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Association Mapping
In genetics, association mapping, also known as "linkage disequilibrium mapping", is a method of mapping quantitative trait loci (QTLs) that takes advantage of historic linkage disequilibrium to link phenotypes (observable characteristics) to genotypes (the genetic constitution of organisms), uncovering genetic associations. Theory Association mapping is based on the idea that traits that have entered a population only recently will still be linked to the surrounding genetic sequence of the original evolutionary ancestor, or in other words, will more often be found within a given haplotype, than outside of it. It is most often performed by scanning the entire genome for significant associations between a panel of single nucleotide polymorphisms (SNPs) (which, in many cases are spotted onto glass slides to create " SNP chips") and a particular phenotype. These associations must then be independently verified in order to show that they either (a) contribute to the trait of interest dir ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Linkage Disequilibrium
In population genetics, linkage disequilibrium (LD) is the non-random association of alleles at different loci in a given population. Loci are said to be in linkage disequilibrium when the frequency of association of their different alleles is higher or lower than what would be expected if the loci were independent and associated randomly. Linkage disequilibrium is influenced by many factors, including selection, the rate of genetic recombination, mutation rate, genetic drift, the system of mating, population structure, and genetic linkage. As a result, the pattern of linkage disequilibrium in a genome is a powerful signal of the population genetic processes that are structuring it. In spite of its name, linkage disequilibrium may exist between alleles at different loci without any genetic linkage between them and independently of whether or not allele frequencies are in equilibrium (not changing with time). Furthermore, linkage disequilibrium is sometimes referred to as gamet ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Obesity
Obesity is a medical condition, sometimes considered a disease, in which excess body fat has accumulated to such an extent that it may negatively affect health. People are classified as obese when their body mass index (BMI)—a person's weight divided by the square of the person's height—is over ; the range is defined as overweight. Some East Asian countries use lower values to calculate obesity. Obesity is a major cause of disability and is correlated with various diseases and conditions, particularly cardiovascular diseases, type 2 diabetes, obstructive sleep apnea, certain types of cancer, and osteoarthritis. Obesity has individual, socioeconomic, and environmental causes. Some known causes are diet, physical activity, automation, urbanization, genetic susceptibility, medications, mental disorders, economic policies, endocrine disorders, and exposure to endocrine-disrupting chemicals. While a majority of obese individuals at any given time are attempting to ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Genome-wide Association Study
In genomics, a genome-wide association study (GWA study, or GWAS), also known as whole genome association study (WGA study, or WGAS), is an observational study of a genome-wide set of Single-nucleotide polymorphism, genetic variants in different individuals to see if any variant is associated with a trait. GWA studies typically focus on associations between single-nucleotide polymorphisms (SNPs) and traits like major human diseases, but can equally be applied to any other genetic variants and any other organisms. When applied to human data, GWA studies compare the DNA of participants having varying phenotypes for a particular trait or disease. These participants may be people with a disease (cases) and similar people without the disease (controls), or they may be people with different phenotypes for a particular trait, for example blood pressure. This approach is known as phenotype-first, in which the participants are classified first by their clinical manifestation(s), as oppose ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Association (ecology)
In phytosociology and community ecology an association is a type of ecological community with a predictable species composition and consistent physiognomy (structural appearance) which occurs in a particular habitat type. The term was first coined by Alexander von Humboldt and formalised by the International Botanical Congress in 1910. An association can be viewed as a real, integrated entity shaped either by species interactions or by similar habitat requirements, or it can be viewed as merely a common point along a continuum. The former view was championed by American ecologist Frederic Clements, who viewed the association as a whole that was more than the sum of its parts, and by Josias Braun-Blanquet, a Swiss-born phytosociologist. On the other end of the argument was American ecologist Henry Gleason, who saw these groupings of plant species as a coincidence produced by the "fluctuation and fortuitous immigration of plants, and an equally fluctuating and variable environment". ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Hindawi (publisher)
Hindawi is a publisher of peer-reviewed, open access, scientific journals currently active in scientific, technical, and medical (STM) literature. It was founded in 1997 in Cairo, Egypt, but purchased in 2021 by John Wiley & Sons, a publishing company based in the United States. The company has its headquarters in London, an office in Cairo, and a virtual office address in New York City. As of 2022, Hindawi publishes over 250 journals, including 64 journals indexed within the Science Citation Index Expanded, and 1 journal indexed within the Social Sciences Citation Index, with a total of 64 journals ranked with an impact factor. Since 2007, all of Hindawi's journals have been open access and published under a Creative Commons Attribution License (CC-BY). It is a founding member of the Open Access Scholarly Publishers Association, a participating publisher and supporter of the Initiative for Open Citations, and a member of the Committee on Publication Ethics (COPE). In 2010, Hind ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
International Journal Of Plant Genomics ...
This is a list of academic journals published by Hindawi. A B C D E G H I J L M N O P Q R S T U V W References {{Reflist External linksList of journals published by Hindawi * Hindawi Hindawi or Hindavi can refer to: *Hindawi affair *Hindustani language (Hindi-Urdu), Central Indo-Aryan languages, or any language of the Hindi Belt *Something of, from, or related to Hind or Hindustan (another name of India) * Hindawi Programming S ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Linkage Disequilibrium
In population genetics, linkage disequilibrium (LD) is the non-random association of alleles at different loci in a given population. Loci are said to be in linkage disequilibrium when the frequency of association of their different alleles is higher or lower than what would be expected if the loci were independent and associated randomly. Linkage disequilibrium is influenced by many factors, including selection, the rate of genetic recombination, mutation rate, genetic drift, the system of mating, population structure, and genetic linkage. As a result, the pattern of linkage disequilibrium in a genome is a powerful signal of the population genetic processes that are structuring it. In spite of its name, linkage disequilibrium may exist between alleles at different loci without any genetic linkage between them and independently of whether or not allele frequencies are in equilibrium (not changing with time). Furthermore, linkage disequilibrium is sometimes referred to as gamet ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Quantitative Trait Locus
A quantitative trait locus (QTL) is a locus (section of DNA) that correlates with variation of a quantitative trait in the phenotype of a population of organisms. QTLs are mapped by identifying which molecular markers (such as SNPs or AFLPs) correlate with an observed trait. This is often an early step in identifying the actual genes that cause the trait variation. Definition A quantitative trait locus (QTL) is a region of DNA which is associated with a particular phenotypic trait, which varies in degree and which can be attributed to polygenic effects, i.e., the product of two or more genes, and their environment. . These QTLs are often found on different chromosomes. The number of QTLs which explain variation in the phenotypic trait indicates the genetic architecture of a trait. It may indicate that plant height is controlled by many genes of small effect, or by a few genes of large effect. Typically, QTLs underlie continuous traits (those traits which vary continuously, ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Family Based QTL Mapping
Quantitative trait loci mapping or QTL mapping is the process of identifying genomic regions that potentially contain genes responsible for important economic, health or environmental characters. Mapping QTLs is an important activity that plant breeders and geneticists routinely use to associate potential causal genes with phenotypes of interest. Family-based QTL mapping is a variant of QTL mapping where multiple-families are used. Pedigree in humans and wheat Pedigree information include information about ancestry. Keeping pedigree records is a centuries-old tradition. Pedigrees can also be verified using gene-marker data. In plants The method has been discussed in the context of plant breeding populations. Pedigree records are kept by plants breeders and pedigree-based selection is popular in several plant species. Plant pedigrees are different from that of humans, particularly as plant are hermaphroditic – an individual can be male or female and mating can be performed ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Nested Association Mapping
Nested association mapping (NAM) is a technique designed by the labs of Edward BucklerJames Holland anfor identifying and dissecting the genetic architecture of complex traits in corn (''Zea mays''). It is important to note that nested association mapping (unlike association mapping) is a specific technique that cannot be performed outside of a specifically designed population such as the Maize NAM population, the details of which are described below. Theory behind NAM NAM was created as a means of combining the advantages and eliminating the disadvantages of two traditional methods for identifying quantitative trait loci: linkage analysis and association mapping. Linkage analysis depends upon recent genetic recombination between two different plant lines (as the result of a genetic cross) to identify general regions of interest, with the advantage of requiring few genetic markers to ensure genome wide coverage and high statistical power per allele. Linkage analysis, however, has ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
GWAS
In genomics, a genome-wide association study (GWA study, or GWAS), also known as whole genome association study (WGA study, or WGAS), is an observational study of a genome-wide set of Single-nucleotide polymorphism, genetic variants in different individuals to see if any variant is associated with a trait. GWA studies typically focus on associations between single-nucleotide polymorphisms (SNPs) and traits like major human diseases, but can equally be applied to any other genetic variants and any other organisms. When applied to human data, GWA studies compare the DNA of participants having varying phenotypes for a particular trait or disease. These participants may be people with a disease (cases) and similar people without the disease (controls), or they may be people with different phenotypes for a particular trait, for example blood pressure. This approach is known as phenotype-first, in which the participants are classified first by their clinical manifestation(s), as oppose ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Alzheimer's Disease
Alzheimer's disease (AD) is a neurodegeneration, neurodegenerative disease that usually starts slowly and progressively worsens. It is the cause of 60–70% of cases of dementia. The most common early symptom is difficulty in short-term memory, remembering recent events. As the disease advances, symptoms can include primary progressive aphasia, problems with language, Orientation (mental), disorientation (including easily getting lost), mood swings, loss of motivation, self-neglect, and challenging behaviour, behavioral issues. As a person's condition declines, they often withdraw from family and society. Gradually, bodily functions are lost, ultimately leading to death. Although the speed of progression can vary, the typical life expectancy following diagnosis is three to nine years. The cause of Alzheimer's disease is poorly understood. There are many environmental and genetic risk factors associated with its development. The strongest genetic risk factor is from an alle ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
