Jaro–Winkler Distance
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Jaro–Winkler Distance
In computer science and statistics, the Jaro–Winkler distance is a string metric measuring an edit distance between two sequences. It is a variant proposed in 1990 by William E. Winkler of the Jaro distance metric (1989, Matthew A. Jaro). The Jaro–Winkler distance uses a prefix scale p which gives more favourable ratings to strings that match from the beginning for a set prefix length \ell. The higher the Jaro–Winkler distance for two strings is, the less similar the strings are. The score is normalized such that 0 means an exact match and 1 means there is no similarity. The original paper actually defined the metric in terms of similarity, so the distance is defined as the inversion of that value (distance = 1 − similarity). Although often referred to as a ''distance metric'', the Jaro–Winkler distance is not a metric in the mathematical sense of that term because it does not obey the triangle inequality. Definition Jaro similarity The Jaro similarity sim_j of ...
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Computer Science
Computer science is the study of computation, automation, and information. Computer science spans theoretical disciplines (such as algorithms, theory of computation, information theory, and automation) to Applied science, practical disciplines (including the design and implementation of Computer architecture, hardware and Computer programming, software). Computer science is generally considered an area of research, academic research and distinct from computer programming. Algorithms and data structures are central to computer science. The theory of computation concerns abstract models of computation and general classes of computational problem, problems that can be solved using them. The fields of cryptography and computer security involve studying the means for secure communication and for preventing Vulnerability (computing), security vulnerabilities. Computer graphics (computer science), Computer graphics and computational geometry address the generation of images. Progr ...
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Damerau–Levenshtein Distance
In information theory and computer science, the Damerau–Levenshtein distance (named after Frederick J. Damerau and Vladimir I. Levenshtein.) is a string metric for measuring the edit distance between two sequences. Informally, the Damerau–Levenshtein distance between two words is the minimum number of operations (consisting of insertions, deletions or substitutions of a single character, or transposition of two adjacent characters) required to change one word into the other. The Damerau–Levenshtein distance differs from the classical Levenshtein distance by including transpositions among its allowable operations in addition to the three classical single-character edit operations (insertions, deletions and substitutions). In his seminal paper, Damerau stated that in an investigation of spelling errors for an information-retrieval system, more than 80% were a result of a single error of one of the four types. Damerau's paper considered only misspellings that could be correct ...
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Census
A census is the procedure of systematically acquiring, recording and calculating information about the members of a given population. This term is used mostly in connection with national population and housing censuses; other common censuses include censuses of agriculture, traditional culture, business, supplies, and traffic censuses. The United Nations (UN) defines the essential features of population and housing censuses as "individual enumeration, universality within a defined territory, simultaneity and defined periodicity", and recommends that population censuses be taken at least every ten years. UN recommendations also cover census topics to be collected, official definitions, classifications and other useful information to co-ordinate international practices. The UN's Food and Agriculture Organization (FAO), in turn, defines the census of agriculture as "a statistical operation for collecting, processing and disseminating data on the structure of agriculture, covering th ...
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Record Linkage
Record linkage (also known as data matching, data linkage, entity resolution, and many other terms) is the task of finding records in a data set that refer to the same entity across different data sources (e.g., data files, books, websites, and databases). Record linkage is necessary when joining different data sets based on entities that may or may not share a common identifier (e.g., database key, URI, National identification number), which may be due to differences in record shape, storage location, or curator style or preference. A data set that has undergone RL-oriented reconciliation may be referred to as being ''cross-linked''. Naming conventions "Record linkage" is the term used by statisticians, epidemiologists, and historians, among others, to describe the process of joining records from one data source with another that describe the same entity. However, many other terms are used for this process. Unfortunately, this profusion of terminology has led to few cross-refe ...
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Smith–Waterman Algorithm
The Smith–Waterman algorithm performs local sequence alignment; that is, for determining similar regions between two strings of nucleic acid sequences or protein sequences. Instead of looking at the entire sequence, the Smith–Waterman algorithm compares segments of all possible lengths and optimizes the similarity measure. The algorithm was first proposed by Temple F. Smith and Michael S. Waterman in 1981. Like the Needleman–Wunsch algorithm, of which it is a variation, Smith–Waterman is a dynamic programming algorithm. As such, it has the desirable property that it is guaranteed to find the optimal local alignment with respect to the scoring system being used (which includes the substitution matrix and the gap-scoring scheme). The main difference to the Needleman–Wunsch algorithm is that negative scoring matrix cells are set to zero, which renders the (thus positively scoring) local alignments visible. Traceback procedure starts at the highest scoring matrix cell and ...
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Sequence Alignment
In bioinformatics, a sequence alignment is a way of arranging the sequences of DNA, RNA, or protein to identify regions of similarity that may be a consequence of functional, structural, or evolutionary relationships between the sequences. Aligned sequences of nucleotide or amino acid residues are typically represented as rows within a matrix. Gaps are inserted between the residues so that identical or similar characters are aligned in successive columns. Sequence alignments are also used for non-biological sequences, such as calculating the distance cost between strings in a natural language or in financial data. Interpretation If two sequences in an alignment share a common ancestor, mismatches can be interpreted as point mutations and gaps as indels (that is, insertion or deletion mutations) introduced in one or both lineages in the time since they diverged from one another. In sequence alignments of proteins, the degree of similarity between amino acids occupying a parti ...
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Edit Distance
In computational linguistics and computer science, edit distance is a string metric, i.e. a way of quantifying how dissimilar two strings (e.g., words) are to one another, that is measured by counting the minimum number of operations required to transform one string into the other. Edit distances find applications in natural language processing, where automatic spelling correction can determine candidate corrections for a misspelled word by selecting words from a dictionary that have a low distance to the word in question. In bioinformatics, it can be used to quantify the similarity of DNA sequences, which can be viewed as strings of the letters A, C, G and T. Different definitions of an edit distance use different sets of string operations. Levenshtein distance operations are the removal, insertion, or substitution of a character in the string. Being the most common metric, the term ''Levenshtein distance'' is often used interchangeably with ''edit distance''. Types of edit dis ...
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Hamming Distance
In information theory, the Hamming distance between two strings of equal length is the number of positions at which the corresponding symbols are different. In other words, it measures the minimum number of ''substitutions'' required to change one string into the other, or the minimum number of ''errors'' that could have transformed one string into the other. In a more general context, the Hamming distance is one of several string metrics for measuring the edit distance between two sequences. It is named after the American mathematician Richard Hamming. A major application is in coding theory, more specifically to block codes, in which the equal-length strings are vectors over a finite field. Definition The Hamming distance between two equal-length strings of symbols is the number of positions at which the corresponding symbols are different. Examples The symbols may be letters, bits, or decimal digits, among other possibilities. For example, the Hamming distance between: ...
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Longest Common Subsequence Problem
The longest common subsequence (LCS) problem is the problem of finding the longest subsequence common to all sequences in a set of sequences (often just two sequences). It differs from the longest common substring problem: unlike substrings, subsequences are not required to occupy consecutive positions within the original sequences. The longest common subsequence problem is a classic computer science problem, the basis of data comparison programs such as the diff utility, and has applications in computational linguistics and bioinformatics. It is also widely used by revision control systems such as Git for reconciling multiple changes made to a revision-controlled collection of files. For example, consider the sequences (ABCD) and (ACBAD). They have 5 length-2 common subsequences: (AB), (AC), (AD), (BD), and (CD); 2 length-3 common subsequences: (ABD) and (ACD); and no longer common subsequences. So (ABD) and (ACD) are their longest common subsequences. Complexity For the ...
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Transposition (mathematics)
In mathematics, and in particular in group theory, a cyclic permutation (or cycle) is a permutation of the elements of some set ''X'' which maps the elements of some subset ''S'' of ''X'' to each other in a cyclic fashion, while fixing (that is, mapping to themselves) all other elements of ''X''. If ''S'' has ''k'' elements, the cycle is called a ''k''-cycle. Cycles are often denoted by the list of their elements enclosed with parentheses, in the order to which they are permuted. For example, given ''X'' = , the permutation (1, 3, 2, 4) that sends 1 to 3, 3 to 2, 2 to 4 and 4 to 1 (so ''S'' = ''X'') is a 4-cycle, and the permutation (1, 3, 2) that sends 1 to 3, 3 to 2, 2 to 1 and 4 to 4 (so ''S'' = and 4 is a fixed element) is a 3-cycle. On the other hand, the permutation that sends 1 to 3, 3 to 1, 2 to 4 and 4 to 2 is not a cyclic permutation because it separately permutes the pairs and . The set ''S'' is called the orbit of the cycle. Every permutation on finitely many eleme ...
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Levenshtein Distance
In information theory, linguistics, and computer science, the Levenshtein distance is a string metric for measuring the difference between two sequences. Informally, the Levenshtein distance between two words is the minimum number of single-character edits (insertions, deletions or substitutions) required to change one word into the other. It is named after the Soviet mathematician Vladimir Levenshtein, who considered this distance in 1965. Levenshtein distance may also be referred to as ''edit distance'', although that term may also denote a larger family of distance metrics known collectively as edit distance. It is closely related to pairwise string alignments. Definition The Levenshtein distance between two strings a, b (of length , a, and , b, respectively) is given by \operatorname(a, b) where : \operatorname(a, b) = \begin , a, & \text , b, = 0, \\ , b, & \text , a, = 0, \\ \operatorname\big(\operatorname(a),\operatorname(b)\big) & \text a = b \\ 1 + \min ...
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Statistics
Statistics (from German language, German: ''wikt:Statistik#German, Statistik'', "description of a State (polity), state, a country") is the discipline that concerns the collection, organization, analysis, interpretation, and presentation of data. In applying statistics to a scientific, industrial, or social problem, it is conventional to begin with a statistical population or a statistical model to be studied. Populations can be diverse groups of people or objects such as "all people living in a country" or "every atom composing a crystal". Statistics deals with every aspect of data, including the planning of data collection in terms of the design of statistical survey, surveys and experimental design, experiments.Dodge, Y. (2006) ''The Oxford Dictionary of Statistical Terms'', Oxford University Press. When census data cannot be collected, statisticians collect data by developing specific experiment designs and survey sample (statistics), samples. Representative sampling as ...
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