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Davydov Soliton
Davydov soliton is a quantum quasiparticle representing an excitation propagating along the protein α-helix self-trapped amide I. It is a solution of the Davydov Hamiltonian. It is named for the Soviet and Ukrainian physicist Alexander Davydov. The Davydov model describes the interaction of the amide I vibrations with the hydrogen bonds that stabilize the α-helix of proteins. The elementary excitations within the α-helix are given by the phonons which correspond to the deformational oscillations of the lattice, and the excitons which describe the internal amide I excitations of the peptide groups. Referring to the atomic structure of an α-helix region of protein the mechanism that creates the Davydov soliton (polaron, exciton) can be described as follows: vibrational energy of the C=O stretching (or amide I) oscillators that is localized on the α-helix acts through a phonon coupling effect to distort the structure of the α-helix, while the helical distortion reacts ...
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Soliton
In mathematics and physics, a soliton or solitary wave is a self-reinforcing wave packet that maintains its shape while it propagates at a constant velocity. Solitons are caused by a cancellation of nonlinear and dispersive effects in the medium. (Dispersive effects are a property of certain systems where the speed of a wave depends on its frequency.) Solitons are the solutions of a widespread class of weakly nonlinear dispersive partial differential equations describing physical systems. The soliton phenomenon was first described in 1834 by John Scott Russell (1808–1882) who observed a solitary wave in the Union Canal in Scotland. He reproduced the phenomenon in a wave tank and named it the "Wave of Translation". Definition A single, consensus definition of a soliton is difficult to find. ascribe three properties to solitons: # They are of permanent form; # They are localized within a region; # They can interact with other solitons, and emerge from the collision unchanged, e ...
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Creation And Annihilation Operator
Creation operators and annihilation operators are mathematical operators that have widespread applications in quantum mechanics, notably in the study of quantum harmonic oscillators and many-particle systems. An annihilation operator (usually denoted \hat) lowers the number of particles in a given state by one. A creation operator (usually denoted \hat^\dagger) increases the number of particles in a given state by one, and it is the adjoint of the annihilation operator. In many subfields of physics and chemistry, the use of these operators instead of wavefunctions is known as second quantization. They were introduced by Paul Dirac. Creation and annihilation operators can act on states of various types of particles. For example, in quantum chemistry and many-body theory the creation and annihilation operators often act on electron states. They can also refer specifically to the ladder operators for the quantum harmonic oscillator. In the latter case, the raising operator is in ...
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Boson
In particle physics, a boson ( ) is a subatomic particle whose spin quantum number has an integer value (0,1,2 ...). Bosons form one of the two fundamental classes of subatomic particle, the other being fermions, which have odd half-integer spin (,, ...). Every observed subatomic particle is either a boson or a fermion. Bosons are named after physicist Satyendra Nath Bose. Some bosons are elementary particles and occupy a special role in particle physics unlike that of fermions, which are sometimes described as the constituents of "ordinary matter". Some elementary bosons (for example, gluons) act as force carriers, which give rise to forces between other particles, while one (the Higgs boson) gives rise to the phenomenon of mass. Other bosons, such as mesons, are composite particles made up of smaller constituents. Outside the realm of particle physics, superfluidity arises because composite bosons (bose particles), such as low temperature helium-4 atoms, follow Bose–E ...
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Dipole
In physics, a dipole () is an electromagnetic phenomenon which occurs in two ways: *An electric dipole deals with the separation of the positive and negative electric charges found in any electromagnetic system. A simple example of this system is a pair of charges of equal magnitude but opposite sign separated by some typically small distance. (A permanent electric dipole is called an electret.) *A magnetic dipole is the closed circulation of an electric current system. A simple example is a single loop of wire with constant current through it. A bar magnet is an example of a magnet with a permanent magnetic dipole moment. Dipoles, whether electric or magnetic, can be characterized by their dipole moment, a vector quantity. For the simple electric dipole, the electric dipole moment points from the negative charge towards the positive charge, and has a magnitude equal to the strength of each charge times the separation between the charges. (To be precise: for the definition of t ...
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Joule
The joule ( , ; symbol: J) is the unit of energy in the International System of Units (SI). It is equal to the amount of work done when a force of 1 newton displaces a mass through a distance of 1 metre in the direction of the force applied. It is also the energy dissipated as heat when an electric current of one ampere passes through a resistance of one ohm for one second. It is named after the English physicist James Prescott Joule (1818–1889). Definition In terms of SI base units and in terms of SI derived units with special names, the joule is defined as One joule can also be defined by any of the following: * The work required to move an electric charge of one coulomb through an electrical potential difference of one volt, or one coulomb-volt (C⋅V). This relationship can be used to define the volt. * The work required to produce one watt of power for one second, or one watt-second (W⋅s) (compare kilowatt-hour, which is 3.6 megajoules). This relationship can b ...
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Zepto-
A metric prefix is a unit prefix that precedes a basic unit of measure to indicate a multiple or submultiple of the unit. All metric prefixes used today are decadic. Each prefix has a unique symbol that is prepended to any unit symbol. The prefix ''kilo-'', for example, may be added to ''gram'' to indicate ''multiplication'' by one thousand: one kilogram is equal to one thousand grams. The prefix ''milli-'', likewise, may be added to ''metre'' to indicate ''division'' by one thousand; one millimetre is equal to one thousandth of a metre. Decimal multiplicative prefixes have been a feature of all forms of the metric system, with six of these dating back to the system's introduction in the 1790s. Metric prefixes have also been used with some non-metric units. The SI prefixes are metric prefixes that were standardised for use in the International System of Units (SI) by the International Bureau of Weights and Measures (BIPM) in resolutions dating from 1960 to 2022. Since 2009, the ...
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Fundamental Interaction
In physics, the fundamental interactions, also known as fundamental forces, are the interactions that do not appear to be reducible to more basic interactions. There are four fundamental interactions known to exist: the gravitational and electromagnetic interactions, which produce significant long-range forces whose effects can be seen directly in everyday life, and the strong and weak interactions, which produce forces at minuscule, subatomic distances and govern nuclear interactions. Some scientists hypothesize that a fifth force might exist, but these hypotheses remain speculative. Each of the known fundamental interactions can be described mathematically as a ''field''. The gravitational force is attributed to the curvature of spacetime, described by Einstein's general theory of relativity. The other three are discrete quantum fields, and their interactions are mediated by elementary particles described by the Standard Model of particle physics. Within the Standard Mode ...
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Lattice Model (physics)
In mathematical physics, a lattice model is a mathematical model of a physical system that is defined on a lattice, as opposed to a continuum, such as the continuum of space or spacetime. Lattice models originally occurred in the context of condensed matter physics, where the atoms of a crystal automatically form a lattice. Currently, lattice models are quite popular in theoretical physics, for many reasons. Some models are exactly solvable, and thus offer insight into physics beyond what can be learned from perturbation theory. Lattice models are also ideal for study by the methods of computational physics, as the discretization of any continuum model automatically turns it into a lattice model. The exact solution to many of these models (when they are solvable) includes the presence of solitons. Techniques for solving these include the inverse scattering transform and the method of Lax pairs, the Yang–Baxter equation and quantum groups. The solution of these models has given i ...
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Energy Operator
In quantum mechanics, energy is defined in terms of the energy operator, acting on the wave function of the system as a consequence of time translation symmetry. Definition It is given by: \hat = i\hbar\frac It acts on the wave function (the probability amplitude for different configurations of the system) \Psi\left(\mathbf, t\right) Application The energy operator corresponds to the full energy of a system. The Schrödinger equation describes the space- and time-dependence of the slow changing (non- relativistic) wave function of a quantum system. The solution of this equation for a bound system is discrete (a set of permitted states, each characterized by an energy level) which results in the concept of quanta. Schrödinger equation Using the energy operator to the Schrödinger equation: i\hbar\frac \Psi(\mathbf,\,t) = \hat H \Psi(\mathbf,t) can be obtained: \hat\Psi(\mathbf, t) = \hat \Psi(\mathbf, t) where ''i'' is the imaginary unit, ''ħ'' is the reduced Planck ...
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Polaron
A polaron is a quasiparticle used in condensed matter physics to understand the interactions between electrons and atoms in a solid material. The polaron concept was proposed by Lev Landau in 1933 and Solomon Pekar in 1946 to describe an electron moving in a dielectric crystal where the atoms displace from their equilibrium positions to effectively screen the charge of an electron, known as a phonon cloud. This lowers the electron mobility and increases the electron's effective mass. The general concept of a polaron has been extended to describe other interactions between the electrons and ions in metals that result in a bound state, or a lowering of energy compared to the non-interacting system. Major theoretical work has focused on solving Fröhlich and Holstein Hamiltonians. This is still an active field of research to find exact numerical solutions to the case of one or two electrons in a large crystal lattice, and to study the case of many interacting electrons. Experime ...
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Spontaneous Symmetry Breaking
Spontaneous symmetry breaking is a spontaneous process of symmetry breaking, by which a physical system in a symmetric state spontaneously ends up in an asymmetric state. In particular, it can describe systems where the equations of motion or the Lagrangian obey symmetries, but the lowest-energy vacuum solutions do not exhibit that same symmetry. When the system goes to one of those vacuum solutions, the symmetry is broken for perturbations around that vacuum even though the entire Lagrangian retains that symmetry. Overview By definition, spontaneous symmetry breaking requires the existence of physical laws (e.g. quantum mechanics) which are invariant under a symmetry transformation (such as translation or rotation), so that any pair of outcomes differing only by that transformation have the same probability distribution. For example if measurements of an observable at any two different positions have the same probability distribution, the observable has translational symmetry. ...
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