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Aquimarina Muelleri
''Aquimarina muelleri'' is a Gram-negative, strictly aerobic, heterotrophic and motile bacterium from the genus of Aquimarina which has been isolated from sea-water from the Amur Bay Amur Bay (russian: Амурский Залив, ''Amurskiy Zaliv''), a major bay within Peter the Great Gulf of the Sea of Japan, has an approximate length of , a width of to , and a depth of . It is part of a larger bay formed with Ussuri B .... References External linksType strain of ''Aquimarina muelleri'' at Bac''Dive'' - the Bacterial Diversity Metadatabase Flavobacteria Bacteria described in 2005 {{Flavobacteria-stub ...
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Bacteria
Bacteria (; singular: bacterium) are ubiquitous, mostly free-living organisms often consisting of one biological cell. They constitute a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria were among the first life forms to appear on Earth, and are present in most of its habitats. Bacteria inhabit soil, water, acidic hot springs, radioactive waste, and the deep biosphere of Earth's crust. Bacteria are vital in many stages of the nutrient cycle by recycling nutrients such as the fixation of nitrogen from the atmosphere. The nutrient cycle includes the decomposition of dead bodies; bacteria are responsible for the putrefaction stage in this process. In the biological communities surrounding hydrothermal vents and cold seeps, extremophile bacteria provide the nutrients needed to sustain life by converting dissolved compounds, such as hydrogen sulphide and methane, to energy. Bacteria also live in symbiotic and parasitic relationsh ...
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Bacteroidota
The phylum Bacteroidota (synonym Bacteroidetes) is composed of three large classes of Gram-negative, nonsporeforming, anaerobic or aerobic, and rod-shaped bacteria that are widely distributed in the environment, including in soil, sediments, and sea water, as well as in the guts and on the skin of animals. Although some ''Bacteroides'' spp. can be opportunistic pathogens, many ''Bacteroidota'' are symbiotic species highly adjusted to the gastrointestinal tract. ''Bacteroides'' are highly abundant in intestines, reaching up to 1011 cells g−1 of intestinal material. They perform metabolic conversions that are essential for the host, such as degradation of proteins or complex sugar polymers. ''Bacteroidota'' colonize the gastrointestinal tract already in infants, as non-digestible oligosaccharides in mother milk support the growth of both ''Bacteroides'' and ''Bifidobacterium'' spp. ''Bacteroides'' spp. are selectively recognized by the immune system of the host through specific ...
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Flavobacteriia
The class Flavobacteriia is composed of a single order of environmental bacteria. According to Bernardet ''et al''., Flavobacteriia are Gram-negative aerobic rods, 2–5 μm long, 0.3–0.5 μm wide, with rounded or tapered ends that are motile by gliding, yellow (cream to orange) colonies on agar, decompose several polysaccharides but not cellulose, G+C contents of 32–37%, and are widely distributed in soil and fresh and seawater habitats. In particular, Flavobacteriia are prominent members of marine biofilms. The type species ''Flavobacterium aquatile'' was isolated from a well in Kent, England. Flavobacteriia are a group of commensal bacteria and opportunistic pathogens. ''Flavobacterium psychrophilum'' causes the septicemic diseases rainbow trout fry syndrome and bacterial cold water disease Bacterial cold water disease (BCWD) is a bacterial disease of freshwater fish, specifically salmonid fish. It is caused by the bacterium '' Flavobacterium psych ...
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Flavobacteriales
The order Flavobacteriales comprises several families of environmental bacteria. Comparative genomics and molecular signatures ''Flavobacteriales'' is of one of the orders from the phylum ''Bacteroidota''. Comparative genomic studies have identified several conserved indels, as well as 27 proteins that are uniquely shared by different sequenced Flavobacteriales and Bacteroidota species supporting this inference. Additionally, these studies have also identified 38 proteins that seem to be specific for the species from the order ''Flavobacteriales''. Of these proteins, 26 were present in all sequenced species, while the remaining 12 were missing in only one or two species. These signature proteins provide potential molecular markers for this order. Several proteins have also been identified which are unique to the ''Flavobacteriales'' and ''Bacteroidales'' orders, indicating the species from these two orders shared a common ancestor exclusive of other ''Bacteroidota''. Phylogeny T ...
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Flavobacteriaceae
The family Flavobacteriaceae is composed of environmental bacteria. Most species are aerobic, while some are microaerobic to anaerobic; for example ''Capnocytophaga'' and '' Coenonia''. Genera The family ''Flavobacteriaceae'' comprises the following genera: * '' Actibacter'' Kim ''et al''. 2008 * '' Aequorivita'' Bowman and Nichols 2002 * '' Aestuariibaculum'' Jeong ''et al''. 2013 * '' Aestuariimonas'' Park ''et al''. 2018 * '' Aestuariivivens'' Park ''et al''. 2015 * '' Algibacter'' Nedashkovskaya ''et al''. 2004 * '' Algitalea'' Yoon ''et al''. 2015 * "''Algorimicrobium''" García-López ''et al''. 2019 * "''Altibacter''" Chen ''et al''. 2014 * "''Altuibacter''" Chen ''et al''. 2013 * '' Amniculibacterium'' Chen ''et al''. 2020 * "''Candidatus'' Amoebinatus" Greub ''et al''. 2004 * '' Antarcticibacterium'' Li ''et al''. 2018 * '' Antarcticimonas'' Yang ''et al''. 2014 * '' Aquaticitalea'' Xamxidin ''et al''. 2016 * '' Aquibacter'' Hameed ''et al''. 2014 * '' Aquimarina'' Ned ...
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Aquimarina
''Aquimarina'' is a strictly aerobic and halophilic bacterial genus from the family of Flavobacteriaceae. ''Aquimarina'' can cause diseases in marine eukaryotes Eukaryotes () are organisms whose cells have a nucleus. All animals, plants, fungi, and many unicellular organisms, are Eukaryotes. They belong to the group of organisms Eukaryota or Eukarya, which is one of the three domains of life. Bacte .... References Further reading * Flavobacteria Bacteria genera Halophiles {{Flavobacteria-stub ...
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LPSN
List of Prokaryotic names with Standing in Nomenclature (LPSN) is an online database that maintains information on the naming and taxonomy of prokaryotes, following the taxonomy requirements and rulings of the International Code of Nomenclature of Prokaryotes The International Code of Nomenclature of Prokaryotes (ICNP) formerly the International Code of Nomenclature of Bacteria (ICNB) or Bacteriological Code (BC) governs the scientific names for Bacteria and Archaea.P. H. A. Sneath, 2003. A short hist .... The database was curated from 1997 to June 2013 by Jean P. Euzéby. From July 2013 to January 2020, LPSN was curated by Aidan C. Parte. In February 2020, a new version of LPSN was published as a service of the Leibniz Institute DSMZ, thereby also integrating the Prokaryotic Nomenclature Up-to-date service. References External links List of Prokaryotic names with Standing in Nomenclature
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Gram-negative
Gram-negative bacteria are bacteria that do not retain the crystal violet stain used in the Gram staining method of bacterial differentiation. They are characterized by their cell envelopes, which are composed of a thin peptidoglycan cell wall sandwiched between an inner cytoplasmic cell membrane and a bacterial outer membrane. Gram-negative bacteria are found in virtually all environments on Earth that support life. The gram-negative bacteria include the model organism ''Escherichia coli'', as well as many pathogenic bacteria, such as ''Pseudomonas aeruginosa'', ''Chlamydia trachomatis'', and ''Yersinia pestis''. They are a significant medical challenge as their outer membrane protects them from many antibiotics (including penicillin), detergents that would normally damage the inner cell membrane, and lysozyme, an antimicrobial enzyme produced by animals that forms part of the innate immune system. Additionally, the outer leaflet of this membrane comprises a complex lipo ...
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Aerobic Organism
Aerobic means "requiring air," in which "air" usually means oxygen. Aerobic may also refer to * Aerobic exercise, prolonged exercise of moderate intensity * Aerobics, a form of aerobic exercise * Aerobic respiration, the aerobic process of cellular respiration * Aerobic organism Aerobic means "requiring air," in which "air" usually means oxygen. Aerobic may also refer to * Aerobic exercise, prolonged exercise of moderate intensity * Aerobics Aerobics is a form of physical exercise that combines rhythmic aerobic exe ..., a living thing with an oxygen-based metabolism See also * Anaerobic (other) {{disambiguation ...
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Heterotrophic
A heterotroph (; ) is an organism that cannot produce its own food, instead taking nutrition from other sources of organic carbon, mainly plant or animal matter. In the food chain, heterotrophs are primary, secondary and tertiary consumers, but not producers. Living organisms that are heterotrophic include all animals and fungi, some bacteria and protists, and many parasitic plants. The term heterotroph arose in microbiology in 1946 as part of a classification of microorganisms based on their type of nutrition. The term is now used in many fields, such as ecology in describing the food chain. Heterotrophs may be subdivided according to their energy source. If the heterotroph uses chemical energy, it is a chemoheterotroph (e.g., humans and mushrooms). If it uses light for energy, then it is a photoheterotroph (e.g., green non-sulfur bacteria). Heterotrophs represent one of the two mechanisms of nutrition (trophic levels), the other being autotrophs (''auto'' = self, ''troph'' = n ...
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Amur Bay
Amur Bay (russian: Амурский Залив, ''Amurskiy Zaliv''), a major bay within Peter the Great Gulf of the Sea of Japan, has an approximate length of , a width of to , and a depth of . It is part of a larger bay formed with Ussuri Bay, to which it is connected by the Eastern Bosphorus, and from which it is separated by the Muravyov-Amursky Peninsula and by the Eugénie Archipelago. The Amba River, Razdolnaya River, Narva River, and Barabashevka River all flow into Amur Bay. Administratively, Amur Bay is entirely within Primorsky Krai, Russia. Vladivostok, the largest city in the Russian Far East and the capital of Primorsky Krai, is situated along the eastern coast of the bay on the Muravyov-Amursky Peninsula and the Eugénie Archipelago. Part of the bay is crossed by the Amur Bay Bridge of the A-370 highway, which connects the with the . Amur Bay is a popular tourism and recreation area in Primorsky Krai, with many sanatoriums, beach resorts and children's summer ...
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Flavobacteria
The class Flavobacteriia is composed of a single order of environmental bacteria. According to Bernardet ''et al''., Flavobacteriia are Gram-negative aerobic rods, 2–5 μm long, 0.3–0.5 μm wide, with rounded or tapered ends that are motile by gliding, yellow (cream to orange) colonies on agar, decompose several polysaccharides but not cellulose, G+C contents of 32–37%, and are widely distributed in soil and fresh and seawater habitats. In particular, Flavobacteriia are prominent members of marine biofilms. The type species In zoological nomenclature, a type species (''species typica'') is the species name with which the name of a genus or subgenus is considered to be permanently taxonomically associated, i.e., the species that contains the biological type specime ... ''Flavobacterium aquatile'' was isolated from a well in Kent, England. Flavobacteriia are a group of commensal bacteria and opportunistic pathogens. '' Flavobacterium psychrophilum'' ...
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