Direct Linear Plot
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Direct Linear Plot
In biochemistry, the direct linear plot is a graphical method for enzyme kinetics data following the Michaelis–Menten equation. In this plot, observations are not plotted as points, but as ''lines'' in parameter space with axes K_\mathrm and V, such that each observation of a rate v_i at substrate concentration a_i is represented by a straight line with intercept -a_i on the K_\mathrm axis and v_i on the V axis. Ideally (in the absence of experimental error) the lines intersect at a unique point (\hat_\mathrm, \hat) whose coordinates provide the values of \hat_\mathrm and \hat. Comparison with other plots of the Michaelis–Menten equation The best known plots of the Michaelis–Menten equation, including the double-reciprocal plot of 1/v against 1/a, the Hanes plot of a/v against a, and the Eadie–Hofstee plot of v against v/a are all plots in observation space, with each observation represented by a point, and the parameters determined from the slope and intercepts of the lin ...
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Median
The median of a set of numbers is the value separating the higher half from the lower half of a Sample (statistics), data sample, a statistical population, population, or a probability distribution. For a data set, it may be thought of as the “middle" value. The basic feature of the median in describing data compared to the Arithmetic mean, mean (often simply described as the "average") is that it is not Skewness, skewed by a small proportion of extremely large or small values, and therefore provides a better representation of the center. Median income, for example, may be a better way to describe the center of the income distribution because increases in the largest incomes alone have no effect on the median. For this reason, the median is of central importance in robust statistics. Median is a 2-quantile; it is the value that partitions a set into two equal parts. Finite set of numbers The median of a finite list of numbers is the "middle" number, when those numbers are liste ...
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Coefficient Of Variation
In probability theory and statistics, the coefficient of variation (CV), also known as normalized root-mean-square deviation (NRMSD), percent RMS, and relative standard deviation (RSD), is a standardized measure of dispersion of a probability distribution or frequency distribution. It is defined as the ratio of the standard deviation \sigma to the mean \mu (or its absolute value, , and often expressed as a percentage ("%RSD"). The CV or RSD is widely used in analytical chemistry to express the precision and repeatability of an assay. It is also commonly used in fields such as engineering or physics when doing quality assurance studies and ANOVA gauge R&R, by economists and investors in economic models, in epidemiology, and in psychology/neuroscience. Definition The coefficient of variation (CV) is defined as the ratio of the standard deviation \sigma to the mean \mu, CV = \frac. It shows the extent of variability in relation to the mean of the population. The coefficien ...
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Standard Deviation
In statistics, the standard deviation is a measure of the amount of variation of the values of a variable about its Expected value, mean. A low standard Deviation (statistics), deviation indicates that the values tend to be close to the mean (also called the expected value) of the set, while a high standard deviation indicates that the values are spread out over a wider range. The standard deviation is commonly used in the determination of what constitutes an outlier and what does not. Standard deviation may be abbreviated SD or std dev, and is most commonly represented in mathematical texts and equations by the lowercase Greek alphabet, Greek letter Sigma, σ (sigma), for the population standard deviation, or the Latin script, Latin letter ''s'', for the sample standard deviation. The standard deviation of a random variable, Sample (statistics), sample, statistical population, data set, or probability distribution is the square root of its variance. (For a finite population, v ...
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Gaussian
Carl Friedrich Gauss (1777–1855) is the eponym of all of the topics listed below. There are over 100 topics all named after this German mathematician and scientist, all in the fields of mathematics, physics, and astronomy. The English eponymous adjective ''Gaussian'' is pronounced . Mathematics Algebra and linear algebra Geometry and differential geometry Number theory Cyclotomic fields *Gaussian period *Gaussian rational * Gauss sum, an exponential sum over Dirichlet characters ** Elliptic Gauss sum, an analog of a Gauss sum ** Quadratic Gauss sum Analysis, numerical analysis, vector calculus and calculus of variations Complex analysis and convex analysis * Gauss–Lucas theorem * Gauss's continued fraction, an analytic continued fraction derived from the hypergeometric functions * Gauss's criterion – described oEncyclopedia of Mathematics* Gauss's hypergeometric theorem, an identity on hypergeometric series * Gauss plane Statistics * Gauss ...
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Outlier
In statistics, an outlier is a data point that differs significantly from other observations. An outlier may be due to a variability in the measurement, an indication of novel data, or it may be the result of experimental error; the latter are sometimes excluded from the data set. An outlier can be an indication of exciting possibility, but can also cause serious problems in statistical analyses. Outliers can occur by chance in any distribution, but they can indicate novel behaviour or structures in the data-set, measurement error, or that the population has a heavy-tailed distribution. In the case of measurement error, one wishes to discard them or use statistics that are robust statistics, robust to outliers, while in the case of heavy-tailed distributions, they indicate that the distribution has high skewness and that one should be very cautious in using tools or intuitions that assume a normal distribution. A frequent cause of outliers is a mixture of two distributions, wh ...
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Tyrosine Aminotransferase
Tyrosine aminotransferase (or tyrosine transaminase) is an enzyme present in the liver and catalyzes the conversion of tyrosine to 4-hydroxyphenylpyruvate. L-tyrosine + 2-oxoglutarate \rightleftharpoons 4-hydroxyphenylpyruvate + L-glutamate In humans, the tyrosine aminotransferase protein is encoded by the ''TAT'' gene. A deficiency of the enzyme in humans can result in what is known as type II tyrosinemia, wherein there is an abundance of tyrosine as a result of tyrosine failing to undergo an aminotransferase reaction to form 4-hydroxyphenylpyruvate. Function Tyrosine aminotransferase (TAT) is a pyridoxal phosphate (PLP)-dependent enzyme that catalyzes the first and rate-limiting step in the degradation of the amino acid tyrosine, transferring its amino group to α-ketoglutarate to produce 4-hydroxyphenylpyruvate and glutamate. This reaction is essential for tyrosine catabolism and energy production, as the resulting products feed into the citric acid cycle. TAT i ...
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First Quadrant
In geometry, a Cartesian coordinate system (, ) in a plane is a coordinate system that specifies each point uniquely by a pair of real numbers called ''coordinates'', which are the signed distances to the point from two fixed perpendicular oriented lines, called '' coordinate lines'', ''coordinate axes'' or just ''axes'' (plural of ''axis'') of the system. The point where the axes meet is called the '' origin'' and has as coordinates. The axes directions represent an orthogonal basis. The combination of origin and basis forms a coordinate frame called the Cartesian frame. Similarly, the position of any point in three-dimensional space can be specified by three ''Cartesian coordinates'', which are the signed distances from the point to three mutually perpendicular planes. More generally, Cartesian coordinates specify the point in an -dimensional Euclidean space for any dimension . These coordinates are the signed distances from the point to mutually perpendicular fixed hyp ...
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Experimental Error
Observational error (or measurement error) is the difference between a measured value of a quantity and its unknown true value.Dodge, Y. (2003) ''The Oxford Dictionary of Statistical Terms'', OUP. Such errors are inherent in the measurement process; for example lengths measured with a ruler calibrated in whole centimeters will have a measurement error of several millimeters. The error or uncertainty of a measurement can be estimated, and is specified with the measurement as, for example, 32.3 ± 0.5 cm. Scientific observations are marred by two distinct types of errors, systematic errors on the one hand, and random, on the other hand. The effects of random errors can be mitigated by the repeated measurements. Constant or systematic errors on the contrary must be carefully avoided, because they arise from one or more causes which constantly act in the same way, and have the effect of always altering the result of the experiment in the same direction. They therefore alter the va ...
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Enzyme Kinetics
Enzyme kinetics is the study of the rates of enzyme catalysis, enzyme-catalysed chemical reactions. In enzyme kinetics, the reaction rate is measured and the effects of varying the conditions of the reaction are investigated. Studying an enzyme's chemical kinetics, kinetics in this way can reveal the catalytic mechanism of this enzyme, its role in metabolism, how its activity is controlled, and how a drug or a modifier (Enzyme inhibitor, inhibitor or Enzyme activator, activator) might affect the rate. An enzyme (E) is a protein molecule that serves as a biological catalyst to facilitate and accelerate a chemical reaction in the body. It does this through binding of another molecule, its Substrate (biochemistry), substrate (S), which the enzyme acts upon to form the desired product. The substrate binds to the active site of the enzyme to produce an enzyme-substrate complex ES, and is transformed into an enzyme-product complex EP and from there to product P, via a transition state ...
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Realistic Direct Linear Plot With Errors
Realism, Realistic, or Realists may refer to: In the arts *Realism (arts), the general attempt to depict subjects truthfully in different forms of the arts Arts movements related to realism include: *American Realism * Classical Realism *Literary realism, a movement from the mid-19th to the early 20th century *Magical realism, a genre of fiction and art that blurs the line between speculation and reality * Neorealism (art) **Italian neorealism (film) ** Indian neorealism (film) * New realism, a movement founded in 1960 *Realism (art movement), 19th-century painting group * Realistic Manifesto *Theatrical realism, one of the many types of theatre such as Naturalism * Vienna School of Fantastic Realism, an art movement * Socialist realism, an art style developed in the Soviet Union In philosophy *Philosophical realism Realist approaches in philosophy include: * Aesthetic realism (metaphysics) * Agential realism * Aristotelian realism * Australian realism *Austrian realism * C ...
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Parameter Space
The parameter space is the space of all possible parameter values that define a particular mathematical model. It is also sometimes called weight space, and is often a subset of finite-dimensional Euclidean space. In statistics, parameter spaces are particularly useful for describing parametric families of probability distributions. They also form the background for parameter estimation. In the case of extremum estimators for parametric models, a certain objective function is maximized or minimized over the parameter space. Theorems of existence and consistency of such estimators require some assumptions about the topology of the parameter space. For instance, compactness of the parameter space, together with continuity of the objective function, suffices for the existence of an extremum estimator. Sometimes, parameters are analyzed to view how they affect their statistical model. In that context, they can be viewed as inputs of a function, in which case the technical term for ...
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