Psychrophiles
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Psychrophiles
Psychrophiles or cryophiles (adj. ''psychrophilic'' or ''cryophilic'') are extremophilic organisms that are capable of growth and reproduction in low temperatures, ranging from to . They are found in places that are permanently cold, such as the polar regions and the deep sea. They can be contrasted with thermophiles, which are organisms that thrive at unusually high temperatures, and mesophiles at intermediate temperatures. Psychrophile is Greek for 'cold-loving', . Many such organisms are bacteria or archaea, but some eukaryotes such as lichens, snow algae, phytoplankton, fungi, and wingless midges, are also classified as psychrophiles. Biology Habitat The cold environments that psychrophiles inhabit are ubiquitous on Earth, as a large fraction of the planetary surface experiences temperatures lower than 10 °C. They are present in permafrost, polar ice, glaciers, snowfields and deep ocean waters. These organisms can also be found in pockets of sea ice with high sal ...
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Pseudomonas
''Pseudomonas'' is a genus of Gram-negative bacteria belonging to the family Pseudomonadaceae in the class Gammaproteobacteria. The 348 members of the genus demonstrate a great deal of metabolic diversity and consequently are able to colonize a wide range of niches and hosts. Their ease of culture ''in vitro'' and availability of an increasing number of ''Pseudomonas'' strain genome sequences has made the genus an excellent focus for scientific research; the best studied species include '' P. aeruginosa'' in its role as an opportunistic human pathogen, the plant pathogen '' P. syringae'', the soil bacterium '' P. putida'', and the plant growth-promoting '' P. fluorescens, P. lini, P. migulae'', and '' P. graminis''. Because of their widespread occurrence in water and plant seeds such as dicots, the pseudomonads were observed early in the history of microbiology. The generic name ''Pseudomonas'' created for these organisms was defined in rather vague terms by Walter Migula i ...
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Halomonas
''Halomonas'' is a genus of halophilic (salt-tolerating) bacteria. It grows over the range of 5 to 25% NaCl. The type species of this genus is '' Halomonas elongata''. Description Members of ''Halomonas'' are Gram-negative, rod-shaped bacteria, generally 0.6-0.8 μm by 1.6-1.9 μm. They move by using flagella. They grow in the presence of oxygen, although some have been reported to be able to grow without oxygen. When grown on an agar plate, they form white/yellow colonies that turn light brown over time. Ecology ''Halomonas'' species have been found in a broad variety of saline environments, including estuaries, the ocean, and saline lakes. Species Many species of ''Halomonas'' have been described: '' H. alimentaria'' '' H. alkaliantarctica'' '' H. alkaliphila'' '' H. almeriensis'' '' H. andesensis'' '' H. anticariensis'' '' H. aquamarina'' '' H. arcis'' '' H. axialensis'' '' H. beimenensis'' '' H. boliviensis'' '' H. campaniensis'' '' H. campisalis'' '' H. caseinilytica'' ' ...
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Psychrobacter
''Psychrobacter'' is a genus of Gram-negative, osmotolerant, oxidase-positive, psychrophilic or psychrotolerant, aerobic bacteria which belong to the family Moraxellaceae and the class Gammaproteobacteria. The shape is typically cocci or coccobacilli. Some of those bacteria were isolated from humans and can cause humans infections such as endocarditis and peritonitis. This genus of bacteria is able to grow at temperatures between −10 and 42 °C. Rudi Rossau found through DNA-rRNA hybridization analysis that ''Psychrobacter'' belongs to the Moraxellaceae. The first species ('' Psychrobacter immobilis'') was described by Juni and Heym. ''Psychrobacter'' occur in wide range of moist, cold saline habitats, but they also occur in warm and slightly saline habitats. Hypoacylated lipopolysaccharide (LPS) isolated from '' Psychrobacter cryohalolentis'' and '' Psychrobacter arcticus'' induces moderate TLR4-mediated inflammatory response in macrophages Macrophages (; ...
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Arthrobacter
''Arthrobacter'' (from the Greek, "jointed small stick”) is a genus of bacterium, bacteria that is commonly found in soil. All species in this genus are Gram-positive obligate aerobes that are bacterial shape, rods during exponential growth and bacterial shape, cocci in their Stationary phase (biology), stationary phase. ''Arthrobacter'' have a distinctive method of cell division called "snapping division" or reversion (microbiology), reversion in which the outer bacterial cell wall ruptures at a joint. Description ''Arthrobacter'' can be grown on mineral salts pyridone broth, where colonies have a greenish metallic center on incubated at . Under the microscope, ''Arthrobacter'' appear as rods when rapidly dividing, and cocci when in stationary phase. Dividing cells may also appear as chevrons ("V" shapes). Other notable characteristics are that it can use pyridone as its sole carbon source, and that its cocci are resistant to desiccation and starvation. Use in industry ''Arth ...
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Mesophile
A mesophile is an organism that grows best in moderate temperature, neither too hot nor too cold, with an optimum growth range from . The optimum growth temperature for these organisms is 37 °C (about 99 °F). The term is mainly applied to microorganisms. Organisms that prefer extreme environments are known as extremophiles. Mesophiles have diverse classifications, belonging to two domains: Bacteria, Archaea, and to kingdom Fungi of domain Eucarya. Mesophiles belonging to the domain Bacteria can either be gram-positive or gram-negative. Oxygen requirements for mesophiles can be aerobic or anaerobic. There are three basic shapes of mesophiles: coccus, bacillus, and spiral. Habitat The habitats of mesophiles can include cheese and yogurt. They are often included during fermentation of beer and wine making. Since normal human body temperature is 37 °C, the majority of human pathogens are mesophiles, as are most of the organisms comprising the human microbiome. ...
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Permafrost
Permafrost () is soil or underwater sediment which continuously remains below for two years or more; the oldest permafrost has been continuously frozen for around 700,000 years. Whilst the shallowest permafrost has a vertical extent of below a meter (3 ft), the deepest is greater than . Similarly, the area of individual permafrost zones may be limited to narrow mountain summits or extend across vast Arctic regions. The ground beneath glaciers and ice sheets is not usually defined as permafrost, so on land, permafrost is generally located beneath a so-called active layer of soil which freezes and thaws depending on the season. Around 15% of the Northern Hemisphere or 11% of the global surface is underlain by permafrost, covering a total area of around . This includes large areas of Alaska, Canada, Greenland, and Siberia. It is also located in high mountain regions, with the Tibetan Plateau being a prominent example. Only a minority of permafrost exists in the Southern Hemi ...
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Viable But Nonculturable
Viable but nonculturable (VBNC) bacteria refers as to bacteria that are in a state of very low metabolic activity and do not divide, but are alive and have the ability to become culturable once resuscitated. Bacteria in a VBNC state cannot grow on standard growth media, though flow cytometry can measure the viability of the bacteria. Bacteria can enter the VBNC state as a response to stress, due to adverse nutrient, temperature, osmotic, oxygen, and light conditions. The cells that are in the VBNC state are morphologically smaller, and demonstrate reduced nutrient transport, rate of respiration, and synthesis of macromolecules. Sometimes, VBNC bacteria can remain in that state for over a year. It has been shown that numerous pathogens and non-pathogens can enter the VBNC state, which therefore has significant implications in pathogenesis, bioremediation, and other branches of microbiology. The existence of the VBNC state is controversial. The validity and interpretation of the ...
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Antifreeze Proteins
Antifreeze proteins (AFPs) or ice structuring proteins refer to a class of polypeptides produced by certain animals, plants, fungi and bacteria that permit their survival in temperatures below the freezing point of water. AFPs bind to small ice crystals to inhibit the growth and recrystallization of ice that would otherwise be fatal. There is also increasing evidence that AFPs interact with mammalian cell membranes to protect them from cold damage. This work suggests the involvement of AFPs in cold acclimatization. Non-colligative properties Unlike the widely used automotive antifreeze, ethylene glycol, AFPs do not lower freezing point in proportion to concentration. Rather, they work in a non colligative manner. This phenomenon allows them to act as an antifreeze at concentrations 1/300th to 1/500th of those of other dissolved solutes. Their low concentration minimizes their effect on osmotic pressure. The unusual properties of AFPs are attributed to their selective affini ...
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Carotenoid
Carotenoids () are yellow, orange, and red organic pigments that are produced by plants and algae, as well as several bacteria, archaea, and fungi. Carotenoids give the characteristic color to pumpkins, carrots, parsnips, corn, tomatoes, canaries, flamingos, salmon, lobster, shrimp, and daffodils. Over 1,100 identified carotenoids can be further categorized into two classes xanthophylls (which contain oxygen) and carotenes (which are purely hydrocarbons and contain no oxygen). All are derivatives of tetraterpenes, meaning that they are produced from 8 isoprene units and contain 40 carbon atoms. In general, carotenoids absorb wavelengths ranging from 400 to 550 nanometers (violet to green light). This causes the compounds to be deeply colored yellow, orange, or red. Carotenoids are the dominant pigment in autumn leaf coloration of about 15-30% of tree species, but many plant colors, especially reds and purples, are due to polyphenols. Carotenoids serve two key roles in p ...
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Unsaturated Fatty Acids
In chemistry, in particular in biochemistry, a fatty acid is a carboxylic acid with an aliphatic chain, which is either saturated or unsaturated. Most naturally occurring fatty acids have an unbranched chain of an even number of carbon atoms, from 4 to 28. Fatty acids are a major component of the lipids (up to 70% by weight) in some species such as microalgae but in some other organisms are not found in their standalone form, but instead exist as three main classes of esters: triglycerides, phospholipids, and cholesteryl esters. In any of these forms, fatty acids are both important dietary sources of fuel for animals and important structural components for cells. History The concept of fatty acid (''acide gras'') was introduced in 1813 by Michel Eugène Chevreul, though he initially used some variant terms: ''graisse acide'' and ''acide huileux'' ("acid fat" and "oily acid"). Types of fatty acids Fatty acids are classified in many ways: by length, by saturation vs unsaturat ...
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Vitrification
Vitrification (, via French ') is the full or partial transformation of a substance into a glass, that is to say, a non- crystalline or amorphous solid. Glasses differ from liquids structurally and glasses possess a higher degree of connectivity with the same Hausdorff dimensionality of bonds as crystals: dimH = 3. In the production of ceramics, vitrification is responsible for their impermeability to water. Vitrification is usually achieved by heating materials until they liquify, then cooling the liquid, often rapidly, so that it passes through the glass transition to form a glassy solid. Certain chemical reactions also result in glasses. In terms of chemistry, vitrification is characteristic for amorphous materials or disordered systems and occurs when bonding between elementary particles (atoms, molecules, forming blocks) becomes higher than a certain threshold value. Thermal fluctuations break the bonds; therefore, the lower the temperature, the higher the ...
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Desiccation
Desiccation is the state of extreme dryness, or the process of extreme drying. A desiccant is a hygroscopic (attracts and holds water) substance that induces or sustains such a state in its local vicinity in a moderately sealed container. The word desiccation comes . Industry Desiccation is widely employed in the oil and gas industry. These materials are obtained in a hydrated state, but the water content leads to corrosion or is incompatible with downstream processing. Removal of water is achieved by cryogenics, cryogenic condensation, absorption into glycols, and absorption onto desiccants such as silica gel. Laboratory A desiccator is a heavy glass or plastic container, now somewhat antiquated, used in practical chemistry for drying or keeping small amounts of materials very dry. The material is placed on a shelf, and a drying agent or ''desiccant'', such as dry silica gel or anhydrous sodium hydroxide, is placed below the shelf. Often some sort of humidity indicator is ...
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