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Linepithema Humile Virus 1
Linepithema humile virus-1 (LHUV-1) is a novel virus discovered to be actively replicating within the invasive Argentine ant (''Linepithema humile'') species. The Argentine ant is extremely invasive across the globe, invading all continents besides Antarctica with their mega-colony. The invasiveness of the ants is allowing the distribution of this virus, among others, into vulnerable honey bee populations which may be responsible for the overall colony collapse. Virus prevalence and distribution Linepithema humile virus-1 (LHUV-1) was found to be introduced by Argentine ants into New Zealand and Australia. Aside from the ants, the virus has also been reported in other species worldwide such as honeybees. Argentine ants host and act as a reservoir of ''Deformed wing virus'' (DWV), which is an agent implicated of honeybee deaths. A correlation and direct interaction between the honeybees and the Argentine ants occurs during invasion and raiding of the beehives. The DWV sequences ...
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Argentine Ant
The Argentine ant (''Linepithema humile''), formerly ''Iridomyrmex humilis'', is an ant native to northern Argentina, Uruguay, Paraguay, Bolivia and southern Brazil. It is an invasive species that has been established in many Mediterranean climate areas, inadvertently introduced by humans to many places, including South Africa, New Zealand, Japan, Easter Island, Australia, Europe, Hawaii, and the continental United States. Description The worker ants are long and can easily squeeze through cracks and holes as small as in size. Queens are long, much smaller than other species of ants. These ants will set up quarters in the ground, in cracks in concrete walls, in spaces between boards and timbers, even among belongings in human dwellings. In natural areas, they generally nest shallowly in loose leaf litter or beneath small stones, due to their poor ability to dig deeper nests. However, if a deeper nesting ant species abandons their nest, Argentine ant colonies will readily ...
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Deformed Wing Virus
''Deformed wing virus'' (DWV) is an RNA virus, one of 22 known viruses affecting honey bees. While most commonly infecting the honey bee, '' Apis mellifera'', it has also been documented in other bee species, like ''Bombus terrestris'', thus, indicating it may have a wider host specificity than previously anticipated. The virus was first isolated from a sample of symptomatic honeybees from Japan in the early 1980s and is currently distributed worldwide. It is found also in pollen baskets and commercially reared bumblebees. Its main vector in ''A. mellifera'' is the ''Varroa'' mite. It is named after what is usually the most obvious deformity it induces in the development of a honeybee pupa, which is shrunken and deformed wings, but other developmental deformities are often present. Genomics The viral genome was published in 2006. The genome is 10140 nucleotides in length excluding the poly(A) tail and contains a single large open reading frame encoding a 328-kilo Dalton (kDA) p ...
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List Of Diseases Of The Honey Bee
Diseases of the honey bee or abnormal hive conditions include: Pests and parasites ''Varroa'' mites ''Varroa destructor'' and ''V. jacobsoni'' are parasitic mites that feed on the fat bodies of adult, pupal and larval bees. When the hive is very heavily infested, ''Varroa'' mites can be seen with the naked eye as a small red or brown spot on the bee's thorax. ''Varroa'' mites are carriers for many viruses that are damaging to bees. For example, bees infected during their development will often have visibly deformed wings. ''Varroa'' mites have led to the virtual elimination of feral bee colonies in many areas, and are a major problem for kept bees in apiaries. Some feral populations are now recovering—it appears they have been naturally selected for ''Varroa'' resistance. ''Varroa'' mites were first discovered in Southeast Asia in about 1904, but are now present on all continents except Australia. They were discovered in the United States in 1987, in New Zealand in ...
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RT-PCR
Reverse transcription polymerase chain reaction (RT-PCR) is a laboratory technique combining reverse transcription of RNA into DNA (in this context called complementary DNA or cDNA) and amplification of specific DNA targets using polymerase chain reaction (PCR). It is primarily used to measure the amount of a specific RNA. This is achieved by monitoring the amplification reaction using fluorescence, a technique called real-time PCR or quantitative PCR (qPCR). Combined RT-PCR and qPCR are routinely used for analysis of gene expression and quantification of viral RNA in research and clinical settings. The close association between RT-PCR and qPCR has led to metonymic use of the term qPCR to mean RT-PCR. Such use may be confusing, as RT-PCR can be used without qPCR, for example to enable molecular cloning, sequencing or simple detection of RNA. Conversely, qPCR may be used without RT-PCR, for example to quantify the copy number of a specific piece of DNA. Nomenclature The combine ...
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DNA Methylation
DNA methylation is a biological process by which methyl groups are added to the DNA molecule. Methylation can change the activity of a DNA segment without changing the sequence. When located in a gene promoter, DNA methylation typically acts to repress gene transcription. In mammals, DNA methylation is essential for normal development and is associated with a number of key processes including genomic imprinting, X-chromosome inactivation, repression of transposable elements, aging, and carcinogenesis. As of 2016, two nucleobases have been found on which natural, enzymatic DNA methylation takes place: adenine and cytosine. The modified bases are N6-methyladenineD. B. Dunn, J. D. Smith: ''The occurrence of 6-methylaminopurine in deoxyribonucleic acids.'' In: ''Biochem J.'' 68(4), Apr 1958, S. 627–636. PMID 13522672. ., 5-methylcytosineB. F. Vanyushin, S. G. Tkacheva, A. N. Belozersky: ''Rare bases in animal DNA.'' In: ''Nature.'' 225, 1970, S. 948–949. PMID 4391887. and N4- ...
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Transversion
Transversion, in molecular biology, refers to a point mutation in DNA in which a single (two ring) purine ( A or G) is changed for a (one ring) pyrimidine ( T or C), or vice versa. A transversion can be spontaneous, or it can be caused by ionizing radiation or alkylating agents. It can only be reversed by a spontaneous reversion. Ratio of transitions to transversions Although there are two possible transversions but only one possible transition per base, transition mutations are more likely than transversions because substituting a single ring structure for another single ring structure is more likely than substituting a double ring for a single ring. Also, transitions are less likely to result in amino acid substitutions (due to wobble base pair), and are therefore more likely to persist as "silent substitutions" in populations as single nucleotide polymorphisms (SNPs). A transversion usually has a more pronounced effect than a transition because the third nucleotide codo ...
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Reverse Transcription Polymerase Chain Reaction
Reverse transcription polymerase chain reaction (RT-PCR) is a laboratory technique combining reverse transcription of RNA into DNA (in this context called complementary DNA or cDNA) and amplification of specific DNA targets using polymerase chain reaction (PCR). It is primarily used to measure the amount of a specific RNA. This is achieved by monitoring the amplification reaction using fluorescence, a technique called real-time PCR or quantitative PCR (qPCR). Combined RT-PCR and qPCR are routinely used for analysis of gene expression and quantification of viral RNA in research and clinical settings. The close association between RT-PCR and qPCR has led to metonymic use of the term qPCR to mean RT-PCR. Such use may be confusing, as RT-PCR can be used without qPCR, for example to enable molecular cloning, sequencing or simple detection of RNA. Conversely, qPCR may be used without RT-PCR, for example to quantify the copy number of a specific piece of DNA. Nomenclature The combine ...
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Sanger Sequencing
Sanger sequencing is a method of DNA sequencing that involves electrophoresis and is based on the random incorporation of chain-terminating dideoxynucleotides by DNA polymerase during in vitro DNA replication. After first being developed by Frederick Sanger and colleagues in 1977, it became the most widely used sequencing method for approximately 40 years. It was first commercialized by Applied Biosystems in 1986. More recently, higher volume Sanger sequencing has been replaced by next generation sequencing methods, especially for large-scale, automated genome analyses. However, the Sanger method remains in wide use for smaller-scale projects and for validation of deep sequencing results. It still has the advantage over short-read sequencing technologies (like Illumina) in that it can produce DNA sequence reads of > 500 nucleotides and maintains a very low error rate with accuracies around 99.99%. Sanger sequencing is still actively being used in efforts for public health initiative ...
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Dicistroviridae
''Dicistroviridae'' is a family of viruses in the order ''Picornavirales''. Invertebrates, including aphids, leafhoppers, flies, bees, ants, and silkworms, serve as natural hosts. There are 15 species in this family, assigned to three genera. Diseases associated with this family include: DCV: increased reproductive potential. extremely pathogenic when injected with high associated mortality. CrPV: paralysis and death. Taxonomy Although many dicistroviruses were initially placed in the ''Picornaviridae'', they have since been reclassified into their own family. The name (Dicistro) is derived from the characteristic dicistronic arrangement of the genome. This family is a member of the Order ''Picornavirales'' (along with the families ''Iflaviridae'', ''Picornaviridae'', and ''Secoviridae'' and '' Marnaviridae''). Within this order, the gene order is the gene order of the nonstructural proteins Hel(helicase)-Pro(protease)-RdRp(polymerase). The ''Dicistroviridae'' can be disting ...
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