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Junction Tree Algorithm
The junction tree algorithm (also known as 'Clique Tree') is a method used in machine learning to extract marginalization in general graphs. In essence, it entails performing belief propagation on a modified graph called a junction tree. The graph is called a tree because it branches into different sections of data; nodes of variables are the branches. The basic premise is to eliminate cycles by clustering them into single nodes. Multiple extensive classes of queries can be compiled at the same time into larger structures of data. There are different algorithms to meet specific needs and for what needs to be calculated. Inference algorithms gather new developments in the data and calculate it based on the new information provided. Junction tree algorithm Hugin algorithm * If the graph is directed then moralize it to make it un-directed. *Introduce the evidence. *Triangulate the graph to make it chordal. *Construct a junction tree from the triangulated graph (we will call t ...
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Kruskal's Algorithm
Kruskal's algorithm finds a minimum spanning forest of an undirected edge-weighted graph. If the graph is connected, it finds a minimum spanning tree. (A minimum spanning tree of a connected graph is a subset of the edges that forms a tree that includes every vertex, where the sum of the weights of all the edges in the tree is minimized. For a disconnected graph, a minimum spanning forest is composed of a minimum spanning tree for each connected component.) It is a greedy algorithm in graph theory as in each step it adds the next lowest-weight edge that will not form a cycle to the minimum spanning forest. This algorithm first appeared in '' Proceedings of the American Mathematical Society'', pp. 48–50 in 1956, and was written by Joseph Kruskal. It was rediscovered by . Other algorithms for this problem include Prim's algorithm, the reverse-delete algorithm, and Borůvka's algorithm. Algorithm * create a forest ''F'' (a set of trees), where each vertex in the ...
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Clique Graph
In graph theory, a clique graph of an undirected graph is another graph that represents the structure of cliques in . Clique graphs were discussed at least as early as 1968, and a characterization of clique graphs was given in 1971. Formal definition A clique of a graph ''G'' is a set ''X'' of vertices of ''G'' with the property that every pair of distinct vertices in ''X'' are adjacent in ''G''. A maximal clique of a graph ''G'' is a clique ''X'' of vertices of ''G'', such that there is no clique ''Y'' of vertices of ''G'' that contains all of ''X'' and at least one other vertex. Given a graph ''G'', its clique graph ''K''(''G'') is a graph such that * every vertex of ''K''(''G'') represents a maximal clique of ''G''; and * two vertices of ''K''(''G'') are adjacent when the underlying cliques in ''G'' share at least one vertex in common. The clique graph ''K''(''G'') can also be characterized as the intersection graph of the maximal cliques of ''G''. Characterization A gr ...
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Chordal Graph
In the mathematical area of graph theory, a chordal graph is one in which all cycles of four or more vertices have a ''chord'', which is an edge that is not part of the cycle but connects two vertices of the cycle. Equivalently, every induced cycle in the graph should have exactly three vertices. The chordal graphs may also be characterized as the graphs that have perfect elimination orderings, as the graphs in which each minimal separator is a clique, and as the intersection graphs of subtrees of a tree. They are sometimes also called rigid circuit graphs. or triangulated graphs.. Chordal graphs are a subset of the perfect graphs. They may be recognized in linear time, and several problems that are hard on other classes of graphs such as graph coloring may be solved in polynomial time when the input is chordal. The treewidth of an arbitrary graph may be characterized by the size of the cliques in the chordal graphs that contain it. Perfect elimination and efficient recogni ...
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Variable Elimination
Variable elimination (VE) is a simple and general exact inference algorithm in probabilistic graphical models, such as Bayesian networks and Markov random fields.Zhang, N.L., Poole, D.:A Simple Approach to Bayesian Network Computations.In: 7th Canadian Conference on Artificial Intelligence,pp. 171--178. Springer, New York (1994) It can be used for inference of maximum a posteriori (MAP) state or estimation of conditional or marginal distributions over a subset of variables. The algorithm has exponential time complexity, but could be efficient in practice for low-treewidth graphs, if the proper elimination order is used. Factors Enabling a key reduction in algorithmic complexity, a factor f, also known as a potential, of variables V is a relation between each instantiation of v of variables f to a non-negative number, commonly denoted as f(x). A factor does not necessarily have a set interpretation. One may perform operations on factors of different representations such as a proba ...
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Variable Elimination
Variable elimination (VE) is a simple and general exact inference algorithm in probabilistic graphical models, such as Bayesian networks and Markov random fields.Zhang, N.L., Poole, D.:A Simple Approach to Bayesian Network Computations.In: 7th Canadian Conference on Artificial Intelligence,pp. 171--178. Springer, New York (1994) It can be used for inference of maximum a posteriori (MAP) state or estimation of conditional or marginal distributions over a subset of variables. The algorithm has exponential time complexity, but could be efficient in practice for low-treewidth graphs, if the proper elimination order is used. Factors Enabling a key reduction in algorithmic complexity, a factor f, also known as a potential, of variables V is a relation between each instantiation of v of variables f to a non-negative number, commonly denoted as f(x). A factor does not necessarily have a set interpretation. One may perform operations on factors of different representations such as a proba ...
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Triangulation (geometry)
In geometry, a triangulation is a subdivision of a planar object into triangles, and by extension the subdivision of a higher-dimension geometric object into simplices. Triangulations of a three-dimensional volume would involve subdividing it into tetrahedra packed together. In most instances, the triangles of a triangulation are required to meet edge-to-edge and vertex-to-vertex. Types Different types of triangulations may be defined, depending both on what geometric object is to be subdivided and on how the subdivision is determined. * A triangulation T of \mathbb^d is a subdivision of \mathbb^d into d-dimensional simplices such that any two simplices in T intersect in a common face (a simplex of any lower dimension) or not at all, and any bounded set in \mathbb^d intersects only finitely many simplices in T. That is, it is a locally finite simplicial complex that covers the entire space. * A point-set triangulation, i.e., a triangulation of a discrete set of points \mathcal ...
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Random Variable
A random variable (also called random quantity, aleatory variable, or stochastic variable) is a mathematical formalization of a quantity or object which depends on random events. It is a mapping or a function from possible outcomes (e.g., the possible upper sides of a flipped coin such as heads H and tails T) in a sample space (e.g., the set \) to a measurable space, often the real numbers (e.g., \ in which 1 corresponding to H and -1 corresponding to T). Informally, randomness typically represents some fundamental element of chance, such as in the roll of a dice; it may also represent uncertainty, such as measurement error. However, the interpretation of probability is philosophically complicated, and even in specific cases is not always straightforward. The purely mathematical analysis of random variables is independent of such interpretational difficulties, and can be based upon a rigorous axiomatic setup. In the formal mathematical language of measure theory, a random ...
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Undirected
In discrete mathematics, and more specifically in graph theory, a graph is a structure amounting to a set of objects in which some pairs of the objects are in some sense "related". The objects correspond to mathematical abstractions called '' vertices'' (also called ''nodes'' or ''points'') and each of the related pairs of vertices is called an ''edge'' (also called ''link'' or ''line''). Typically, a graph is depicted in diagrammatic form as a set of dots or circles for the vertices, joined by lines or curves for the edges. Graphs are one of the objects of study in discrete mathematics. The edges may be directed or undirected. For example, if the vertices represent people at a party, and there is an edge between two people if they shake hands, then this graph is undirected because any person ''A'' can shake hands with a person ''B'' only if ''B'' also shakes hands with ''A''. In contrast, if an edge from a person ''A'' to a person ''B'' means that ''A'' owes money to ''B'', th ...
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Bayesian Networks
A Bayesian network (also known as a Bayes network, Bayes net, belief network, or decision network) is a probabilistic graphical model that represents a set of variables and their conditional dependencies via a directed acyclic graph (DAG). Bayesian networks are ideal for taking an event that occurred and predicting the likelihood that any one of several possible known causes was the contributing factor. For example, a Bayesian network could represent the probabilistic relationships between diseases and symptoms. Given symptoms, the network can be used to compute the probabilities of the presence of various diseases. Efficient algorithms can perform inference and learning in Bayesian networks. Bayesian networks that model sequences of variables (''e.g.'' speech signals or protein sequences) are called dynamic Bayesian networks. Generalizations of Bayesian networks that can represent and solve decision problems under uncertainty are called influence diagrams. Graphical m ...
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