Complex System Biology
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Complex System Biology
Complex systems biology (CSB) is a branch or subfield of mathematical and theoretical biology invented by Robert Rosen concerned with complexity of both structure and function in biological organisms, as well as the emergence and evolution of organisms and species, with emphasis being placed on the interconnectivity of, and within, biological network inference, and on modelling the fundamental relations inherent to life. According to Baianu ''et al''. CSB is a field that has only a partial overlap with the more conventional concepts of complex systems theory and systems biology, because CSB is concerned with philosophy and human consciousness. Moreover, mathematics can model a wide range of complex systems, but this is claimed not to be relevant. Complexity of organisms and biosphere There is no satisfying definition of complexity in biology.Bonner, J. T. 1988. The Evolution of Complexity by Means of Natural Selection. Princeton: Princeton University Press. According to Ros ...
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Mathematical And Theoretical Biology
Mathematical and theoretical biology, or biomathematics, is a branch of biology which employs theoretical analysis, mathematical models and abstractions of the living organisms to investigate the principles that govern the structure, development and behavior of the systems, as opposed to experimental biology which deals with the conduction of experiments to prove and validate the scientific theories. The field is sometimes called mathematical biology or biomathematics to stress the mathematical side, or theoretical biology to stress the biological side. Theoretical biology focuses more on the development of theoretical principles for biology while mathematical biology focuses on the use of mathematical tools to study biological systems, even though the two terms are sometimes interchanged. Mathematical biology aims at the mathematical representation and modeling of biological processes, using techniques and tools of applied mathematics. It can be useful in both theoretical and prac ...
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Consciousness
Consciousness, at its simplest, is sentience and awareness of internal and external existence. However, the lack of definitions has led to millennia of analyses, explanations and debates by philosophers, theologians, linguisticians, and scientists. Opinions differ about what exactly needs to be studied or even considered consciousness. In some explanations, it is synonymous with the mind, and at other times, an aspect of mind. In the past, it was one's "inner life", the world of introspection, of private thought, imagination and volition. Today, it often includes any kind of cognition, experience, feeling or perception. It may be awareness, awareness of awareness, or self-awareness either continuously changing or not. The disparate range of research, notions and speculations raises a curiosity about whether the right questions are being asked. Examples of the range of descriptions, definitions or explanations are: simple wakefulness, one's sense of selfhood or sou ...
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John E
John is a common English name and surname: * John (given name) * John (surname) John may also refer to: New Testament Works * Gospel of John, a title often shortened to John * First Epistle of John, often shortened to 1 John * Second Epistle of John, often shortened to 2 John * Third Epistle of John, often shortened to 3 John People * John the Baptist (died c. AD 30), regarded as a prophet and the forerunner of Jesus Christ * John the Apostle (lived c. AD 30), one of the twelve apostles of Jesus * John the Evangelist, assigned author of the Fourth Gospel, once identified with the Apostle * John of Patmos, also known as John the Divine or John the Revelator, the author of the Book of Revelation, once identified with the Apostle * John the Presbyter, a figure either identified with or distinguished from the Apostle, the Evangelist and John of Patmos Other people with the given name Religious figures * John, father of Andrew the Apostle and Saint Peter * Pope J ...
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Automata
An automaton (; plural: automata or automatons) is a relatively self-operating machine, or control mechanism designed to automatically follow a sequence of operations, or respond to predetermined instructions.Automaton – Definition and More from the Free Merriam-Webster Dictionary http://www.merriam-webster.com/dictionary/automaton Some automata, such as bellstrikers in mechanical clocks, are designed to give the illusion to the casual observer that they are operating under their own power. Since long ago, the term is commonly associated with automated puppets that resemble moving humans or animals, built to impress and/or to entertain people. Animatronics are a modern type of automata with electronics, often used for the portrayal of characters in films and in theme park attractions. Etymology The word "automaton" is the latinization of the Ancient Greek , , (neuter) "acting of one's own will". This word was first used by Homer to describe an automatic door opening, or au ...
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Autopoiesis
The term autopoiesis () refers to a system capable of producing and maintaining itself by creating its own parts. The term was introduced in the 1972 publication '' Autopoiesis and Cognition: The Realization of the Living'' by Chilean biologists Humberto Maturana and Francisco Varela to define the self-maintaining chemistry of living cells. Since then the concept has been also applied to the fields of cognition, systems theory, architecture and sociology. Overview In their 1972 book ''Autopoiesis and Cognition'', Chilean biologists Maturana and Varela described how they invented the word autopoiesis. They explained that, They described the "space defined by an autopoietic system" as "self-contained", a space that "cannot be described by using dimensions that define another space. When we refer to our interactions with a concrete autopoietic system, however, we project this system on the space of our manipulations and make a description of this projection." Meaning Autop ...
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Cliff Joslyn
Cliff Joslyn (born 1963) is an American mathematician, cognitive scientist, and cybernetician. He is currently the Chief Knowledge Scientist and Team Lead for Mathematics of Data Science at the Pacific Northwest National Laboratory in Seattle, Washington, USA, and Visiting Professor oSystems Scienceat Binghamton University (SUNY). Biography Cliff Joslyn studied at Oberlin College and received a BA in Cognitive Science and Mathematics, with High Honors in Cybernetics, in 1985. In 1987 he continued at the State University of New York at Binghamtonm studying under George Klir. In 1989 he received an MS, and in 1994 received a PhD, both in Systems Science, including the thesis "Possibilistic Processes for Complex Systems Modeling". From 1994 to 1996 he was an NRC Research Associate at NASA Goddard Space Flight Center. From 1996 to 2007 he was team leader at Los Alamos National Laboratory, where he led the Knowledge and Information Systems Science research team in the Modeling, A ...
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Valentin Turchin
Valentin Fyodorovich Turchin (russian: Валенти́н Фёдорович Турчи́н, 14 February 1931 in Podolsk – 7 April 2010 in Oakland, New Jersey) was a Soviet and American physicist, cybernetician, and computer scientist. He developed the Refal programming language, the theory of metasystem transitions and the notion of supercompilation. He was as a pioneer in artificial intelligence and a proponent of the global brain hypothesis. Biography Turchin was born in 1931 in Podolsk, Soviet Union. In 1952, he graduated from Moscow University in Theoretical Physics, and got his Ph.D. in 1957. After working on neutron and solid-state physics at the Institute for Physics of Energy in Obninsk, in 1964 he accepted a position at the Keldysh Institute of Applied Mathematics in Moscow. There he worked in statistical regularization methods and authored REFAL, one of the first AI languages and the AI language of choice in the Soviet Union. In the 1960s, Turchin became politic ...
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Meta-system
Meta-systems have several definitions. In general, they link the concepts "system" and "meta-". A "meta-system" is about other systems, such as describing, generalizing, modelling, or analyzing the other system(s). According to Valentin Turchin, Turchin and Cliff Joslyn, Joslyn (1997), this "natural" systemic definition is not sufficient for their Theory of Meta-system Transition, it also is not equivalent to the definition of ''system of systems'' in Autopoiesis, Autopoietic Systems Theory. In economics In economics, meta-systems are like what Georges Bataille, Bataille calls general economies as opposed to the restricted economies of systems. In mathematics, biology and psychology In mathematics, biology and psychology, many variables have occurred within structures and systems that determined the results, discoveries, Rate (mathematics), rates and Value (mathematics), value(s) of set (mathematics), sets, systems, and developments within systems, structures, systems within stru ...
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Species
In biology, a species is the basic unit of classification and a taxonomic rank of an organism, as well as a unit of biodiversity. A species is often defined as the largest group of organisms in which any two individuals of the appropriate sexes or mating types can produce fertile offspring, typically by sexual reproduction. Other ways of defining species include their karyotype, DNA sequence, morphology, behaviour or ecological niche. In addition, paleontologists use the concept of the chronospecies since fossil reproduction cannot be examined. The most recent rigorous estimate for the total number of species of eukaryotes is between 8 and 8.7 million. However, only about 14% of these had been described by 2011. All species (except viruses) are given a two-part name, a "binomial". The first part of a binomial is the genus to which the species belongs. The second part is called the specific name or the specific epithet (in botanical nomenclature, also sometimes i ...
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Genus
Genus ( plural genera ) is a taxonomic rank used in the biological classification of extant taxon, living and fossil organisms as well as Virus classification#ICTV classification, viruses. In the hierarchy of biological classification, genus comes above species and below family (taxonomy), family. In binomial nomenclature, the genus name forms the first part of the binomial species name for each species within the genus. :E.g. ''Panthera leo'' (lion) and ''Panthera onca'' (jaguar) are two species within the genus ''Panthera''. ''Panthera'' is a genus within the family Felidae. The composition of a genus is determined by taxonomy (biology), taxonomists. The standards for genus classification are not strictly codified, so different authorities often produce different classifications for genera. There are some general practices used, however, including the idea that a newly defined genus should fulfill these three criteria to be descriptively useful: # monophyly – all descendants ...
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Family (biology)
Family ( la, familia, plural ') is one of the eight major hierarchical taxonomic ranks in Linnaean taxonomy. It is classified between order and genus. A family may be divided into subfamilies, which are intermediate ranks between the ranks of family and genus. The official family names are Latin in origin; however, popular names are often used: for example, walnut trees and hickory trees belong to the family Juglandaceae, but that family is commonly referred to as the "walnut family". What belongs to a family—or if a described family should be recognized at all—are proposed and determined by practicing taxonomists. There are no hard rules for describing or recognizing a family, but in plants, they can be characterized on the basis of both vegetative and reproductive features of plant species. Taxonomists often take different positions about descriptions, and there may be no broad consensus across the scientific community for some time. The publishing of new data and opini ...
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Order (biology)
Order ( la, wikt:ordo#Latin, ordo) is one of the eight major hierarchical taxonomic ranks in Linnaean taxonomy. It is classified between Family_(biology), family and Class_(biology), class. In biological classification, the order is a taxonomic rank used in the classification of organisms and recognized by the nomenclature codes. An immediately higher rank, superorder, is sometimes added directly above order, with suborder directly beneath order. An order can also be defined as a group of related families. What does and does not belong to each order is determined by a taxonomist, as is whether a particular order should be recognized at all. Often there is no exact agreement, with different taxonomists each taking a different position. There are no hard rules that a taxonomist needs to follow in describing or recognizing an order. Some taxa are accepted almost universally, while others are recognized only rarely. The name of an order is usually written with a capital letter. Fo ...
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