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Lokiarcheota
Lokiarchaeota is a proposed phylum of the Archaea. The phylum includes all members of the group previously named Deep Sea Archaeal Group (DSAG), also known as Marine Benthic Group B (MBG-B). Lokiarchaeota is part of the superphylum Asgard containing the phyla: Lokiarchaeota, Thorarchaeota, Odinarchaeota, Heimdallarchaeota, and Helarchaeota. A phylogenetic analysis disclosed a monophyletic grouping of the Lokiarchaeota with the eukaryotes. The analysis revealed several genes with cell membrane-related functions. The presence of such genes support the hypothesis of an archaeal host for the emergence of the eukaryotes; the eocyte-like scenarios. Lokiarchaeota was introduced in 2015 after the identification of a candidate genome in a metagenomic analysis of a mid-oceanic sediment sample. This analysis suggests the existence of a genus of unicellular life dubbed ''Lokiarchaeum''. The sample was taken near a hydrothermal vent at a vent field known as Loki's Castle located at t ...
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Heimdallarchaeota
Asgard or Asgardarchaeota is a proposed superphylum consisting of a group of archaea that includes Lokiarchaeota, Thorarchaeota, Odinarchaeota, and Heimdallarchaeota. It appears the eukaryotes emerged within the Asgard, in a branch containing the Heimdallarchaeota. This supports the two-domain system of classification over the three-domain system. Discovery and nomenclature In the summer of 2010, sediments were analysed from a gravity core taken in the rift valley on the Knipovich ridge in the Arctic Ocean, near the Loki's Castle hydrothermal vent site. Specific sediment horizons previously shown to contain high abundances of novel archaeal lineages were subjected to metagenomic analysis. In 2015, an Uppsala University-led team proposed the Lokiarchaeota phylum based on phylogenetic analyses using a set of highly conserved protein-coding genes. Through a reference to the hydrothermal vent complex from which the first genome sample originated, the name refers to Loki, the Nors ...
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Asgard (archaea)
Asgard or Asgardarchaeota is a proposed superphylum consisting of a group of archaea that includes Lokiarchaeota, Thorarchaeota, Odinarchaeota, and Heimdallarchaeota. It appears the eukaryotes emerged within the Asgard, in a branch containing the Heimdallarchaeota. This supports the two-domain system of classification over the three-domain system. Discovery and nomenclature In the summer of 2010, sediments were analysed from a gravity core taken in the rift valley on the Knipovich ridge in the Arctic Ocean, near the Loki's Castle hydrothermal vent site. Specific sediment horizons previously shown to contain high abundances of novel archaeal lineages were subjected to metagenomic analysis. In 2015, an Uppsala University-led team proposed the Lokiarchaeota phylum based on phylogenetic analyses using a set of highly conserved protein-coding genes. Through a reference to the hydrothermal vent complex from which the first genome sample originated, the name refers to Loki, the Nors ...
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Odinarchaeota
Asgard or Asgardarchaeota is a proposed superphylum consisting of a group of archaea that includes Lokiarchaeota, Thorarchaeota, Odinarchaeota, and Heimdallarchaeota. It appears the eukaryotes emerged within the Asgard, in a branch containing the Heimdallarchaeota. This supports the two-domain system of classification over the three-domain system. Discovery and nomenclature In the summer of 2010, sediments were analysed from a gravity core taken in the rift valley on the Knipovich ridge in the Arctic Ocean, near the Loki's Castle hydrothermal vent site. Specific sediment horizons previously shown to contain high abundances of novel archaeal lineages were subjected to metagenomic analysis. In 2015, an Uppsala University-led team proposed the Lokiarchaeota phylum based on phylogenetic analyses using a set of highly conserved protein-coding genes. Through a reference to the hydrothermal vent complex from which the first genome sample originated, the name refers to Loki, the Nors ...
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Loki
Loki is a god in Norse mythology. According to some sources, Loki is the son of Fárbauti (a jötunn) and Laufey (mentioned as a goddess), and the brother of Helblindi and Býleistr. Loki is married to Sigyn and they have two sons, Narfi or Nari and Váli. By the jötunn Angrboða, Loki is the father of Hel, the wolf Fenrir, and the world serpent Jörmungandr. In the form of a mare, Loki was impregnated by the stallion Svaðilfari and gave birth to the eight-legged horse Sleipnir. Loki's relation with the gods varies by source; he sometimes assists the gods and sometimes behaves maliciously towards them. Loki is a shape shifter and in separate incidents appears in the form of a salmon, a mare, a fly, and possibly an elderly woman named Þökk (Old Norse 'thanks'). Loki's positive relations with the gods end with his role in engineering the death of the god Baldr, and eventually, Odin's specially engendered son Váli binds Loki with the entrails of one of his sons; in the ''Pr ...
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Hydrothermal Vent
A hydrothermal vent is a fissure on the seabed from which geothermally heated water discharges. They are commonly found near volcanically active places, areas where tectonic plates are moving apart at mid-ocean ridges, ocean basins, and hotspots. Hydrothermal deposits are rocks and mineral ore deposits formed by the action of hydrothermal vents. Hydrothermal vents exist because the earth is both geologically active and has large amounts of water on its surface and within its crust. Under the sea, they may form features called black smokers or white smokers. Relative to the majority of the deep sea, the areas around hydrothermal vents are biologically more productive, often hosting complex communities fueled by the chemicals dissolved in the vent fluids. Chemosynthetic bacteria and Archaea form the base of the food chain, supporting diverse organisms, including giant tube worms, clams, limpets and shrimp. Active hydrothermal vents are thought to exist on Jupiter's moon Europa an ...
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Loki's Castle
Loki's Castle is a field of five active hydrothermal vents in the mid-Atlantic Ocean, located at 73 degrees north on the Mid-Atlantic Ridge between Greenland and Norway at a depth of . The vents were discovered in mid-July 2008 and are the most northerly black smokers to date. They are of geological interest as they occur in a relatively stable region of the Earth's crust, one with diminished tectonic forces and consequently fewer hydrothermal vents. Discovery The vents were discovered by a 25-person multinational scientific expedition of the University of Bergen, Norway, more than north of what were previously the northernmost known, discovered in 2005. The 2005 and 2008 expeditions were both led by geologist Rolf Pedersen of the university's Centre for Geobiology, aboard the research vessel ''G.O. Sars'' (named after the Norwegian marine biologist Georg Ossian Sars and launched in May 2003). The vents were located using a remotely controlled undersea vehicle. Activity The fi ...
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Mohns Ridge
Mohns is the surname of: *Arthur Mohns (1896-?), German footballer *Doug Mohns (born 1933), Canadian retired National Hockey League player * Greg Mohns (1950-2012), executive and coach in the Canadian Football League *Lloyd Mohns (1921-2005), Canadian who played in one National Hockey League game See also *Mohn (other) *Mohns Ridge Mohns is the surname of: *Arthur Mohns (1896-?), German footballer *Doug Mohns (born 1933), Canadian retired National Hockey League player * Greg Mohns (1950-2012), executive and coach in the Canadian Football League *Lloyd Mohns (1921-2005), Cana ..., a mid-ocean ridge in the Greenland Sea - see Greenland Plain {{surname, Mohns ...
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Arctic Ocean
The Arctic Ocean is the smallest and shallowest of the world's five major oceans. It spans an area of approximately and is known as the coldest of all the oceans. The International Hydrographic Organization (IHO) recognizes it as an ocean, although some oceanographers call it the Arctic Mediterranean Sea. It has been described approximately as an estuary of the Atlantic Ocean. It is also seen as the northernmost part of the all-encompassing World Ocean. The Arctic Ocean includes the North Pole region in the middle of the Northern Hemisphere and extends south to about 60°N. The Arctic Ocean is surrounded by Eurasia and North America, and the borders follow topographic features: the Bering Strait on the Pacific side and the Greenland Scotland Ridge on the Atlantic side. It is mostly covered by sea ice throughout the year and almost completely in winter. The Arctic Ocean's surface temperature and salinity vary seasonally as the ice cover melts and freezes; its salinity is t ...
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Core Sample
A core sample is a cylindrical section of (usually) a naturally-occurring substance. Most core samples are obtained by drilling with special drills into the substance, such as sediment or rock, with a hollow steel tube, called a core drill. The hole made for the core sample is called the "core hole". A variety of core samplers exist to sample different media under different conditions. More continue to be invented on a regular basis. In the coring process, the sample is pushed more or less intact into the tube. Removed from the tube in the laboratory, it is inspected and analyzed by different techniques and equipment depending on the type of data desired. Core samples can be taken to test the properties of manmade materials, such as concrete, ceramics, some metals and alloys, especially the softer ones. Core samples can also be taken of living things, including human beings, especially of a person's bones for microscopic examination to help diagnose diseases. Methods The compo ...
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Archaea
Archaea ( ; singular archaeon ) is a domain of single-celled organisms. These microorganisms lack cell nuclei and are therefore prokaryotes. Archaea were initially classified as bacteria, receiving the name archaebacteria (in the Archaebacteria kingdom), but this term has fallen out of use. Archaeal cells have unique properties separating them from the other two domains, Bacteria and Eukaryota. Archaea are further divided into multiple recognized phyla. Classification is difficult because most have not been isolated in a laboratory and have been detected only by their gene sequences in environmental samples. Archaea and bacteria are generally similar in size and shape, although a few archaea have very different shapes, such as the flat, square cells of ''Haloquadratum walsbyi''. Despite this morphological similarity to bacteria, archaea possess genes and several metabolic pathways that are more closely related to those of eukaryotes, notably for the enzymes involved ...
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Candidatus Prometheoarchaeum Syntrophicum SEM Cryo
In prokaryote nomenclature, ''Candidatus'' (Latin for candidate of Roman office) is used to name prokaryotic phyla that are well characterized but yet-uncultured. Contemporary sequencing approaches, such as 16S sequencing or metagenomics, provide much information about the analyzed organisms and thus allow to identify and characterize individual species. However, the majority of prokaryotic species remain uncultivable and hence inaccessible for further characterization in ''in vitro'' study. The recent discoveries of a multitude of candidate taxa has led to candidate phyla radiation expanding the tree of life through the new insights in bacterial diversity. Nomenclature History The initial International Code of Nomenclature of Prokaryotes as well as early revisions did not account for the possibility of identifying prokaryotes which were not yet cultivable. Therefore, the term ''Candidatus'' was proposed in the context of a conference of the International Committee on Systemati ...
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Metagenomics
Metagenomics is the study of genetic material recovered directly from environmental or clinical samples by a method called sequencing. The broad field may also be referred to as environmental genomics, ecogenomics, community genomics or microbiomics. While traditional microbiology and microbial genome sequencing and genomics rely upon cultivated clonal cultures, early environmental gene sequencing cloned specific genes (often the 16S rRNA gene) to produce a profile of diversity in a natural sample. Such work revealed that the vast majority of microbial biodiversity had been missed by cultivation-based methods. Because of its ability to reveal the previously hidden diversity of microscopic life, metagenomics offers a powerful lens for viewing the microbial world that has the potential to revolutionize understanding of the entire living world. As the price of DNA sequencing continues to fall, metagenomics now allows microbial ecology to be investigated at a much greater scale ...
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