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Delphibacteria
Delphibacteria is a candidate bacterial phylum in the FCB group. The phylum was first proposed after analysis of two genomes from the mouths of two bottlenose dolphins. "Dephibacteria" was proposed in recognition of the first genomic representatives having been recovered from the dolphin mouth. Members of the Delphibacteria phylum have been retroactively detected in a variety of environments. Description Delphibacteria is a bacterial phylum with candidate status, meaning it has no cultured representatives as of yet. It is part of the FCB group. History The phylum was first proposed following the recovery and analysis of two genomes, each from the mouth of a different bottlenose dolphin. These dolphins were part of the US Navy's Marine Mammal Program, although Delphibacteria 16S rRNA genes have also been detected in the mouths of wild dolphins living off the coast of Florida, U.S. The first characterized member of the Delphibacteria phylum was inferred to be a heterotro ...
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Bacteria
Bacteria (; singular: bacterium) are ubiquitous, mostly free-living organisms often consisting of one biological cell. They constitute a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria were among the first life forms to appear on Earth, and are present in most of its habitats. Bacteria inhabit soil, water, acidic hot springs, radioactive waste, and the deep biosphere of Earth's crust. Bacteria are vital in many stages of the nutrient cycle by recycling nutrients such as the fixation of nitrogen from the atmosphere. The nutrient cycle includes the decomposition of dead bodies; bacteria are responsible for the putrefaction stage in this process. In the biological communities surrounding hydrothermal vents and cold seeps, extremophile bacteria provide the nutrients needed to sustain life by converting dissolved compounds, such as hydrogen sulphide and methane, to energy. Bacteria also live in symbiotic and parasitic relationsh ...
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Bacterial Phyla
Bacterial phyla constitute the major lineages of the domain ''Bacteria''. While the exact definition of a bacterial phylum is debated, a popular definition is that a bacterial phylum is a monophyletic lineage of bacteria whose 16S rRNA genes share a pairwise sequence identity of ~75% or less with those of the members of other bacterial phyla. It has been estimated that ~1,300 bacterial phyla exist. As of May 2020, 41 bacterial phyla are formally accepted by the LPSN, 89 bacterial phyla are recognized on thSilva database dozens more have been proposed, and hundreds likely remain to be discovered. As of 2017, approximately 72% of widely recognized bacterial phyla were candidate phyla (i.e. have no cultured representatives). There are no fixed rules to the nomenclature of bacterial phyla. It was proposed that the suffix "-bacteria" be used for phyla. List of bacterial phyla The following is a list of bacterial phyla that have been proposed. Supergroups Despite the unclear ...
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FCB Group
FCB may refer to: Banks * Fairfield County Bank, in the United States * Farm Credit Bank, part of the Farm Credit System in the United States * Florida Community Bank, in the United States * First Community Bank, in Kenya * First Consolidated Bank, in the Philippines Football clubs * FC Baník Ostrava, Czech Republic * FC Barcelona, Spain ** FC Barcelona Femení, women's section of the above * FC Basel, Switzerland * FC Bayern Munich, Germany ** FC Bayern Munich, women's section of the above * FC Bendigo, Australia * 1. FC Bocholt, Germany * Club Brugge KV, Belgium * FK Budućnost Podgorica, Montenegro * FC Büsingen, Germany Other uses * FCB (advertising agency), an American advertising agency (Foote, Cone & Belding). * FCB group in the classification of bacteria * File Control Block * Fluocortin butyl, a synthetic glucocorticoid * Forms Control Buffer in a printer * Fort Collins Brewery, an American brewery * Frozen carbonated beverage * Farsi Contemporary Bible ...
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Candidatus
In prokaryote nomenclature, ''Candidatus'' (Latin for candidate of Roman office) is used to name prokaryotic phyla that are well characterized but yet-uncultured. Contemporary sequencing approaches, such as 16S sequencing or metagenomics, provide much information about the analyzed organisms and thus allow to identify and characterize individual species. However, the majority of prokaryotic species remain uncultivable and hence inaccessible for further characterization in ''in vitro'' study. The recent discoveries of a multitude of candidate taxa has led to candidate phyla radiation expanding the tree of life through the new insights in bacterial diversity. Nomenclature History The initial International Code of Nomenclature of Prokaryotes as well as early revisions did not account for the possibility of identifying prokaryotes which were not yet cultivable. Therefore, the term ''Candidatus'' was proposed in the context of a conference of the International Committee on Systemati ...
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Bottlenose Dolphin
Bottlenose dolphins are aquatic mammals in the genus ''Tursiops.'' They are common, cosmopolitan members of the family Delphinidae, the family of oceanic dolphins. Molecular studies show the genus definitively contains two species: the common bottlenose dolphin (''Tursiops truncatus'') and the Indo-Pacific bottlenose dolphin (''Tursiops aduncus''). Others, like the Burrunan dolphin (''Tursiops (aduncus) australis''), may be alternately considered their own species or be subspecies of ''T. aduncus''. Bottlenose dolphins inhabit warm and temperate seas worldwide, being found everywhere except for the Arctic and Antarctic Circle regions. Their name derives from the Latin ''tursio'' (dolphin) and ''truncatus'' for their characteristic truncated teeth. Numerous investigations of bottlenose dolphin intelligence have been conducted, examining mimicry, use of artificial language, object categorization, and self-recognition. They can use tools (sponging; using marine sponges to forage ...
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Microbiological Culture
A microbiological culture, or microbial culture, is a method of multiplying microbial organisms by letting them reproduce in predetermined culture medium under controlled laboratory conditions. Microbial cultures are foundational and basic diagnostic methods used as a research tool in molecular biology. The term ''culture'' can also refer to the microorganisms being grown. Microbial cultures are used to determine the type of organism, its abundance in the sample being tested, or both. It is one of the primary diagnostic methods of microbiology and used as a tool to determine the cause of infectious disease by letting the agent multiply in a predetermined medium. For example, a throat culture is taken by scraping the lining of tissue in the back of the throat and blotting the sample into a medium to be able to screen for harmful microorganisms, such as ''Streptococcus pyogenes'', the causative agent of strep throat. Furthermore, the term culture is more generally used informally ...
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Metabolic Reconstruction Of A Member Of The Delphibacteria Phylum
Metabolism (, from el, μεταβολή ''metabolē'', "change") is the set of life-sustaining chemical reactions in organisms. The three main functions of metabolism are: the conversion of the energy in food to energy available to run cellular processes; the conversion of food to building blocks for proteins, lipids, nucleic acids, and some carbohydrates; and the elimination of metabolic wastes. These enzyme-catalyzed reactions allow organisms to grow and reproduce, maintain their structures, and respond to their environments. The word metabolism can also refer to the sum of all chemical reactions that occur in living organisms, including digestion and the transportation of substances into and between different cells, in which case the above described set of reactions within the cells is called intermediary (or intermediate) metabolism. Metabolic reactions may be categorized as ''catabolic'' – the ''breaking down'' of compounds (for example, of glucose to pyruvate by cel ...
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United States Navy Marine Mammal Program
The U.S. Navy Marine Mammal Program (NMMP) is a program administered by the U.S. Navy which studies the military use of marine mammals - principally bottlenose dolphins and California sea lions - and trains animals to perform tasks such as ship and harbor protection, mine detection and clearance, and equipment recovery. The program is based in San Diego, California, where animals are housed and trained on an ongoing basis. NMMP animal teams have been deployed for use in combat zones, such as during the Vietnam War and the Iraq War. The program has been dogged by controversy over the treatment of the animals and speculation as to the nature of its mission and training. This has been due at least in part to the secrecy of the program, which was de-classified in the early 1990s. Since the program's inception, there have been ongoing animal welfare concerns, with many opposing the use of marine mammals in military applications, even in essentially non-combatant roles such as mine dete ...
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16S Ribosomal RNA
16 S ribosomal RNA (or 16 S rRNA) is the RNA component of the 30S subunit of a prokaryotic ribosome (SSU rRNA). It binds to the Shine-Dalgarno sequence and provides most of the SSU structure. The genes coding for it are referred to as 16S rRNA gene and are used in reconstructing phylogenies, due to the slow rates of evolution of this region of the gene. Carl Woese and George E. Fox were two of the people who pioneered the use of 16S rRNA in phylogenetics in 1977. Multiple sequences of the 16S rRNA gene can exist within a single bacterium. Functions * Like the large (23S) ribosomal RNA, it has a structural role, acting as a scaffold defining the positions of the ribosomal proteins. * The 3-end contains the anti- Shine-Dalgarno sequence, which binds upstream to the AUG start codon on the mRNA. The 3-end of 16S RNA binds to the proteins S1 and S21 which are known to be involved in initiation of protein synthesis * Interacts with 23S, aiding in the binding of the two ribosomal s ...
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Heterotroph
A heterotroph (; ) is an organism that cannot produce its own food, instead taking nutrition from other sources of organic carbon, mainly plant or animal matter. In the food chain, heterotrophs are primary, secondary and tertiary consumers, but not producers. Living organisms that are heterotrophic include all animals and fungi, some bacteria and protists, and many parasitic plants. The term heterotroph arose in microbiology in 1946 as part of a classification of microorganisms based on their type of nutrition. The term is now used in many fields, such as ecology in describing the food chain. Heterotrophs may be subdivided according to their energy source. If the heterotroph uses chemical energy, it is a chemoheterotroph (e.g., humans and mushrooms). If it uses light for energy, then it is a photoheterotroph (e.g., green non-sulfur bacteria). Heterotrophs represent one of the two mechanisms of nutrition (trophic levels), the other being autotrophs (''auto'' = self, ''troph'' = ...
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Oceanic Dolphin
Oceanic dolphins or Delphinidae are a widely distributed family of dolphins that live in the sea. Close to forty extant species are recognised. They include several big species whose common names contain "whale" rather than "dolphin", such as the Globicephalinae (round-headed whales including the orca and pilot whale). Delphinidae is a family within the superfamily Delphinoidea, which also includes the porpoises (Phocoenidae) and the Monodontidae (beluga whale and narwhal). River dolphins are relatives of the Delphinoidea. Oceanic dolphins range in size from the and Maui's dolphin to the and orca, the largest known dolphin. Several species exhibit sexual dimorphism; the males are larger than females. They have streamlined bodies and two limbs that are modified into flippers. Though not quite as flexible as seals, some dolphins can travel at speeds 29 km/h (18 mph) for short distances. Most delphinids primarily eat fish, along with a smaller number of squid and small ...
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Bottom Water
Bottom water is the lowermost water mass in a water body, by its bottom, with distinct characteristics, in terms of physics, chemistry, and ecology. Oceanography Bottom water consists of cold, dense water near the ocean floor. This water is characterized by low salinity and nutrient content. Generally, low salinity from seasonal ice melt and freshwater river output characterizes bottom water produced in the Antarctic. However, during colder months, the formation of sea ice is a crucial process that raises the salinity of bottom water through brine rejection. As saltwater freezes, salt is expelled from the ice into the surrounding water. The oxygen content in bottom water is high due to ocean circulation. In the Antarctic, salty and cold surface water sinks to lower depths due to its high density. As the surface water sinks, it carries oxygen from the surface with it and will spend an enormous amount of time circulating across the seafloor of ocean basins. Oxygen-rich water moving th ...
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