Halocarpus Bidwillii
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Halocarpus Bidwillii
''Halocarpus bidwillii'', commonly known as the mountain pine or bog pine, is a species of conifer in the family Podocarpaceae. It is endemic to New Zealand. It is an evergreen shrub favouring both bogs and dry stony ground, seldom growing to more than high. The leaves are scale-like on adult plants, long, arranged spirally on the shoots; young seedlings and occasional shoots on older plants have soft strap-like leaves and broad. The seed cones are highly modified, berry-like, with a white aril surrounding the single long seed. Description ''H. bidiwillii'' grows as a shrub. It grows up to tall and has a short trunk that Kirk noted "rarely exceeds" 1 foot in diameter, and more commonly has a thickness between at breast height. Its bark is red to brown and trunks have multiple branches, though will occasionally have just one. In some rare cases, as the horizontal branches grow, their roots will form a "bush" around the parent shrub. This creates a vast mini-forest that ...
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New Zealand Threat Classification System
The New Zealand Threat Classification System is used by the Department of Conservation to assess conservation priorities of species in New Zealand. The system was developed because the IUCN Red List, a similar conservation status system, had some shortcomings for the unique requirements of conservation ranking in New Zealand. plants, animals, and fungi are evaluated, though the lattermost has yet to be published. Algae were assessed in 2005 but not reassessed since. Other protists have not been evaluated. Categories Species that are ranked are assigned categories: ;Threatened This category has three major divisions: ::*Nationally Critical - equivalent to the IUCN category of Critically endangered ::*Nationally Endangered - equivalent to the IUCN category of Endangered ::*Nationally Vulnerable - equivalent to the IUCN category of Vulnerable ;At Risk This has four categories: ::*Declining ::*Recovering ::*Relict ::*Naturally Uncommon ;Other categories ;;Introduced and Natur ...
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New Zealand Plant Conservation Network
The New Zealand Plant Conservation Network (NZPCN) is a non-governmental organisation devoted to the protection and restoration of New Zealand's indigenous plant life, including vascular plants, mosses, liverworts, hornworts and lichens. Description The Network was founded in 2003 and has a worldwide membership. The Network was established as a mechanism to aid the implementation of the New Zealand Biodiversity Strategy and the Global strategy for plant conservation. Members include botanists, non-governmental organisations, research institutes such as universities, private businesses, botanic gardens, schools, central and local government employees, members of the public, ecological restoration programmes, and private landowners. ;Aims The Network has a vision that "no indigenous species of plant will become extinct nor be placed at risk of extinction as a result of human action or indifference, and that the rich, diverse and unique plant life of New Zealand will be recognise ...
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Maturase K
Maturase K (matK) is a plant plastidial gene. The protein it encodes is an organelle intron maturase, a protein that splices Group II introns. It is essential for ''in vivo'' splicing of Group II introns. Amongst other maturases, this protein retains only a well conserved domain X and remnants of a reverse transcriptase domain. Universal matK primers can be used for DNA barcoding DNA barcoding is a method of species identification using a short section of DNA from a specific gene or genes. The premise of DNA barcoding is that by comparison with a reference library of such DNA sections (also called "sequences"), an indiv ... of angiosperms. See also * LtrA, an open reading frame found in the ''Lactococcus lactis'' group II introns LtrB. It is an intron-encoded protein, with three subdomains, one of which is a reverse-transcriptase/maturase. References Plant genes {{gene-stub ...
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De Novo Sequencing
In mass spectrometry, de novo peptide sequencing is the method in which a peptide amino acid sequence is determined from tandem mass spectrometry. Knowing the amino acid sequence of peptides from a protein digest is essential for studying the biological function of the protein. In the old days, this was accomplished by the Edman degradation procedure. Today, analysis by a tandem mass spectrometer is a more common method to solve the sequencing of peptides. Generally, there are two approaches: database search and de novo sequencing. Database search is a simple version as the mass spectra data of the unknown peptide is submitted and run to find a match with a known peptide sequence, the peptide with the highest matching score will be selected. This approach fails to recognize novel peptides since it can only match to existing sequences in the database. De novo sequencing is an assignment of fragment ions from a mass spectrum. Different algorithms are used for interpretation and most in ...
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GenBank
The GenBank sequence database is an open access, annotated collection of all publicly available nucleotide sequences and their protein translations. It is produced and maintained by the National Center for Biotechnology Information (NCBI; a part of the National Institutes of Health in the United States) as part of the International Nucleotide Sequence Database Collaboration (INSDC). GenBank and its collaborators receive sequences produced in laboratories throughout the world from more than 500,000 formally described species. The database started in 1982 by Walter Goad and Los Alamos National Laboratory. GenBank has become an important database for research in biological fields and has grown in recent years at an exponential rate by doubling roughly every 18 months. Release 250.0, published in June 2022, contained over 17 trillion nucleotide bases in more than 2,45 billion sequences. GenBank is built by direct submissions from individual laboratories, as well as from bulk submis ...
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Smithsonian Contributions To Botany
The Smithsonian Contributions and Studies Series is a collection of serial periodical publications produced by the Smithsonian Institution, detailing advances in various scientific and societal fields to which the Smithsonian Institution has made contributions. History The Smithsonian Institution began publishing consolidated compilations of quarto-sized papers in 1848, under the name ''Smithsonian Contributions to Knowledge''.History of Scholarly Publishing
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In 1862 -sized papers called ''Smithsonian Miscellaneou ...
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Clade
A clade (), also known as a monophyletic group or natural group, is a group of organisms that are monophyletic – that is, composed of a common ancestor and all its lineal descendants – on a phylogenetic tree. Rather than the English term, the equivalent Latin term ''cladus'' (plural ''cladi'') is often used in taxonomical literature. The common ancestor may be an individual, a population, or a species (extinct or extant). Clades are nested, one in another, as each branch in turn splits into smaller branches. These splits reflect evolutionary history as populations diverged and evolved independently. Clades are termed monophyletic (Greek: "one clan") groups. Over the last few decades, the cladistic approach has revolutionized biological classification and revealed surprising evolutionary relationships among organisms. Increasingly, taxonomists try to avoid naming taxa that are not clades; that is, taxa that are not monophyletic. Some of the relationships between organisms ...
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Monophyly
In cladistics for a group of organisms, monophyly is the condition of being a clade—that is, a group of taxa composed only of a common ancestor (or more precisely an ancestral population) and all of its lineal descendants. Monophyletic groups are typically characterised by shared derived characteristics ( synapomorphies), which distinguish organisms in the clade from other organisms. An equivalent term is holophyly. The word "mono-phyly" means "one-tribe" in Greek. Monophyly is contrasted with paraphyly and polyphyly as shown in the second diagram. A ''paraphyletic group'' consists of all of the descendants of a common ancestor minus one or more monophyletic groups. A '' polyphyletic group'' is characterized by convergent features or habits of scientific interest (for example, night-active primates, fruit trees, aquatic insects). The features by which a polyphyletic group is differentiated from others are not inherited from a common ancestor. These definitions have taken ...
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DNA Sequencing
DNA sequencing is the process of determining the nucleic acid sequence – the order of nucleotides in DNA. It includes any method or technology that is used to determine the order of the four bases: adenine, guanine, cytosine, and thymine. The advent of rapid DNA sequencing methods has greatly accelerated biological and medical research and discovery. Knowledge of DNA sequences has become indispensable for basic biological research, DNA Genographic Projects and in numerous applied fields such as medical diagnosis, biotechnology, forensic biology, virology and biological systematics. Comparing healthy and mutated DNA sequences can diagnose different diseases including various cancers, characterize antibody repertoire, and can be used to guide patient treatment. Having a quick way to sequence DNA allows for faster and more individualized medical care to be administered, and for more organisms to be identified and cataloged. The rapid speed of sequencing attained with modern D ...
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John Carne Bidwill
John Carne Bidwill (5 February 1815 – 16 March 1853) was an English botanist who documented plant life in New Zealand and Australia. He is attributed with the discovery of several Australian plant species. Life in England Bidwill was born at St. Thomas, Exeter, England, the eldest son of Joseph Green Bidwill, a merchant of Exeter and Charlotte, ''née'' Carne. He was educated for a commercial life but developed an interest in science, and botany in particular. He sailed to Canada in April 1832 at 17 years of age, returning in November 1834. Migration In September 1838 John Bidwill arrived in Sydney, Australia, and while waiting for the survey of land that he had been allotted, he joined a commercial firm. He was sent in a schooner to New Zealand, arriving at the Bay of Islands on 5 February 1839. Over the next two months he took a journey into the interior of the North Island collecting botanical and other scientific specimens. He sent the plants he collected t ...
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Specific Epithet
In taxonomy, binomial nomenclature ("two-term naming system"), also called nomenclature ("two-name naming system") or binary nomenclature, is a formal system of naming species of living things by giving each a name composed of two parts, both of which use Latin grammatical forms, although they can be based on words from other languages. Such a name is called a binomial name (which may be shortened to just "binomial"), a binomen, name or a scientific name; more informally it is also historically called a Latin name. The first part of the name – the '' generic name'' – identifies the genus to which the species belongs, whereas the second part – the specific name or specific epithet – distinguishes the species within the genus. For example, modern humans belong to the genus ''Homo'' and within this genus to the species ''Homo sapiens''. ''Tyrannosaurus rex'' is likely the most widely known binomial. The ''formal'' introduction of this system of naming species is credit ...
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CSIRO
The Commonwealth Scientific and Industrial Research Organisation (CSIRO) is an Australian Government The Australian Government, also known as the Commonwealth Government, is the national government of Australia, a federal parliamentary constitutional monarchy. Like other Westminster-style systems of government, the Australian Government ... agency responsible for scientific research. CSIRO works with leading organisations around the world. From its headquarters in Canberra, CSIRO maintains more than 50 sites across Australia and in France, Chile and the United States, employing about 5,500 people. Federally funded scientific research began in Australia years ago. The Advisory Council of Science and Industry was established in 1916 but was hampered by insufficient available finance. In 1926 the research effort was reinvigorated by establishment of the Council for Scientific and Industrial Research (CSIR), which strengthened national science leadership and increased ...
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