Topic summary
Ortholog
Extracted from the Wikipedia article Sequence homology.
Databases of orthologous genes and de novo orthology inference tools
Given their tremendous importance for biology and bioinformatics, orthologous genes have been organized in several specialized databases that provide tools to identify and analyze orthologous gene sequences. These resources employ approaches that can be generally classified into those that use heuristic analysis of all pairwise sequence comparisons, and those that use phylogenetic methods. Sequence comparison methods were first pioneered in the COGs database in 1997. These methods have been extended and automated in twelve different databases the most advanced being AYbRAH Analyzing Yeasts by Reconstructing Ancestry of Homologs as well as these following databases right now. Some tools predict orthologous de novo from the input protein sequences, might not provide any Database. Among these tools are SonicParanoid and OrthoFinder.