubber additive; and in glass making, fertilisers, and ceramics. Manganese sulfate can be used as a fungicide. Manganese is also an essential human dietary element, important in macronutrient metabolism, bone formation, and free radical defense systems. It is a critical component in dozens of proteins and enzymes. It is found mostly in the bones, but also the liver, kidneys, and brain. In the human brain, the manganese is bound to manganese metalloproteins, most notably glutamine synthetase in astrocytes. Manganese was first isolated in 1774. It is familiar in the laboratory in the form of the ...
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Carbon Dioxide
Carbon dioxide (chemical formula ) is a chemical compound made up of molecules that each have one carbon atom covalently double bonded to two oxygen atoms. It is found in the gas state at room temperature. In the air, carbon dioxide is transparent to visible light but absorbs infrared radiation, acting as a greenhouse gas. It is a trace gas in Earth's atmosphere at 421 parts per million (ppm), or about 0.04% by volume (as of May 2022), having risen from pre-industrial levels of 280 ppm. Burning fossil fuels is the primary cause of these increased CO2 concentrations and also the primary cause of climate change.IPCC (2022Summary for policy makersiClimate Change 2022: Mitigation of Climate Change. Contribution of Working Group III to the Sixth Assessment Report of the Intergovernmental Panel on Climate Change Cambridge University Press, Cambridge, United Kingdom and New York, NY, USA Carbon dioxide is soluble in water and is found in groundwater, lakes, ice caps, ...
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Hardwood
Hardwood is wood from dicot trees. These are usually found in broad-leaved temperate and tropical forests. In temperate and boreal latitudes they are mostly deciduous, but in tropics and subtropics mostly evergreen. Hardwood (which comes from angiosperm trees) contrasts with softwood (which is from gymnosperm trees). Characteristics Hardwoods are produced by angiosperm trees that reproduce by flowers, and have broad leaves. Many species are deciduous. Those of temperate regions lose their leaves every autumn as temperatures fall and are dormant in the winter, but those of tropical regions may shed their leaves in response to seasonal or sporadic periods of drought. Hardwood from deciduous species, such as oak, normally shows annual growth rings, but these may be absent in some tropical hardwoods. Hardwoods have a more complex structure than softwoods and are often much slower growing as a result. The dominant feature separating "hardwoods" from softwoods is the presence o ...
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Conifer
Conifers are a group of conifer cone, cone-bearing Spermatophyte, seed plants, a subset of gymnosperms. Scientifically, they make up the phylum, division Pinophyta (), also known as Coniferophyta () or Coniferae. The division contains a single extant class (biology), class, Pinopsida. All Neontology, extant conifers are perennial plant, perennial woody plants with secondary growth. The great majority are trees, though a few are shrubs. Examples include Cedrus, cedars, Pseudotsuga, Douglas-firs, Cupressaceae, cypresses, firs, junipers, Agathis, kauri, larches, pines, Tsuga, hemlocks, Sequoioideae, redwoods, spruces, and Taxaceae, yews.Campbell, Reece, "Phylum Coniferophyta". Biology. 7th. 2005. Print. P. 595 As of 1998, the division Pinophyta was estimated to contain eight families, 68 genera, and 629 living species. Although the total number of species is relatively small, conifers are ecology, ecologically important. They are the dominant plants over large areas of land, most ...
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Ellipsoid
An ellipsoid is a surface that may be obtained from a sphere by deforming it by means of directional scalings, or more generally, of an affine transformation. An ellipsoid is a quadric surface;  that is, a surface that may be defined as the zero set of a polynomial of degree two in three variables. Among quadric surfaces, an ellipsoid is characterized by either of the two following properties. Every planar cross section is either an ellipse, or is empty, or is reduced to a single point (this explains the name, meaning "ellipse-like"). It is bounded, which means that it may be enclosed in a sufficiently large sphere. An ellipsoid has three pairwise perpendicular axes of symmetry which intersect at a center of symmetry, called the center of the ellipsoid. The line segments that are delimited on the axes of symmetry by the ellipsoid are called the ''principal axes'', or simply axes of the ellipsoid. If the three axes have different lengths, the figure is a triaxial ellipsoid (r ...
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