Zetaproteobacteria
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Zetaproteobacteria
The class Zetaproteobacteria is the sixth and most recently described class of the Pseudomonadota. Zetaproteobacteria can also refer to the group of organisms assigned to this class. The Zetaproteobacteria were originally represented by a single described species, '' Mariprofundus ferrooxydans'', which is an iron-oxidizing neutrophilic chemolithoautotroph originally isolated from Kamaʻehuakanaloa Seamount (formerly Loihi) in 1996 (post-eruption). Molecular cloning techniques focusing on the small subunit ribosomal RNA gene have also been used to identify a more diverse majority of the Zetaproteobacteria that have as yet been unculturable. Regardless of culturing status, the Zetaproteobacteria show up worldwide in estuarine and marine habitats associated with opposing steep redox gradients of reduced (ferrous) iron and oxygen, either as a minor detectable component or as the dominant member of the microbial community. Zetaproteobacteria have been most commonly found at deep-sea ...
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Pseudomonadota
Pseudomonadota (synonym Proteobacteria) is a major phylum of Gram-negative bacteria. The renaming of phyla in 2021 remains controversial among microbiologists, many of whom continue to use the earlier names of long standing in the literature. The phylum Proteobacteria includes a wide variety of pathogenic genera, such as ''Escherichia'', '' Salmonella'', ''Vibrio'', ''Yersinia'', ''Legionella'', and many others.Slonczewski JL, Foster JW, Foster E. Microbiology: An Evolving Science 5th Ed. WW Norton & Company; 2020. Others are free-living (nonparasitic) and include many of the bacteria responsible for nitrogen fixation. Carl Woese established this grouping in 1987, calling it informally the "purple bacteria and their relatives". Because of the great diversity of forms found in this group, it was later informally named Proteobacteria, after Proteus, a Greek god of the sea capable of assuming many different shapes (not after the Proteobacteria genus ''Proteus''). In 2021 the Internat ...
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Mariprofundus
''Mariprofundus ferrooxydans'' is a neutrophilic, chemolithotrophic, Gram-negative bacterium which can grow by oxidising ferrous to ferric iron. It is one of the few members of the class Zetaproteobacteria in the phylum Pseudomonadota. It is typically found in iron-rich deep sea environments, particularly at hydrothermal vents. ''M. ferrooxydans'' characteristically produces stalks of solid iron oxyhydroxides that form into iron mats. Genes that have been proposed to catalyze Fe(II) oxidation in ''M. ferrooxydans'' are similar to those involved in known metal redox pathways, and thus it serves as a good candidate for a model iron oxidizing organism. Discovery The bacterium was isolated from iron-rich microbial mats associated with hydrothermal vents at a submarine volcano, Kamaʻehuakanaloa Seamount (formerly Lōʻihi), near Hawaii Hawaii ( ; haw, Hawaii or ) is a state in the Western United States, located in the Pacific Ocean about from the U.S. mainland. It is ...
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Mariprofundus Ferrooxydans
''Mariprofundus ferrooxydans'' is a neutrophilic, chemolithotrophic, Gram-negative bacterium which can grow by oxidising ferrous to ferric iron. It is one of the few members of the class Zetaproteobacteria in the phylum Pseudomonadota. It is typically found in iron-rich deep sea environments, particularly at hydrothermal vents. ''M. ferrooxydans'' characteristically produces stalks of solid iron oxyhydroxides that form into iron mats. Genes that have been proposed to catalyze Fe(II) oxidation in ''M. ferrooxydans'' are similar to those involved in known metal redox pathways, and thus it serves as a good candidate for a model iron oxidizing organism. Discovery The bacterium was isolated from iron-rich microbial mats associated with hydrothermal vents at a submarine volcano, Kamaʻehuakanaloa Seamount (formerly Lōʻihi), near Hawaii Hawaii ( ; haw, Hawaii or ) is a state in the Western United States, located in the Pacific Ocean about from the U.S. mainland. It is ...
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Kamaʻehuakanaloa Seamount
Kamaʻehuakanaloa Seamount (previously known as Lōʻihi) is an active submarine volcano about off the southeast coast of the island of Hawaii. The top of the seamount is about below sea level. This seamount is on the flank of Mauna Loa, the largest shield volcano on Earth. Kamaʻehuakanaloa is the newest volcano in the Hawaiian–Emperor seamount chain, a string of volcanoes that stretches about northwest of Kamaʻehuakanaloa. Unlike most active volcanoes in the Pacific Ocean that make up the active plate margins on the Pacific Ring of Fire, Kamaʻehuakanaloa and the other volcanoes of the Hawaiian–Emperor seamount chain are hotspot volcanoes and formed well away from the nearest plate boundary. Volcanoes in the Hawaiian Islands arise from the Hawaii hotspot, and as the youngest volcano in the chain, Kamaʻehuakanaloa is the only Hawaiian volcano in the deep submarine preshield stage of development. Kamaʻehuakanaloa began forming around 400,000 years ago and is expected t ...
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Mesophile
A mesophile is an organism that grows best in moderate temperature, neither too hot nor too cold, with an optimum growth range from . The optimum growth temperature for these organisms is 37°C. The term is mainly applied to microorganisms. Organisms that prefer extreme environments are known as extremophiles. Mesophiles have diverse classifications, belonging to two domains: Bacteria, Archaea, and to kingdom Fungi of domain Eucarya. Mesophiles belonging to the domain Bacteria can either be gram-positive or gram-negative. Oxygen requirements for mesophiles can be aerobic or anaerobic. There are three basic shapes of mesophiles: coccus, bacillus, and spiral. Habitat The habitats of mesophiles can include cheese and yogurt. They are often included during fermentation of beer and wine making. Since normal human body temperature is 37 °C, the majority of human pathogens are mesophiles, as are most of the organisms comprising the human microbiome. Mesophiles vs. extremophiles Meso ...
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Campylobacterota
Campylobacterota are a phylum of bacteria. All species of this phylum are Gram-negative. The Campylobacterota consist of few known genera, mainly the curved to spirilloid ''Wolinella'' spp., ''Helicobacter'' spp., and '' Campylobacter'' spp. Most of the known species inhabit the digestive tracts of animals and serve as symbionts (''Wolinella'' spp. in cattle) or pathogens (''Helicobacter'' spp. in the stomach, ''Campylobacter'' spp. in the duodenum). Many Campylobacterota are motile with flagella. Numerous environmental sequences and isolates of Campylobacterota have also been recovered from hydrothermal vents and cold seep habitats. Examples of isolates include ''Sulfurimonas autotrophica'', ''Sulfurimonas paralvinellae'', ''Sulfurovum lithotrophicum'' and ''Nautilia profundicola''. A member of the phylum Campylobacterota occurs as an endosymbiont in the large gills of the deepwater sea snail ''Alviniconcha hessleri''. The Campylobacterota found at deep-sea hydrothermal vents ...
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Gammaproteobacteria
Gammaproteobacteria is a class of bacteria in the phylum Pseudomonadota (synonym Proteobacteria). It contains about 250 genera, which makes it the most genera-rich taxon of the Prokaryotes. Several medically, ecologically, and scientifically important groups of bacteria belong to this class. It is composed by all Gram-negative microbes and is the most phylogenetically and physiologically diverse class of Proteobacteria. These microorganisms can live in several terrestrial and marine environments, in which they play various important roles, including ''extreme environments'' such as hydrothermal vents. They generally have different shapes - rods, curved rods, cocci, spirilla, and filaments and include free living bacteria, biofilm formers, commensals and symbionts, some also have the distinctive trait of being bioluminescent. Metabolisms found in the different genera are very different; there are both aerobic and anaerobic (obligate or facultative) species, chemolithoautotrophic ...
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Iron(III) Oxide-hydroxide
Iron(III) oxide-hydroxide or ferric oxyhydroxideA. L. Mackay (1960): "β-Ferric Oxyhydroxide". ''Mineralogical Magazine'' (''Journal of the Mineralogical Society''), volume 32, issue 250, pages 545-557. is the chemical compound of iron, oxygen, and hydrogen with formula . The compound is often encountered as one of its hydrates, ·''n'' ust The monohydrate · is often referred to as iron(III) hydroxide ,CAS , C.I. 77492 hydrated iron oxide, yellow iron oxide, or Pigment Yellow 42. Natural occurrences Minerals Anhydrous ferric hydroxide occurs in the nature as the exceedingly rare mineral bernalite, Fe(OH)3·''n''H2O (n=0.0-0.25). Iron oxyhydroxides, , are much more common and occur naturally as structurally different minerals (polymorphs) denoted by the Greek letters α, β, γ and δ. * Goethite, α-FeO(OH), has been used as an ochre pigment since prehistoric times. * Akaganeite is the β polymorph,A. L. Mackay (1962): "β-Ferric oxyhydroxide—akaganéite", ''Miner ...
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Bacteria
Bacteria (; singular: bacterium) are ubiquitous, mostly free-living organisms often consisting of one biological cell. They constitute a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria were among the first life forms to appear on Earth, and are present in most of its habitats. Bacteria inhabit soil, water, acidic hot springs, radioactive waste, and the deep biosphere of Earth's crust. Bacteria are vital in many stages of the nutrient cycle by recycling nutrients such as the fixation of nitrogen from the atmosphere. The nutrient cycle includes the decomposition of dead bodies; bacteria are responsible for the putrefaction stage in this process. In the biological communities surrounding hydrothermal vents and cold seeps, extremophile bacteria provide the nutrients needed to sustain life by converting dissolved compounds, such as hydrogen sulphide and methane, to energy. Bacteria also live in symbiotic and parasitic relationsh ...
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Ferric
In chemistry, iron(III) refers to the element iron in its +3 oxidation state. In ionic compounds (salts), such an atom may occur as a separate cation (positive ion) denoted by Fe3+. The adjective ferric or the prefix ferri- is often used to specify such compounds — as in "ferric chloride" for iron(III) chloride, . The adjective "ferrous" is used instead for iron(II) salts, containing the cation Fe2+. The word ferric is derived from the Latin word ''ferrum'' for iron. Iron(III) metal centres also occur in coordination complexes, such as in the anion ferrioxalate, , where three bidentate oxalate ions surrounding the metal centre; or, in organometallic compounds, such as the ferrocenium cation , where two cyclopentadienyl anions are bound to the FeIII centre. Iron is almost always encountered in the oxidation states 0 (as in the metal), +2, or +3. Iron(III) is usually the most stable form in air, as illustrated by the pervasiveness of rust, an insoluble iron(III)-containing ...
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