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Glomalin
Glomalin is a glycoprotein produced abundantly on hyphae and spores of arbuscular mycorrhizal (AM) fungi in soil and in roots. Glomalin was discovered in 1996 by Sara F. Wright, a scientist at the USDA Agricultural Research Service. The name comes from Glomerales, an order of fungi. Most AM fungi are of the division Glomeromycota. An elusive substance, it is mostly known from its glue-like effect on soil and has not yet been isolated. Definition and controversy The specific protein glomalin has not yet been isolated and described. What has been described is an extraction process involving heat and citrate, producing mixture containing a substance that is reactive to a monoclonal antibody Mab32B11 raised against crushed AM fungi spores. The substance is then provisionally named "glomalin". As many laboratories do not have the equipment to perform an antibody-based isolation (ELISA), a crude mixture called glomalin-related soil proteins (GRSP) is used to refer to the extract por ...
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Arbuscular Mycorrhiza
An arbuscular mycorrhiza (AM) (plural ''mycorrhizae'', a.k.a. ''endomycorrhiza'') is a type of mycorrhiza in which the symbiont fungus (''AM fungi'', or AMF) penetrates the cortical cells of the roots of a vascular plant forming arbuscules. (Not to be confused with ectomycorrhiza or ericoid mycorrhiza.) Arbuscular mycorrhizae are characterized by the formation of unique structures, arbuscules and vesicles, by Glomeromycota and Mucoromycota, sister clades of the more well-known and diverse dikaryan fungi (all three are together called "symbiomycota"). AM fungi help plants to capture nutrients such as phosphorus, sulfur, nitrogen and micronutrients from the soil. It is believed that the development of the arbuscular mycorrhizal symbiosis played a crucial role in the initial colonisation of land by plants and in the evolution of the vascular plants. It has been said that it is quicker to list the plants that do not form endomycorrhizae than those that do. This symbiosis is a ...
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Mycorrhizal Fungi And Soil Carbon Storage
Soil carbon storage is an important function of terrestrial ecosystems. Soil contains more carbon than plants and the atmosphere combined. Understanding what maintains the soil carbon pool is important to understand the current distribution of carbon on Earth, and how it will respond to environmental change. While much research has been done on how plants, free-living microbial decomposers, and soil minerals affect this pool of carbon, it is recently coming to light that mycorrhizal fungi—symbiotic fungi that associate with roots of almost all living plants—may play an important role in maintaining this pool as well. Measurements of plant carbon allocation to mycorrhizal fungi have been estimated to be 5 to 20% of total plant carbon uptake, and in some ecosystems the biomass of mycorrhizal fungi can be comparable to the biomass of fine roots. Recent research has shown that mycorrhizal fungi hold 50 to 70 percent of the total carbon stored in leaf litter and soil on forested isla ...
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Mycorrhizal Fungi
  A mycorrhiza (from Greek μύκης ', "fungus", and ῥίζα ', "root"; pl. mycorrhizae, mycorrhiza or mycorrhizas) is a symbiotic association between a fungus and a plant. The term mycorrhiza refers to the role of the fungus in the plant's rhizosphere, its root system. Mycorrhizae play important roles in plant nutrition, soil biology, and soil chemistry. In a mycorrhizal association, the fungus colonizes the host plant's root tissues, either intracellularly as in arbuscular mycorrhizal fungi (AMF or AM), or extracellularly as in ectomycorrhizal fungi. The association is sometimes mutualistic. In particular species or in particular circumstances, mycorrhizae may have a parasitic association with host plants. Definition A mycorrhiza is a symbiotic association between a green plant and a fungus. The plant makes organic molecules such as sugars by photosynthesis and supplies them to the fungus, and the fungus supplies to the plant water and mineral nutrients, such as ph ...
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Glycoprotein
Glycoproteins are proteins which contain oligosaccharide chains covalently attached to amino acid side-chains. The carbohydrate is attached to the protein in a cotranslational or posttranslational modification. This process is known as glycosylation. Secreted extracellular proteins are often glycosylated. In proteins that have segments extending extracellularly, the extracellular segments are also often glycosylated. Glycoproteins are also often important integral membrane proteins, where they play a role in cell–cell interactions. It is important to distinguish endoplasmic reticulum-based glycosylation of the secretory system from reversible cytosolic-nuclear glycosylation. Glycoproteins of the cytosol and nucleus can be modified through the reversible addition of a single GlcNAc residue that is considered reciprocal to phosphorylation and the functions of these are likely to be an additional regulatory mechanism that controls phosphorylation-based signalling. In co ...
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Physiology
Physiology (; ) is the scientific study of functions and mechanisms in a living system. As a sub-discipline of biology, physiology focuses on how organisms, organ systems, individual organs, cells, and biomolecules carry out the chemical and physical functions in a living system. According to the classes of organisms, the field can be divided into medical physiology, animal physiology, plant physiology, cell physiology, and comparative physiology. Central to physiological functioning are biophysical and biochemical processes, homeostatic control mechanisms, and communication between cells. ''Physiological state'' is the condition of normal function. In contrast, '' pathological state'' refers to abnormal conditions, including human diseases. The Nobel Prize in Physiology or Medicine is awarded by the Royal Swedish Academy of Sciences for exceptional scientific achievements in physiology related to the field of medicine. Foundations Cells Although there are ...
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Soil Structure
Soil structure describes the arrangement or the way of soil in the solid parts of the soil and of the pore space located between them. It is determined by how individual soil granules clump, bind together, and aggregate, resulting in the arrangement of soil pores between them. Soil has a major influence on water and air movement, biological activity, root growth and seedling emergence. There are several different types of soil structure. It is inherently a dynamic and complex system that is affected by different factors. Overview Soil structure describes the arrangement of the solid parts of the soil and of the pore spaces located between them (Marshall & Holmes, 1979). Aggregation is the result of the interaction of soil particles through rearrangement, flocculation and cementation. It is enhanced by: the precipitation of oxides, hydroxides, carbonates and silicates; the products of biological activity (such as biofilms, fungal hyphae and glycoproteins); ionic bridging be ...
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Soil Life
Soil, also commonly referred to as earth or dirt, is a mixture of organic matter, minerals, gases, liquids, and organisms that together support life. Some scientific definitions distinguish ''dirt'' from ''soil'' by restricting the former term specifically to displaced soil. Soil consists of a solid phase of minerals and organic matter (the soil matrix), as well as a Porosity, porous phase that holds Soil gas, gases (the soil atmosphere) and water (the soil solution). Accordingly, soil is a three-state of matter, state system of solids, liquids, and gases. Soil is a product of several factors: the influence of climate, terrain, relief (elevation, orientation, and slope of terrain), organisms, and the soil's parent materials (original minerals) interacting over time. It continually undergoes development by way of numerous physical, chemical and biological processes, which include weathering with associated erosion. Given its complexity and strong internal connectedness, Soil e ...
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Humus
In classical soil science, humus is the dark organic matter in soil that is formed by the decomposition of plant and animal matter. It is a kind of soil organic matter. It is rich in nutrients and retains moisture in the soil. Humus is the Latin word for "earth" or "ground". In agriculture, "humus" sometimes also is used to describe mature or natural compost extracted from a woodland or other spontaneous source for use as a soil conditioner. It is also used to describe a topsoil horizon that contains organic matter (''humus type'', ''humus form'', or ''humus profile''). Humus has many nutrients that improve the health of soil, nitrogen being the most important. The ratio of carbon to nitrogen (C:N) of humus commonly ranges between eight and fifteen with the median being about twelve. It also significantly affects the bulk density of soil. Humus is amorphous and lacks the "cellular cake structure characteristic of plants, micro-organisms or animals". Description The prim ...
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Carbon Cycle
The carbon cycle is the biogeochemical cycle by which carbon is exchanged among the biosphere, pedosphere, geosphere, hydrosphere, and atmosphere of the Earth. Carbon is the main component of biological compounds as well as a major component of many minerals such as limestone. Along with the nitrogen cycle and the water cycle, the carbon cycle comprises a sequence of events that are key to make Earth capable of sustaining life. It describes the movement of carbon as it is recycled and reused throughout the biosphere, as well as long-term processes of carbon sequestration to and release from carbon sinks. Carbon sinks in the land and the ocean each currently take up about one-quarter of anthropogenic carbon emissions each year. Humans have disturbed the biological carbon cycle for many centuries by modifying land use, and moreover with the recent industrial-scale mining of fossil carbon (coal, petroleum and gas extraction, and cement manufacture) from the geosphere. Carbon ...
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Soil Erosion
Soil erosion is the denudation or wearing away of the upper layer of soil. It is a form of soil degradation. This natural process is caused by the dynamic activity of erosive agents, that is, water, ice (glaciers), snow, air (wind), plants, and animals (including humans). In accordance with these agents, erosion is sometimes divided into water erosion, glacial erosion, snow erosion, wind (aeolean) erosion, zoogenic erosion and anthropogenic erosion such as tillage erosion. Soil erosion may be a slow process that continues relatively unnoticed, or it may occur at an alarming rate causing a serious loss of topsoil. The loss of soil from farmland may be reflected in reduced crop production potential, lower surface water quality and damaged drainage networks. Soil erosion could also cause sinkholes. Human activities have increased by 10–50 times the rate at which erosion is occurring world-wide. Excessive (or accelerated) erosion causes both "on-site" and "off-site" problem ...
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Soil Aggregate Stability
Soil aggregate stability is a measure of the ability of soil aggregates— soil particles that bind together—to resist breaking apart when exposed to external forces such as water erosion and wind erosion, shrinking and swelling processes, and tillage. Soil aggregate stability is a measure of soil structure and can be affected by soil management. Overview Aggregate stability is one of indicators of soil quality, as it combines soil physical, chemical, and biological properties. The formation of soil aggregates (or so-called secondary soil particles or peds) occurs due to interactions of primary soil particles (i.e., clay) through rearrangement, flocculation and cementation. Aggregate stability has a direct impact on soil pore size distribution, which affects soil water retention and water movement in soil, therefore affecting air movement. A soil with good soil structure typically has a mix of micro-, meso-, and macropores. Therefore, with more aggregation, you would expec ...
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Carbon Sequestration
Carbon sequestration is the process of storing carbon in a carbon pool. Carbon dioxide () is naturally captured from the atmosphere through biological, chemical, and physical processes. These changes can be accelerated through changes in land use and agricultural practices, such as converting crop land into land for non-crop fast growing plants. Artificial processes have been devised to produce similar effects, including large-scale, artificial capture and sequestration of industrially produced using subsurface saline aquifers, reservoirs, ocean water, aging oil fields, or other carbon sinks, bio-energy with carbon capture and storage, biochar, enhanced weathering, direct air capture and water capture when combined with storage. Forests, kelp beds, and other forms of plant life absorb carbon dioxide from the air as they grow, and bind it into biomass. However, these biological stores are considered volatile carbon sinks as the long-term sequestration cannot be guarant ...
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