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BioLinux
BioLinux is a term used in a variety of projects involved in making access to bioinformatics software on a Linux platform easier using one or more of the following methods: * Provision of complete systems * Provision of bioinformatics software repositories * Addition of bioinformatics packages to standard distributions * Live DVD/ CDs with bioinformatics software added * Community building and support systems There are now various projects with similar aims, on both Linux systems and other Unices, and a selection of these are given below. There is also an overview in the Canadian Bioinformatics Helpdesk Newsletter that details some of the Linux-based projects. Package repositories Apple/Mac Many Linux packages are compatible with Mac OS X and there are several projects which attempt to make it easy to install selected Linux packages (including bioinformatics software) on a computer running Mac OS X. (source?) BioArchLinux [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
BioSLAX
BioSLAX is a Live CD/Live DVD/Live USB comprising a suite of more than 300 bioinformatics tools and application suites. It has been released by the Bioinformatics Resource Unit of the Life Sciences Institute (LSI), National University of Singapore (NUS) and is bootable from any PC that allows a CD/DVD or USB boot option and runs the compressed Slackware flavour of the Linux Operating System (OS), also known as Slax. Slax was created by Tomáš Matějíček in the Czech Republic using the Linux Live Scripts which he also developed. The BioSLAX derivative was created by Mark De Silva, Lim Kuan Siong and Tan Tin Wee. BioSLAX was first released to the NUS Life Science Curriculum in April 2006. History In January 2003, APBioNet received a research grant from the Pan Asia Networking (PAN) Programme of IDRC (Canada) to build an APBioBox of commonly used bioinformatics applications and packages with grid-computing software as part of its effort to build an APBioGrid. The platform chosen ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
List Of Biomedical Cybernetics Software
The following is a list of software packages and applications for biocybernetics research. Data formats and specifications * Systems Biology Markup Language (SBML) * Biological Pathway Exchange (BioPAX) * CellML * Minimum Information About a Simulation Experiment (MIASE) * Minimum information required in the annotation of models (MIRIAM) * Systems Biology Ontology (SBO) * Systems Biology Graphical Notation (SBGN) Libraries for software development * CyberUnits, a class library for computer simulations in life sciences Software products * SimThyr – Simulation system for thyroid homeostasis See also * List of sequence alignment software * List of open-source healthcare software * List of open-source bioinformatics software * List of proprietary bioinformatics software * List of freeware health software * List of molecular graphics systems * List of systems biology modeling software * Comparison of software for molecular mechanics modeling * BioLinux Other collectio ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Gentoo Linux
Gentoo Linux (pronounced ) is a Linux distribution built using the Portage package management system. Unlike a binary software distribution, the source code is compiled locally according to the user's preferences and is often optimized for the specific type of computer. Precompiled binaries are available for some larger packages or those with no available source code. Gentoo Linux was named after the gentoo penguin, the fastest swimming species of penguin. The name was chosen to reflect the potential speed improvements of machine-specific optimization, which is a major feature of Gentoo. Gentoo package management is designed to be modular, portable, easy to maintain, and flexible. Gentoo describes itself as a meta-distribution because of its adaptability, in that the majority of users have configurations and sets of installed programs which are unique to the system and the applications they use. History Gentoo Linux was initially created by Daniel Robbins as the ''Enoch ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
List Of Open-source Bioinformatics Software
This is a list of computer software which is made for bioinformatics and released under open-source software licenses with articles in Wikipedia. See also * List of sequence alignment software * List of open-source healthcare software * List of biomedical cybernetics software * List of freeware health software * List of genetic engineering software * List of molecular graphics systems * List of systems biology modelling software * Comparison of software for molecular mechanics modeling * List of proprietary bioinformatics software References External links Free Biology Software– Free Software Directory – Free Software Foundation {{DEFAULTSORT:Open source bioinformatics software Lists of bioinformatics software * Bioinformatics Open Open or OPEN may refer to: Music * Open (band), Australian pop/rock band * The Open (band), English indie rock band * ''Open'' (Blues Image album), 1969 * ''Open'' (Gotthard album), 1999 * ''Open'' (Cowboy Junkies album ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Ubuntu Linux
Ubuntu ( ) is a Linux distribution based on Debian and composed mostly of free and open-source software. Ubuntu is officially released in three editions: '' Desktop'', '' Server'', and ''Core'' for Internet of things devices and robots. All the editions can run on the computer alone, or in a virtual machine. Ubuntu is a popular operating system for cloud computing, with support for OpenStack. Ubuntu's default desktop changed back from the in-house Unity to GNOME after nearly 6.5 years in 2017 upon the release of version 17.10. Ubuntu is released every six months, with long-term support (LTS) releases every two years. , the most-recent release is 22.10 ("Kinetic Kudu"), and the current long-term support release is 22.04 ("Jammy Jellyfish"). Ubuntu is developed by British company Canonical, and a community of other developers, under a meritocratic governance model. Canonical provides security updates and support for each Ubuntu release, starting from the release date ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
SunOS
SunOS is a Unix-branded operating system developed by Sun Microsystems for their workstation and server computer systems. The ''SunOS'' name is usually only used to refer to versions 1.0 to 4.1.4, which were based on BSD, while versions 5.0 and later are based on UNIX System V Release 4, and are marketed under the brand name '' Solaris''. History SunOS 1 only supported the Sun-2 series systems, including Sun-1 systems upgraded with Sun-2 ( 68010) CPU boards. SunOS 2 supported Sun-2 and Sun-3 ( 68020) series systems. SunOS 4 supported Sun-2 (until release 4.0.3), Sun-3 (until 4.1.1), Sun386i (4.0, 4.0.1 and 4.0.2 only) and Sun-4 ( SPARC) architectures. Although SunOS 4 was intended to be the first release to fully support Sun's new SPARC processor, there was also a SunOS 3.2 release with preliminary support for Sun-4 systems. SunOS 4.1.2 introduced support for Sun's first sun4m-architecture multiprocessor machines (the SPARCserver 600MP seri ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
MacOS
macOS (; previously OS X and originally Mac OS X) is a Unix operating system developed and marketed by Apple Inc. since 2001. It is the primary operating system for Apple's Mac (computer), Mac computers. Within the market of desktop and laptop computers it is the Usage share of operating systems#Desktop and laptop computers, second most widely used desktop OS, after Microsoft Windows and ahead of ChromeOS. macOS succeeded the classic Mac OS, a Mac operating system with nine releases from 1984 to 1999. During this time, Apple cofounder Steve Jobs had left Apple and started another company, NeXT Computer, NeXT, developing the NeXTSTEP platform that would later be acquired by Apple to form the basis of macOS. The first desktop version, Mac OS X 10.0, was released in March 2001, with its first update, 10.1, arriving later that year. All releases from Mac OS X Leopard, Mac OS X 10.5 Leopard and after are UNIX 03 certified, with an exception for OS X Lion, OS X 10. ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
POSIX
The Portable Operating System Interface (POSIX) is a family of standards specified by the IEEE Computer Society for maintaining compatibility between operating systems. POSIX defines both the system- and user-level application programming interfaces (APIs), along with command line shells and utility interfaces, for software compatibility (portability) with variants of Unix and other operating systems. POSIX is also a trademark of the IEEE. POSIX is intended to be used by both application and system developers. Name Originally, the name "POSIX" referred to IEEE Std 1003.1-1988, released in 1988. The family of POSIX standards is formally designated as IEEE 1003 and the ISO/IEC standard number is ISO/ IEC 9945. The standards emerged from a project that began in 1984 building on work from related activity in the ''/usr/group'' association. Richard Stallman suggested the name ''POSIX'' (pronounced as ''pahz-icks,'' as in ''positive'', not as ''poh-six'') to the IEEE instead of f ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
NetBSD
NetBSD is a free and open-source Unix operating system based on the Berkeley Software Distribution (BSD). It was the first open-source BSD descendant officially released after 386BSD was forked. It continues to be actively developed and is available for many platforms, including servers, desktops, handheld devices, and embedded systems. The NetBSD project focuses on code clarity, careful design, and portability across many computer architectures. Its source code is publicly available and permissively licensed. History NetBSD was originally derived from the 4.3BSD-Reno release of the Berkeley Software Distribution from the Computer Systems Research Group of the University of California, Berkeley, via their Net/2 source code release and the 386BSD project. The NetBSD project began as a result of frustration within the 386BSD developer community with the pace and direction of the operating system's development. The four founders of the NetBSD project, Chris Demetriou, The ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
FreeBSD Ports
The FreeBSD Ports collection is a package management system for the FreeBSD operating system, providing an easy and consistent way of installing software packages. As of February 2020, there are over 38,487 ports available in the collection. It has also been adopted by NetBSD as the basis of its pkgsrc system. Installing from source The ports collection uses Makefiles arranged in a directory hierarchy so that software can be built, installed and uninstalled with the make command. When installing an application, very little (if any) user intervention is required after issuing a beginning command such as make install or make install clean in the ports directory of the desired application. In most cases the software is automatically downloaded from the Internet, patched and configured if necessary, then compiled, installed and registered in the package database. If the new port has needed dependencies on other applications or libraries, these are installed beforehand auto ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Pkgsrc
pkgsrc (''package source'') is a package management system for Unix-like operating systems. It was forked from the FreeBSD ports collection in 1997 as the primary package management system for NetBSD. Since then it has evolved independently; in 1999, support for Solaris was added, followed by support for other operating systems. pkgsrc currently contains over 22,000 packages and includes most popular open-source software. It is the native package manager on NetBSD, SmartOS and MINIX 3, and is portable across 23 different operating systems, including AIX, various BSD derivatives, HP-UX, IRIX, Linux, macOS, Solaris, and QNX. There are multiple ways to install programs using pkgsrc. The pkgsrc bootstrap contains a traditional ports collection that utilizes a series of makefiles to compile software from source. Another method is to install pre-built binary packages via the and tools. A high-level utility named also exists, and is designed to automate the installation, remo ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
ARM Architecture Family
ARM (stylised in lowercase as arm, formerly an acronym for Advanced RISC Machines and originally Acorn RISC Machine) is a family of reduced instruction set computer (RISC) instruction set architectures for computer processors, configured for various environments. Arm Ltd. develops the architectures and licenses them to other companies, who design their own products that implement one or more of those architectures, including system on a chip (SoC) and system on module (SOM) designs, that incorporate different components such as memory, interfaces, and radios. It also designs cores that implement these instruction set architectures and licenses these designs to many companies that incorporate those core designs into their own products. There have been several generations of the ARM design. The original ARM1 used a 32-bit internal structure but had a 26-bit address space that limited it to 64 MB of main memory. This limitation was removed in the ARMv3 series, which ha ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
