Actinocatenispora
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Actinocatenispora
''Actinocatenispora'' is a genus in the phylum Actinomycetota (Bacteria). Etymology The name ''Actinocatenispora'' derives from Greek noun '' ()'', a beam, ray; Latin noun ', chain; Greek feminine gender noun '' ()'', seed, and in biology a spore; resulting in New Latin feminine gender noun ''Actinocatenispora'', spore chain-producing ray (fungus). Species The genus comprises the following species: * '' A. comari'' Oyunbileg et al. 2021 * '' A. rupis'' Seo and Lee 2009 (Latin genitive case noun ''rupis'', of a cliff, referring to the site from which the type strain was isolated.) * '' A. sera'' Matsumoto et al. 2007 (Latin feminine gender adjective ''sera'', late.) * '' A. thailandica'' Thawai et al. 2006 (New Latin feminine gender adjective ''thailandica'', of or belonging to Thailand, where the type strain was isolated.) Phylogeny The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechno ...
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Actinocatenispora Comari
''Actinocatenispora'' is a genus in the phylum Actinomycetota (Bacteria). Etymology The name ''Actinocatenispora'' derives from Ancient Greek language, Greek noun '' ()'', a beam, ray; Latin noun ', chain; Ancient Greek language, Greek grammatical gender, feminine gender noun '' ()'', seed, and in biology a spore; resulting in New Latin grammatical gender, feminine gender noun ''Actinocatenispora'', spore chain-producing ray (fungus). Species The genus comprises the following species: * ''Actinocatenispora comari, A. comari'' Oyunbileg et al. 2021 * ''Actinocatenispora rupis, A. rupis'' Seo and Lee 2009 (Latin Latin declension, genitive case noun ''rupis'', of a cliff, referring to the site from which the type strain was isolated.) * ''Actinocatenispora sera, A. sera'' Matsumoto et al. 2007 (Latin grammatical gender, feminine gender adjective ''sera'', late.) * ''Actinocatenispora thailandica, A. thailandica'' Thawai et al. 2006 (New Latin grammatical gender, feminine gender a ...
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Actinocatenispora Rupis
''Actinocatenispora rupis'' is an aerobic bacterium from the genus ''Actinocatenispora'' which has been isolated from cliff soil from Mara Island, Korea Korea ( ko, 한국, or , ) is a peninsular region in East Asia. Since 1945, it has been divided at or near the 38th parallel, with North Korea (Democratic People's Republic of Korea) comprising its northern half and South Korea (Republic o .... References Micromonosporaceae Bacteria described in 2009 {{Actinobacteria-stub ...
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Actinocatenispora Thailandica
''Actinocatenispora thailandica'' is a bacterium from the genus ''Actinocatenispora'' which has been isolated from soil in Thailand Thailand ( ), historically known as Siam () and officially the Kingdom of Thailand, is a country in Southeast Asia, located at the centre of the Indochinese Peninsula, spanning , with a population of almost 70 million. The country is bo .... References Micromonosporaceae Bacteria described in 2006 {{Actinobacteria-stub ...
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Actinocatenispora Sera
''Actinocatenispora sera'' is a bacterium from the genus ''Actinocatenispora ''Actinocatenispora'' is a genus in the phylum Actinomycetota (Bacteria). Etymology The name ''Actinocatenispora'' derives from Greek noun '' ()'', a beam, ray; Latin noun ', chain; Greek feminine gender noun '' ()'', seed, and in biology a s ...'' which has been isolated from soil in Niigata, Japan. References Micromonosporaceae Bacteria described in 2007 {{Actinobacteria-stub ...
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Microbiology
Microbiology () is the scientific study of microorganisms, those being unicellular (single cell), multicellular (cell colony), or acellular (lacking cells). Microbiology encompasses numerous sub-disciplines including virology, bacteriology, protistology, mycology, immunology, and parasitology. Eukaryotic microorganisms possess membrane-bound organelles and include fungi and protists, whereas prokaryotic organisms—all of which are microorganisms—are conventionally classified as lacking membrane-bound organelles and include Bacteria and Archaea. Microbiologists traditionally relied on culture, staining, and microscopy. However, less than 1% of the microorganisms present in common environments can be cultured in isolation using current means. Microbiologists often rely on molecular biology tools such as DNA sequence based identification, for example the 16S rRNA gene sequence used for bacteria identification. Viruses have been variably classified as organisms, as they have ...
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Bacterial Taxonomy
Bacterial taxonomy is the taxonomy, i.e. the rank-based classification, of bacteria. In the scientific classification established by Carl Linnaeus, each species has to be assigned to a genus ( binary nomenclature), which in turn is a lower level of a hierarchy of ranks (family, suborder, order, subclass, class, division/phyla, kingdom and domain). In the currently accepted classification of life, there are three domains (Eukaryotes, Bacteria and Archaea), which, in terms of taxonomy, despite following the same principles have several different conventions between them and between their subdivisions as they are studied by different disciplines (botany, zoology, mycology and microbiology). For example, in zoology there are type specimens, whereas in microbiology there are type strains. Diversity Prokaryotes share many common features, such as lack of nuclear membrane, unicellularity, division by binary-fission and generally small size. The various species differ amongst each ot ...
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Silva Comprehensive Ribosomal RNA Database
SILVA is a ribosomal RNA database established in collaboration between the Microbial Genomics Group at the Max Planck Institute for Marine Microbiology in Bremen, Germany, the Department of Microbiology at the Technical University Munich, and Ribocon. Release 117 of the database (January 2014) held more than 4,000,000 small subunit (SSU - 16S/18S) and 400,000 large subunit In structural biology, a protein subunit is a polypeptide chain or single protein molecule that assembles (or "''coassembles''") with others to form a protein complex. Large assemblies of proteins such as viruses often use a small number of ty ... (LSU - 23S/28S) sequences. Sequences are provided as files for the ARB software environment. See also * List of biological databases#RNA databases References {{reflist, refs= Marc P. Hoeppner, Lars E. Barquist, Paul P. Gardner (2014)An Introduction to RNA Databases ''Methods in Molecular Biology'' 1097: 107–123. {{doi, 10.1007/978-1-62703-709-9_6.
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All-Species Living Tree Project
The All-Species Living Tree' Project is a collaboration between various academic groups/institutes, such as ARB, SILVA rRNA database project, and LPSN, with the aim of assembling a database of 16S rRNA sequences of all validly published species of ''Bacteria'' and ''Archaea''. At one stage, 23S sequences were also collected, but this has since stopped. Currently there are over 10,950 species in the aligned dataset and several more are being added either as new species are discovered or species that are not represented in the database are sequenced. Initially the latter group consisted of 7% of species. Similar (and more recent) projects include the Genomic Encyclopedia of Bacteria and Archaea (GEBA), which focused on whole genome sequencing of bacteria and archaea. Tree The tree was created by maximum likelihood analysis without bootstrap: consequently accuracy is traded off for size and many phylum level clades are not correctly resolved (such as the Firmicutes). (Eukaryotes ...
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The All-Species Living Tree Project
The All-Species Living Tree' Project is a collaboration between various academic groups/institutes, such as ARB Project, ARB, SILVA rRNA database project, and List of Prokaryotic names with Standing in Nomenclature, LPSN, with the aim of assembling a database of 16S ribosomal RNA, 16S rRNA sequences of all validly published species of ''Bacteria'' and ''Archaea''. At one stage, 23S ribosomal RNA, 23S sequences were also collected, but this has since stopped. Currently there are over 10,950 species in the aligned dataset and several more are being added either as new species are discovered or species that are not represented in the database are sequenced. Initially the latter group consisted of 7% of species. Similar (and more recent) projects include the Genomic Encyclopedia of Bacteria and Archaea (GEBA), which focused on whole genome sequencing of bacteria and archaea. Tree The tree was created by maximum likelihood analysis without bootstrap: consequently accuracy is traded ...
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National Center For Biotechnology Information
The National Center for Biotechnology Information (NCBI) is part of the United States National Library of Medicine (NLM), a branch of the National Institutes of Health (NIH). It is approved and funded by the government of the United States. The NCBI is located in Bethesda, Maryland, and was founded in 1988 through legislation sponsored by US Congressman Claude Pepper. The NCBI houses a series of databases relevant to biotechnology and biomedicine and is an important resource for bioinformatics tools and services. Major databases include GenBank for DNA sequences and PubMed, a bibliographic database for biomedical literature. Other databases include the NCBI Epigenomics database. All these databases are available online through the Entrez search engine. NCBI was directed by David Lipman, one of the original authors of the BLAST sequence alignment program and a widely respected figure in bioinformatics. GenBank NCBI had responsibility for making available the GenBank DNA seque ...
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Latin Declension
Latin declension is the set of patterns according to which Latin words are declined—that is, have their endings altered to show grammatical case, number and gender. Nouns, pronouns, and adjectives are declined (verbs are conjugated), and a given pattern is called a declension. There are five declensions, which are numbered and grouped by ending and grammatical gender. Each noun follows one of the five declensions, but some irregular nouns have exceptions. Adjectives are of two kinds: those like 'good' use first-declension endings for the feminine, and second-declension for masculine and neuter. Other adjectives such as belong to the third declension. There are no fourth- or fifth-declension adjectives. Pronouns are also of two kinds, the personal pronouns such as 'I' and 'you ()', which have their own irregular declension, and the third-person pronouns such as 'this' and 'that' which can generally be used either as pronouns or adjectivally. These latter decline in a sim ...
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List Of Prokaryotic Names With Standing In Nomenclature
List of Prokaryotic names with Standing in Nomenclature (LPSN) is an online database that maintains information on the naming and taxonomy of prokaryotes, following the taxonomy requirements and rulings of the International Code of Nomenclature of Prokaryotes The International Code of Nomenclature of Prokaryotes (ICNP) formerly the International Code of Nomenclature of Bacteria (ICNB) or Bacteriological Code (BC) governs the scientific names for Bacteria and Archaea.P. H. A. Sneath, 2003. A short hist .... The database was curated from 1997 to June 2013 by Jean P. Euzéby. From July 2013 to January 2020, LPSN was curated by Aidan C. Parte. In February 2020, a new version of LPSN was published as a service of the Leibniz Institute DSMZ, thereby also integrating the Prokaryotic Nomenclature Up-to-date service. References External links List of Prokaryotic names with Standing in Nomenclature
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